Wall clock time and date at job start Fri Apr 10 2020 14:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47708 * 2 1 4 4 O 1.42901 * 109.47161 * 119.99572 * 2 1 3 5 5 C 1.42900 * 114.00155 * 270.00192 * 4 2 1 6 6 C 1.52996 * 109.47319 * 179.97438 * 5 4 2 7 7 H 1.09000 * 110.27723 * 54.30070 * 6 5 4 8 8 C 1.54945 * 110.31147 * 176.39018 * 6 5 4 9 9 C 1.55417 * 100.89586 * 155.29018 * 8 6 5 10 10 C 1.54383 * 102.30567 * 325.99198 * 9 8 6 11 11 O 1.43236 * 107.59021 * 21.28645 * 10 9 8 12 12 C 1.50697 * 109.47608 * 239.99373 * 2 1 3 13 13 O 1.21283 * 120.00521 * 244.72998 * 12 2 1 14 14 N 1.34784 * 119.99774 * 65.00104 * 12 2 1 15 15 S 1.65594 * 120.00243 * 179.72904 * 14 12 2 16 16 O 1.42092 * 104.27761 * 181.07072 * 15 14 12 17 17 O 1.42109 * 104.27643 * 308.92904 * 15 14 12 18 18 C 1.81403 * 104.45166 * 64.99818 * 15 14 12 19 19 C 1.50695 * 109.47268 * 180.02562 * 18 15 14 20 20 H 1.08001 * 120.00312 * 0.02562 * 19 18 15 21 21 C 1.37881 * 119.99998 * 179.97438 * 19 18 15 22 22 N 1.31509 * 120.00060 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99972 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46673 * 60.00144 * 23 21 19 25 25 H 1.48493 * 109.47165 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47011 * 300.00458 * 23 21 19 27 27 H 1.09009 * 109.46776 * 60.00318 * 1 2 3 28 28 H 1.08997 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47307 * 300.00606 * 1 2 3 30 30 H 1.08995 * 109.46898 * 299.99833 * 5 4 2 31 31 H 1.09002 * 109.47176 * 59.99659 * 5 4 2 32 32 H 1.09008 * 111.12414 * 273.27849 * 8 6 5 33 33 H 1.08994 * 111.12540 * 37.44060 * 8 6 5 34 34 H 1.09000 * 110.88298 * 207.75407 * 9 8 6 35 35 H 1.09004 * 110.93290 * 84.24798 * 9 8 6 36 36 H 1.09005 * 109.83064 * 261.76828 * 10 9 8 37 37 H 1.09002 * 109.90547 * 140.84439 * 10 9 8 38 38 H 0.97005 * 119.99846 * 359.72750 * 14 12 2 39 39 H 1.09006 * 109.46794 * 300.00584 * 18 15 14 40 40 H 1.09001 * 109.46954 * 60.00159 * 18 15 14 41 41 H 0.96999 * 120.00542 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1831 2.2941 6 6 2.7078 -0.6405 3.4792 7 1 3.6004 -1.1987 3.1966 8 6 3.0110 0.2833 4.6857 9 6 2.8594 -0.7161 5.8663 10 6 1.7355 -1.6487 5.3657 11 8 1.6839 -1.5371 3.9387 12 6 2.0324 -0.7105 -1.2303 13 8 2.6573 -1.7442 -1.1211 14 7 1.7920 -0.1943 -2.4520 15 16 2.3499 -0.9715 -3.8037 16 8 1.9385 -0.1406 -4.8804 17 8 3.7274 -1.1953 -3.5358 18 6 1.4431 -2.5424 -3.8294 19 6 1.8697 -3.3491 -5.0285 20 1 2.6124 -2.9564 -5.7072 21 6 1.3126 -4.5892 -5.2588 22 7 0.4086 -5.0677 -4.4322 23 14 1.8410 -5.5889 -6.7457 24 1 3.2990 -5.8595 -6.6674 25 1 1.0988 -6.8749 -6.7667 26 1 1.5448 -4.8267 -7.9852 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 2.9319 0.9514 2.0450 31 1 1.2537 0.6548 2.5588 32 1 4.0251 0.6794 4.6321 33 1 2.2799 1.0885 4.7573 34 1 2.5574 -0.1987 6.7769 35 1 3.7828 -1.2727 6.0263 36 1 0.7818 -1.3421 5.7954 37 1 1.9543 -2.6784 5.6485 38 1 1.2922 0.6324 -2.5394 39 1 1.6600 -3.1020 -2.9194 40 1 0.3730 -2.3432 -3.8870 41 1 0.0164 -5.9399 -4.5944 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821582236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:21 Heat of formation + Delta-G solvation = -238.811955 kcal Electronic energy + Delta-G solvation = -25491.800843 eV Core-core repulsion = 21497.847170 eV Total energy + Delta-G solvation = -3993.953673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43544 -40.42601 -38.62901 -38.07593 -37.07596 -35.74596 -35.43371 -33.22993 -32.72525 -31.11994 -30.99607 -26.67923 -25.81741 -25.42113 -22.70448 -22.32757 -22.19183 -20.90084 -19.37283 -18.87726 -18.49380 -18.12249 -17.59650 -17.27442 -16.96206 -16.66649 -16.44155 -16.22285 -16.13089 -15.60149 -15.38183 -14.54968 -14.50865 -14.16609 -14.13973 -13.73698 -13.60959 -13.50548 -13.33884 -13.22240 -13.11523 -13.05965 -12.73582 -12.64668 -12.59536 -12.52560 -12.18476 -12.08464 -12.05669 -11.87439 -11.67265 -11.27079 -11.09204 -10.80157 -10.62492 -10.47027 -8.43510 -6.63487 -0.77401 1.01076 1.35889 1.41040 1.47727 1.49387 2.28147 2.46889 2.74872 2.88895 2.90349 3.14880 3.37636 3.56551 3.80588 3.90084 3.95161 3.98707 4.03192 4.16295 4.27480 4.39159 4.50211 4.60889 4.63469 4.70559 4.73762 4.79392 4.83072 4.90153 4.99248 5.01928 5.23013 5.25464 5.27124 5.63212 5.69212 6.04275 6.19165 6.45475 6.50996 7.08416 8.69405 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.002971 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.825632 B = 9423.074038 C =10227.735827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.077 3.923 3 H 0.142 0.858 4 O -0.389 6.389 5 C 0.054 3.946 6 C 0.070 3.930 7 H 0.058 0.942 8 C -0.137 4.137 9 C -0.150 4.150 10 C 0.036 3.964 11 O -0.406 6.406 12 C 0.525 3.475 13 O -0.522 6.522 14 N -1.036 6.036 15 S 2.602 3.398 16 O -0.973 6.973 17 O -0.986 6.986 18 C -0.423 4.423 19 C -0.569 4.569 20 H 0.070 0.930 21 C 0.023 3.977 22 N -0.909 5.909 23 Si 0.969 3.031 24 H -0.265 1.265 25 H -0.269 1.269 26 H -0.255 1.255 27 H 0.102 0.898 28 H 0.048 0.952 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.449 0.551 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.902 16.625 20.233 26.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 H 0.160 0.840 4 O -0.308 6.308 5 C -0.022 4.022 6 C 0.012 3.988 7 H 0.076 0.924 8 C -0.175 4.175 9 C -0.187 4.187 10 C -0.040 4.040 11 O -0.326 6.326 12 C 0.312 3.688 13 O -0.393 6.393 14 N -0.804 5.804 15 S 2.702 3.298 16 O -0.964 6.964 17 O -0.976 6.976 18 C -0.558 4.558 19 C -0.608 4.608 20 H 0.088 0.912 21 C -0.180 4.180 22 N -0.546 5.546 23 Si 0.790 3.210 24 H -0.190 1.190 25 H -0.193 1.193 26 H -0.179 1.179 27 H 0.120 0.880 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.289 0.711 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.009 15.813 19.707 25.267 hybrid contribution -0.395 -0.790 -0.359 0.953 sum -0.404 15.023 19.347 24.499 Atomic orbital electron populations 1.22324 0.90930 1.03716 1.05978 1.22168 0.96841 0.97181 0.82378 0.84048 1.88116 1.86859 1.35971 1.19819 1.23088 1.02125 0.92548 0.84405 1.23170 0.90549 0.90822 0.94226 0.92365 1.23259 1.04745 0.97952 0.91519 1.23143 0.98913 0.97036 0.99614 1.23347 1.00126 1.00164 0.80371 1.88522 1.55033 1.66908 1.22178 1.21424 0.77014 0.84665 0.85689 1.90919 1.37768 1.24198 1.86453 1.54890 1.66206 1.38319 1.20973 1.05370 0.75090 0.77066 0.72276 1.93503 1.83929 1.66758 1.52199 1.93489 1.33472 1.86757 1.83872 1.27671 1.09039 1.13820 1.05223 1.20711 1.26526 1.04549 1.09043 0.91222 1.25924 0.93963 0.98030 1.00095 1.70042 1.27166 1.19322 1.38026 0.85443 0.79099 0.77868 0.78570 1.18987 1.19331 1.17928 0.87977 0.93254 0.88063 0.89021 0.90190 0.87784 0.88335 0.87542 0.90271 0.90254 0.91917 0.71080 0.90899 0.89421 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.48 71.98 0.68 -2.40 16 2 C 0.08 1.76 3.13 29.85 0.09 1.86 16 3 H 0.14 1.80 7.79 -2.39 -0.02 1.78 16 4 O -0.39 -11.11 9.52 -127.40 -1.21 -12.32 16 5 C 0.05 0.98 5.45 71.98 0.39 1.38 16 6 C 0.07 1.39 3.72 31.26 0.12 1.50 16 7 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 8 C -0.14 -1.43 6.58 32.09 0.21 -1.22 16 9 C -0.15 -1.55 7.02 31.90 0.22 -1.33 16 10 C 0.04 0.60 7.80 72.45 0.56 1.16 16 11 O -0.41 -10.30 11.04 -148.29 -1.64 -11.94 16 12 C 0.53 17.99 6.92 87.65 0.61 18.60 16 13 O -0.52 -24.40 14.61 24.21 0.35 -24.05 16 14 N -1.04 -32.10 5.57 -173.52 -0.97 -33.07 16 15 S 2.60 114.34 5.03 -56.49 -0.28 114.06 16 16 O -0.97 -43.33 18.08 -127.65 -2.31 -45.63 16 17 O -0.99 -50.57 17.04 -120.72 -2.06 -52.63 16 18 C -0.42 -22.27 5.64 71.23 0.40 -21.87 16 19 C -0.57 -33.30 9.13 25.60 0.23 -33.07 16 20 H 0.07 3.94 7.71 -2.91 -0.02 3.91 16 21 C 0.02 1.34 5.46 84.66 0.46 1.80 16 22 N -0.91 -54.35 13.29 21.45 0.28 -54.06 16 23 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 27 H 0.10 1.25 7.92 -2.38 -0.02 1.23 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.10 1.26 7.87 -2.39 -0.02 1.24 16 30 H 0.09 1.12 8.08 -2.39 -0.02 1.10 16 31 H 0.08 1.09 7.87 -2.39 -0.02 1.07 16 32 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.10 0.71 8.06 -2.39 -0.02 0.69 16 34 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 1.08 8.14 -2.38 -0.02 1.07 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 38 H 0.45 8.69 8.56 -96.74 -0.83 7.86 16 39 H 0.07 4.18 7.19 -2.39 -0.02 4.16 16 40 H 0.09 4.43 8.14 -2.39 -0.02 4.41 16 41 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -89.10 359.85 -1.60 -90.70 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.21 Total: 16.36 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 3.99 Total: -33.58 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -0.68 Total: -87.13 kcal Atomic # 8 Polarization: -139.72 SS G_CDS: -6.86 Total: -146.58 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 114.34 SS G_CDS: -0.28 Total: 114.06 kcal Total: -89.10 -1.60 -90.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.117 kcal (2) G-P(sol) polarization free energy of solvation -89.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds