Wall clock time and date at job start Fri Apr 10 2020 14:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47382 * 2 1 4 4 C 1.34231 * 117.00262 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99845 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00154 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.46866 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46626 * 179.97438 * 7 6 4 9 9 S 1.81409 * 109.46821 * 179.97438 * 8 7 6 10 10 O 1.42097 * 110.54324 * 291.62961 * 9 8 7 11 11 O 1.42096 * 110.53825 * 68.38125 * 9 8 7 12 12 N 1.65601 * 104.44945 * 180.02562 * 9 8 7 13 13 C 1.47067 * 136.05596 * 269.63441 * 12 9 8 14 14 C 1.53757 * 87.88658 * 152.96361 * 13 12 9 15 15 O 1.42900 * 114.39274 * 272.67448 * 14 13 12 16 16 C 1.50698 * 114.26981 * 139.79244 * 14 13 12 17 17 H 1.07999 * 119.99971 * 266.47497 * 16 14 13 18 18 C 1.37872 * 120.00233 * 86.46956 * 16 14 13 19 19 N 1.31516 * 120.00234 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00089 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47333 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46847 * 120.00369 * 20 18 16 23 23 H 1.48506 * 109.47263 * 240.00124 * 20 18 16 24 24 C 1.47064 * 136.05868 * 90.00000 * 12 9 8 25 25 H 1.09002 * 109.46888 * 59.99374 * 1 2 3 26 26 H 1.08998 * 109.47657 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46827 * 300.00075 * 1 2 3 28 28 H 1.09003 * 109.46932 * 240.00410 * 2 1 3 29 29 H 1.09001 * 109.47487 * 120.00163 * 2 1 3 30 30 H 1.09000 * 109.47247 * 60.00272 * 6 4 3 31 31 H 1.09001 * 109.47358 * 299.99698 * 6 4 3 32 32 H 1.08993 * 109.46955 * 300.00219 * 7 6 4 33 33 H 1.09000 * 109.47050 * 60.00048 * 7 6 4 34 34 H 1.08993 * 109.47839 * 299.99931 * 8 7 6 35 35 H 1.09000 * 109.47160 * 60.00369 * 8 7 6 36 36 H 1.08998 * 113.46551 * 267.69165 * 13 12 9 37 37 H 1.08997 * 113.47084 * 38.13249 * 13 12 9 38 38 H 0.96706 * 113.99905 * 273.58345 * 15 14 13 39 39 H 0.96998 * 120.00612 * 180.02562 * 19 18 16 40 40 H 1.09002 * 113.46986 * 321.86912 * 24 12 9 41 41 H 1.09003 * 113.46672 * 92.24498 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 6 5.4488 2.8571 0.0010 8 6 6.0335 4.2710 0.0010 9 16 7.8451 4.1760 0.0017 10 8 8.3170 3.6602 1.2388 11 8 8.3177 3.6601 -1.2351 12 7 8.3418 5.7557 0.0023 13 6 8.6659 6.7643 -1.0178 14 6 8.2656 7.8425 0.0026 15 8 6.8743 8.1684 0.0016 16 6 9.1613 9.0544 0.0068 17 1 9.9950 9.1074 0.6912 18 6 8.9165 10.0955 -0.8633 19 7 7.9010 10.0313 -1.6966 20 14 10.0272 11.5974 -0.8586 21 1 11.0895 11.4244 0.1644 22 1 10.6506 11.7561 -2.1971 23 1 9.2246 12.8057 -0.5400 24 6 8.6590 6.7656 1.0232 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 3.5846 3.4692 0.8912 31 1 3.5853 3.4698 -0.8888 32 1 5.7847 2.3246 0.8907 33 1 5.7846 2.3254 -0.8892 34 1 5.6976 4.8032 -0.8888 35 1 5.6977 4.8031 0.8911 36 1 9.7228 6.7890 -1.2833 37 1 8.0127 6.7256 -1.8895 38 1 6.6298 8.8471 -0.6424 39 1 7.7290 10.7635 -2.3090 40 1 7.9998 6.7281 1.8905 41 1 9.7139 6.7900 1.2966 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440094724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:57 Heat of formation + Delta-G solvation = -179.890777 kcal Electronic energy + Delta-G solvation = -25118.226036 eV Core-core repulsion = 21126.827377 eV Total energy + Delta-G solvation = -3991.398659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.73392 -38.63355 -37.12765 -36.69027 -35.58112 -34.87933 -33.99682 -32.18167 -32.10998 -28.88568 -27.88159 -25.07928 -24.78966 -24.01531 -22.56075 -20.87241 -19.66440 -18.33657 -17.97479 -17.59259 -17.14068 -16.79678 -16.53893 -16.05794 -15.64359 -15.33283 -15.04856 -14.28459 -14.19982 -13.79606 -13.65884 -13.46617 -13.18272 -13.06147 -12.78544 -12.68447 -12.16818 -12.16149 -12.12323 -11.88020 -11.76884 -11.68150 -11.66882 -11.53805 -11.18856 -11.09297 -10.85468 -10.83640 -10.78690 -10.48788 -10.44822 -10.24751 -9.31372 -8.80364 -8.54260 -8.07426 -6.39599 -4.48488 0.57385 1.95624 2.36339 3.08875 3.14392 3.24075 3.28093 4.12950 4.19356 4.28825 4.37344 4.55198 4.59677 4.65714 4.66173 4.78244 4.85592 4.89726 5.10745 5.25055 5.35292 5.38972 5.43629 5.51599 5.59332 5.64630 5.88805 6.03997 6.13080 6.16443 6.30245 6.39850 6.65823 6.72214 7.02054 7.48627 7.49808 7.66461 7.84038 8.55113 9.22065 9.46164 10.67058 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.002628 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.874573 B =10650.500429 C =11440.563479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.461 3.539 5 O -0.507 6.507 6 C -0.105 4.105 7 C -0.101 4.101 8 C -0.631 4.631 9 S 2.636 3.364 10 O -0.965 6.965 11 O -0.962 6.962 12 N -1.043 6.043 13 C 0.106 3.894 14 C 0.237 3.763 15 O -0.575 6.575 16 C -0.531 4.531 17 H 0.073 0.927 18 C 0.070 3.930 19 N -0.900 5.900 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.135 3.865 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.394 0.606 39 H 0.273 0.727 40 H 0.063 0.937 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.066 -11.937 2.009 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.277 6.277 4 C 0.304 3.696 5 O -0.395 6.395 6 C -0.144 4.144 7 C -0.140 4.140 8 C -0.759 4.759 9 S 2.732 3.268 10 O -0.955 6.955 11 O -0.953 6.953 12 N -0.883 5.883 13 C -0.019 4.019 14 C 0.194 3.806 15 O -0.388 6.388 16 C -0.570 4.570 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.541 5.541 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.207 1.207 24 C 0.010 3.990 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.251 0.749 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.500 -13.613 2.325 17.971 hybrid contribution -0.120 1.337 -0.629 1.482 sum -11.619 -12.276 1.695 16.988 Atomic orbital electron populations 1.21812 0.92538 1.03006 1.03624 1.23046 0.95436 0.80191 1.02706 1.86514 1.24619 1.32490 1.84051 1.23851 0.80535 0.92979 0.72210 1.90691 1.60372 1.43281 1.45130 1.21387 0.95384 0.90784 1.06835 1.21130 0.94085 0.93722 1.05098 1.30709 1.28588 1.04120 1.12465 1.04001 0.77112 0.71865 0.73871 1.93545 1.78373 1.77875 1.45743 1.93553 1.78309 1.77736 1.45690 1.59702 1.80717 1.28054 1.19863 1.23663 1.00054 0.85313 0.92901 1.19794 0.81417 0.90029 0.89403 1.85968 1.24062 1.63698 1.65073 1.21551 1.13094 1.01810 1.20532 0.90893 1.25078 0.95352 0.98717 0.94023 1.69253 1.28998 1.33443 1.22391 0.86276 0.80344 0.81701 0.78150 1.19434 1.20728 1.20724 1.22800 0.99850 0.84331 0.91999 0.91404 0.90209 0.91407 0.91157 0.91162 0.86894 0.86876 0.89522 0.89514 0.84509 0.84551 0.90300 0.92049 0.74919 0.91698 0.91854 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.47 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.36 -3.70 10.22 -39.26 -0.40 -4.10 16 4 C 0.46 5.31 7.96 36.01 0.29 5.59 16 5 O -0.51 -7.29 15.73 -18.75 -0.29 -7.58 16 6 C -0.11 -1.02 5.81 -27.88 -0.16 -1.18 16 7 C -0.10 -1.22 4.51 -26.73 -0.12 -1.34 16 8 C -0.63 -8.20 6.18 37.16 0.23 -7.97 16 9 S 2.64 46.18 5.96 -107.50 -0.64 45.54 16 10 O -0.96 -18.99 18.07 -57.54 -1.04 -20.03 16 11 O -0.96 -19.38 18.07 -57.54 -1.04 -20.42 16 12 N -1.04 -20.30 4.10 -125.02 -0.51 -20.81 16 13 C 0.11 2.26 8.13 -8.37 -0.07 2.20 16 14 C 0.24 5.39 1.58 -91.13 -0.14 5.24 16 15 O -0.57 -13.44 13.55 -35.23 -0.48 -13.92 16 16 C -0.53 -12.90 8.70 -34.44 -0.30 -13.20 16 17 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 18 C 0.07 1.71 5.39 -17.82 -0.10 1.62 16 19 N -0.90 -22.20 11.01 55.43 0.61 -21.59 16 20 Si 0.91 19.14 29.54 -169.99 -5.02 14.11 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 24 C 0.14 2.71 8.10 -8.51 -0.07 2.64 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 30 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 33 H 0.09 1.07 8.10 -51.93 -0.42 0.64 16 34 H 0.14 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.14 1.60 8.14 -51.92 -0.42 1.17 16 36 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.39 9.55 6.32 45.56 0.29 9.84 16 39 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 LS Contribution 364.79 15.07 5.50 5.50 Total: -1.00 -31.15 364.79 -8.74 -39.89 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.59 Total: 9.58 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 0.17 Total: -6.16 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.10 Total: -42.41 kcal Atomic # 8 Polarization: -62.80 SS G_CDS: -3.25 Total: -66.06 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Atomic # 16 Polarization: 46.18 SS G_CDS: -0.64 Total: 45.54 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.15 -8.74 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440094724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.999 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds