Wall clock time and date at job start Fri Apr 10 2020 14:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47382 * 2 1 4 4 C 1.34231 * 117.00262 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99845 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00154 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.46866 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46626 * 179.97438 * 7 6 4 9 9 S 1.81409 * 109.46821 * 179.97438 * 8 7 6 10 10 O 1.42097 * 110.54324 * 291.62961 * 9 8 7 11 11 O 1.42096 * 110.53825 * 68.38125 * 9 8 7 12 12 N 1.65601 * 104.44945 * 180.02562 * 9 8 7 13 13 C 1.47067 * 136.05596 * 269.63441 * 12 9 8 14 14 C 1.53757 * 87.88658 * 152.96361 * 13 12 9 15 15 O 1.42900 * 114.39274 * 272.67448 * 14 13 12 16 16 C 1.50698 * 114.26981 * 139.79244 * 14 13 12 17 17 H 1.07999 * 119.99971 * 266.47497 * 16 14 13 18 18 C 1.37872 * 120.00233 * 86.46956 * 16 14 13 19 19 N 1.31516 * 120.00234 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00089 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47333 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46847 * 120.00369 * 20 18 16 23 23 H 1.48506 * 109.47263 * 240.00124 * 20 18 16 24 24 C 1.47064 * 136.05868 * 90.00000 * 12 9 8 25 25 H 1.09002 * 109.46888 * 59.99374 * 1 2 3 26 26 H 1.08998 * 109.47657 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46827 * 300.00075 * 1 2 3 28 28 H 1.09003 * 109.46932 * 240.00410 * 2 1 3 29 29 H 1.09001 * 109.47487 * 120.00163 * 2 1 3 30 30 H 1.09000 * 109.47247 * 60.00272 * 6 4 3 31 31 H 1.09001 * 109.47358 * 299.99698 * 6 4 3 32 32 H 1.08993 * 109.46955 * 300.00219 * 7 6 4 33 33 H 1.09000 * 109.47050 * 60.00048 * 7 6 4 34 34 H 1.08993 * 109.47839 * 299.99931 * 8 7 6 35 35 H 1.09000 * 109.47160 * 60.00369 * 8 7 6 36 36 H 1.08998 * 113.46551 * 267.69165 * 13 12 9 37 37 H 1.08997 * 113.47084 * 38.13249 * 13 12 9 38 38 H 0.96706 * 113.99905 * 273.58345 * 15 14 13 39 39 H 0.96998 * 120.00612 * 180.02562 * 19 18 16 40 40 H 1.09002 * 113.46986 * 321.86912 * 24 12 9 41 41 H 1.09003 * 113.46672 * 92.24498 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 6 5.4488 2.8571 0.0010 8 6 6.0335 4.2710 0.0010 9 16 7.8451 4.1760 0.0017 10 8 8.3170 3.6602 1.2388 11 8 8.3177 3.6601 -1.2351 12 7 8.3418 5.7557 0.0023 13 6 8.6659 6.7643 -1.0178 14 6 8.2656 7.8425 0.0026 15 8 6.8743 8.1684 0.0016 16 6 9.1613 9.0544 0.0068 17 1 9.9950 9.1074 0.6912 18 6 8.9165 10.0955 -0.8633 19 7 7.9010 10.0313 -1.6966 20 14 10.0272 11.5974 -0.8586 21 1 11.0895 11.4244 0.1644 22 1 10.6506 11.7561 -2.1971 23 1 9.2246 12.8057 -0.5400 24 6 8.6590 6.7656 1.0232 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 3.5846 3.4692 0.8912 31 1 3.5853 3.4698 -0.8888 32 1 5.7847 2.3246 0.8907 33 1 5.7846 2.3254 -0.8892 34 1 5.6976 4.8032 -0.8888 35 1 5.6977 4.8031 0.8911 36 1 9.7228 6.7890 -1.2833 37 1 8.0127 6.7256 -1.8895 38 1 6.6298 8.8471 -0.6424 39 1 7.7290 10.7635 -2.3090 40 1 7.9998 6.7281 1.8905 41 1 9.7139 6.7900 1.2966 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440094724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:55 Heat of formation + Delta-G solvation = -203.236838 kcal Electronic energy + Delta-G solvation = -25119.238397 eV Core-core repulsion = 21126.827377 eV Total energy + Delta-G solvation = -3992.411020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.59091 -40.29332 -38.18667 -37.96450 -37.07160 -35.87152 -35.73220 -34.01862 -32.69892 -29.84065 -29.54750 -26.71217 -26.49289 -24.81312 -23.36310 -21.74936 -21.29336 -19.81661 -19.33904 -18.82693 -18.24740 -17.96584 -17.73025 -17.36020 -16.95764 -16.78239 -16.19963 -15.96273 -15.41250 -15.04746 -14.92338 -14.65838 -14.49495 -14.12908 -13.82493 -13.51981 -13.50776 -13.37931 -13.27518 -13.25020 -13.17763 -13.07527 -12.88790 -12.78512 -12.51179 -12.47404 -12.19213 -12.08511 -12.05262 -11.88896 -11.55280 -11.53825 -11.04455 -10.59838 -10.20497 -9.74839 -8.21749 -6.36472 -0.79802 1.09759 1.47478 1.52504 1.56867 1.62340 1.69650 2.43921 2.84918 2.95953 3.07180 3.36214 3.67771 3.68210 3.77472 3.94331 3.98249 4.06419 4.19810 4.33176 4.34933 4.44848 4.48726 4.62610 4.71496 4.71924 4.82060 4.84361 4.91111 4.93934 5.00926 5.07680 5.13725 5.30236 5.42946 5.75626 5.88950 6.03941 6.64757 6.69773 7.36415 7.59326 8.83747 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.002628 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.874573 B =10650.500429 C =11440.563479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.544 6.544 6 C -0.101 4.101 7 C -0.109 4.109 8 C -0.598 4.598 9 S 2.632 3.368 10 O -0.991 6.991 11 O -0.995 6.995 12 N -1.045 6.045 13 C 0.107 3.893 14 C 0.221 3.779 15 O -0.576 6.576 16 C -0.550 4.550 17 H 0.071 0.929 18 C 0.031 3.969 19 N -0.917 5.917 20 Si 0.965 3.035 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.280 1.280 24 C 0.136 3.864 25 H 0.069 0.931 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.389 0.611 39 H 0.275 0.725 40 H 0.078 0.922 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.645 -11.677 2.398 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.434 6.434 6 C -0.139 4.139 7 C -0.148 4.148 8 C -0.731 4.731 9 S 2.733 3.267 10 O -0.982 6.982 11 O -0.986 6.986 12 N -0.884 5.884 13 C -0.019 4.019 14 C 0.177 3.823 15 O -0.388 6.388 16 C -0.589 4.589 17 H 0.090 0.910 18 C -0.169 4.169 19 N -0.558 5.558 20 Si 0.791 3.209 21 H -0.193 1.193 22 H -0.208 1.208 23 H -0.206 1.206 24 C 0.011 3.989 25 H 0.088 0.912 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.244 0.756 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.035 -13.350 2.725 18.856 hybrid contribution 0.275 1.166 -0.743 1.410 sum -12.760 -12.184 1.981 17.754 Atomic orbital electron populations 1.21826 0.90360 1.04366 1.03795 1.23305 0.97157 0.79283 1.02539 1.86515 1.23899 1.33685 1.83579 1.24206 0.80704 0.93275 0.71126 1.90682 1.61169 1.44578 1.47014 1.21434 0.93125 0.90120 1.09251 1.21209 0.96151 0.92638 1.04845 1.30382 1.22537 1.05527 1.14653 1.04022 0.79197 0.70803 0.72669 1.93508 1.80326 1.77977 1.46375 1.93509 1.80384 1.78025 1.46712 1.59659 1.81840 1.28039 1.18839 1.23469 0.99694 0.85836 0.92899 1.19960 0.80893 0.90280 0.91140 1.85946 1.24509 1.63459 1.64914 1.21824 1.13501 1.02866 1.20703 0.91035 1.25715 0.96497 1.00886 0.93846 1.69316 1.29780 1.34074 1.22677 0.85399 0.78803 0.78862 0.77864 1.19279 1.20811 1.20605 1.22770 1.00595 0.83435 0.92090 0.91229 0.88284 0.91166 0.91432 0.91356 0.84288 0.84514 0.89861 0.90147 0.82643 0.82189 0.90879 0.92331 0.75585 0.91518 0.90343 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 71.98 0.74 -0.60 16 2 C 0.05 0.77 6.19 71.98 0.45 1.21 16 3 O -0.36 -6.76 10.22 -51.43 -0.53 -7.29 16 4 C 0.46 9.85 7.96 71.24 0.57 10.42 16 5 O -0.54 -15.32 15.73 21.96 0.35 -14.97 16 6 C -0.10 -1.63 5.81 29.85 0.17 -1.46 16 7 C -0.11 -2.39 4.51 30.60 0.14 -2.26 16 8 C -0.60 -13.92 6.18 71.98 0.44 -13.47 16 9 S 2.63 90.19 5.96 -56.49 -0.34 89.86 16 10 O -0.99 -38.56 18.07 -127.65 -2.31 -40.87 16 11 O -1.00 -40.17 18.07 -127.65 -2.31 -42.48 16 12 N -1.05 -39.92 4.10 -549.94 -2.25 -42.18 16 13 C 0.11 4.56 8.13 83.27 0.68 5.24 16 14 C 0.22 9.90 1.58 -11.12 -0.02 9.88 16 15 O -0.58 -26.41 13.55 -148.98 -2.02 -28.43 16 16 C -0.55 -26.58 8.70 25.60 0.22 -26.35 16 17 H 0.07 3.38 7.81 -2.91 -0.02 3.35 16 18 C 0.03 1.47 5.39 84.65 0.46 1.93 16 19 N -0.92 -44.92 11.01 21.45 0.24 -44.68 16 20 Si 0.96 38.86 29.54 68.60 2.03 40.88 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 24 C 0.14 5.34 8.10 83.18 0.67 6.01 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 29 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 30 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.90 8.10 -2.39 -0.02 1.88 16 33 H 0.08 1.88 8.10 -2.39 -0.02 1.86 16 34 H 0.16 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.16 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.07 3.13 8.10 -2.39 -0.02 3.11 16 37 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.39 18.67 6.32 -74.05 -0.47 18.21 16 39 H 0.27 12.77 8.31 -92.71 -0.77 12.00 16 40 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.09 3.36 8.10 -2.39 -0.02 3.34 16 Total: -1.00 -66.39 364.79 -2.05 -68.44 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.57 Total: 31.16 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 4.52 Total: -9.45 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -2.02 Total: -86.86 kcal Atomic # 8 Polarization: -127.22 SS G_CDS: -6.81 Total: -134.04 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.88 kcal Atomic # 16 Polarization: 90.19 SS G_CDS: -0.34 Total: 89.86 kcal Total: -66.39 -2.05 -68.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440094724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.793 kcal (2) G-P(sol) polarization free energy of solvation -66.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds