Wall clock time and date at job start Fri Apr 10 2020 14:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99993 * 2 1 4 4 O 1.20822 * 120.00386 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99538 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.47434 * 59.99661 * 5 3 2 7 7 C 1.53000 * 109.46903 * 299.99339 * 5 3 2 8 8 C 1.53001 * 109.46563 * 179.97438 * 5 3 2 9 9 S 1.81406 * 109.46732 * 184.99853 * 8 5 3 10 10 O 1.42096 * 110.54589 * 68.37018 * 9 8 5 11 11 O 1.42098 * 110.54091 * 291.62185 * 9 8 5 12 12 N 1.65601 * 104.45092 * 179.97438 * 9 8 5 13 13 C 1.47020 * 125.64624 * 269.95971 * 12 9 8 14 14 C 1.54374 * 107.28963 * 181.12418 * 13 12 9 15 15 C 1.55169 * 102.91612 * 22.13559 * 14 13 12 16 16 O 1.42900 * 110.99902 * 82.64156 * 15 14 13 17 17 C 1.50700 * 111.00251 * 206.45289 * 15 14 13 18 18 H 1.07999 * 119.99988 * 115.41972 * 17 15 14 19 19 C 1.37885 * 120.00047 * 295.42152 * 17 15 14 20 20 N 1.31518 * 119.99792 * 359.72305 * 19 17 15 21 21 Si 1.86795 * 120.00009 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47021 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47081 * 119.99727 * 21 19 17 24 24 H 1.48501 * 109.47213 * 240.00099 * 21 19 17 25 25 C 1.47423 * 125.65126 * 89.99455 * 12 9 8 26 26 H 1.08995 * 109.47695 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46885 * 300.00367 * 1 2 3 28 28 H 1.09003 * 109.46917 * 59.99867 * 1 2 3 29 29 H 1.09003 * 109.47214 * 180.02562 * 7 5 3 30 30 H 1.09002 * 109.47355 * 300.00410 * 7 5 3 31 31 H 1.09002 * 109.47157 * 60.00711 * 7 5 3 32 32 H 1.08994 * 109.47663 * 65.00059 * 8 5 3 33 33 H 1.09000 * 109.47093 * 304.99351 * 8 5 3 34 34 H 1.08992 * 109.88250 * 300.50859 * 13 12 9 35 35 H 1.09003 * 109.88656 * 61.52277 * 13 12 9 36 36 H 1.09000 * 110.70693 * 263.79996 * 14 13 12 37 37 H 1.08995 * 110.75673 * 140.50194 * 14 13 12 38 38 H 0.96701 * 114.00031 * 64.58556 * 16 15 14 39 39 H 0.97000 * 119.99468 * 179.97438 * 20 19 17 40 40 H 1.09009 * 110.36200 * 36.99785 * 25 12 9 41 41 H 1.09002 * 110.37071 * 274.68052 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9557 0.7808 -0.8907 7 6 4.1138 0.5810 1.2484 8 6 4.0002 2.7420 -0.0011 9 16 5.8055 2.8386 -0.1508 10 8 6.2230 2.4058 -1.4383 11 8 6.4305 2.3455 1.0262 12 7 6.1348 4.4615 -0.1394 13 6 6.2057 5.3297 -1.3238 14 6 6.5657 6.7481 -0.8320 15 6 7.2315 6.4796 0.5436 16 8 8.6077 6.1281 0.3866 17 6 7.0815 7.6685 1.4574 18 1 6.4999 7.5833 2.3634 19 6 7.6869 8.8652 1.1369 20 7 8.3997 8.9674 0.0364 21 14 7.5016 10.3386 2.2700 22 1 6.6619 9.9638 3.4361 23 1 8.8413 10.7712 2.7426 24 1 6.8537 11.4524 1.5317 25 6 6.4061 5.2749 1.0598 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 5.2023 0.6383 1.2483 30 1 3.7244 1.0750 2.1386 31 1 3.8048 -0.4643 1.2484 32 1 3.6871 3.2138 0.9302 33 1 3.5377 3.2573 -0.8429 34 1 6.9766 4.9670 -2.0036 35 1 5.2411 5.3443 -1.8312 36 1 5.6678 7.3545 -0.7140 37 1 7.2687 7.2265 -1.5139 38 1 9.1550 6.8358 0.0195 39 1 8.8253 9.8094 -0.1893 40 1 6.9843 4.7013 1.7843 41 1 5.4720 5.6178 1.5049 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592078179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:58 Heat of formation + Delta-G solvation = -204.086067 kcal Electronic energy + Delta-G solvation = -26224.250669 eV Core-core repulsion = 22231.802824 eV Total energy + Delta-G solvation = -3992.447845 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.86863 -38.04401 -37.03688 -36.91986 -35.83468 -35.13615 -34.26200 -32.15881 -29.30525 -28.48854 -28.27397 -27.61584 -24.86514 -24.33160 -21.60196 -20.68554 -19.83113 -18.69674 -18.17665 -17.53246 -17.15299 -16.82275 -16.55522 -16.01196 -15.76473 -14.97112 -14.80106 -14.49426 -14.17523 -14.02951 -13.61035 -13.38390 -13.18417 -13.01609 -12.72621 -12.45769 -12.39883 -11.93927 -11.88884 -11.80402 -11.75875 -11.66571 -11.64626 -11.32913 -11.13634 -11.05050 -10.95833 -10.79694 -10.54301 -10.48044 -10.40328 -10.01427 -9.38849 -8.69066 -8.37485 -8.17013 -6.28268 -4.36273 0.33784 1.87273 2.33777 2.91725 3.18751 3.28115 3.31871 3.86223 4.11417 4.16408 4.26238 4.45533 4.48803 4.72648 4.77327 4.84439 4.98305 5.10344 5.18376 5.31409 5.40013 5.43592 5.63864 5.79271 5.87201 5.94493 5.98448 6.03501 6.24321 6.40652 6.59907 6.77588 6.92943 7.03029 7.34596 7.37872 7.40751 7.74645 8.02752 8.66132 9.32626 9.47544 10.79291 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.022152 B = 0.003327 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.707418 B = 8414.771880 C = 8945.280302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.473 3.527 4 O -0.498 6.498 5 C -0.068 4.068 6 H 0.122 0.878 7 C -0.178 4.178 8 C -0.634 4.634 9 S 2.630 3.370 10 O -0.955 6.955 11 O -0.946 6.946 12 N -1.002 6.002 13 C 0.120 3.880 14 C -0.134 4.134 15 C 0.253 3.747 16 O -0.582 6.582 17 C -0.536 4.536 18 H 0.066 0.934 19 C 0.072 3.928 20 N -0.895 5.895 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.283 1.283 25 C 0.128 3.872 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.383 0.617 39 H 0.268 0.732 40 H 0.078 0.922 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.206 -14.268 -1.501 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.384 6.384 5 C -0.088 4.088 6 H 0.140 0.860 7 C -0.235 4.235 8 C -0.759 4.759 9 S 2.722 3.278 10 O -0.945 6.945 11 O -0.936 6.936 12 N -0.842 5.842 13 C -0.005 4.005 14 C -0.174 4.174 15 C 0.211 3.789 16 O -0.391 6.391 17 C -0.574 4.574 18 H 0.084 0.916 19 C -0.131 4.131 20 N -0.534 5.534 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.209 1.209 25 C 0.003 3.997 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.234 0.766 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.963 -15.206 -1.427 19.400 hybrid contribution -1.001 1.913 0.253 2.174 sum -12.964 -13.293 -1.174 18.605 Atomic orbital electron populations 1.23308 0.76092 1.03827 1.02730 1.86496 1.23572 1.33126 1.84096 1.23416 0.91441 0.81456 0.72296 1.90685 1.66860 1.36314 1.44553 1.20660 0.89509 0.95016 1.03661 0.86019 1.22283 1.03960 1.01852 0.95375 1.30922 1.30075 1.01585 1.13359 1.04404 0.76595 0.72434 0.74325 1.93571 1.79402 1.80374 1.41201 1.93571 1.72079 1.78241 1.49734 1.58360 1.84187 1.26006 1.15601 1.21850 0.99472 0.92740 0.86389 1.23199 1.01478 0.91950 1.00795 1.19567 0.79870 0.89049 0.90410 1.86119 1.20813 1.44725 1.87477 1.21531 1.32891 0.94898 1.08108 0.91616 1.25003 0.94147 0.98886 0.95057 1.69666 1.33022 1.26925 1.23830 0.86366 0.78041 0.81857 0.80683 1.19618 1.20801 1.20908 1.22234 0.98913 0.92717 0.85802 0.87906 0.91765 0.91772 0.88794 0.90655 0.89770 0.84064 0.84204 0.91878 0.93365 0.91464 0.89789 0.76628 0.92215 0.90368 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.54 10.47 -39.26 -0.41 -3.95 16 3 C 0.47 5.56 7.25 36.01 0.26 5.82 16 4 O -0.50 -7.14 15.67 -18.75 -0.29 -7.44 16 5 C -0.07 -0.74 2.82 -91.77 -0.26 -1.00 16 6 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 7 C -0.18 -1.76 8.82 37.16 0.33 -1.44 16 8 C -0.63 -7.76 4.97 37.16 0.18 -7.57 16 9 S 2.63 41.82 5.30 -107.50 -0.57 41.25 16 10 O -0.96 -17.21 17.60 -57.54 -1.01 -18.22 16 11 O -0.95 -16.86 15.03 -57.54 -0.86 -17.73 16 12 N -1.00 -18.45 3.62 -111.40 -0.40 -18.86 16 13 C 0.12 2.24 6.89 -3.04 -0.02 2.21 16 14 C -0.13 -2.88 5.52 -24.86 -0.14 -3.02 16 15 C 0.25 6.00 0.88 -89.62 -0.08 5.92 16 16 O -0.58 -14.87 13.17 -35.23 -0.46 -15.33 16 17 C -0.54 -13.60 8.25 -34.44 -0.28 -13.89 16 18 H 0.07 1.64 7.78 -52.49 -0.41 1.23 16 19 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 20 N -0.90 -22.86 10.76 55.43 0.60 -22.27 16 21 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.13 2.63 6.25 -2.54 -0.02 2.61 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.09 1.03 5.61 -51.93 -0.29 0.74 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 32 H 0.14 1.63 8.14 -51.93 -0.42 1.20 16 33 H 0.14 1.61 7.96 -51.92 -0.41 1.20 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 37 H 0.08 1.90 7.69 -51.93 -0.40 1.50 16 38 H 0.38 9.82 7.24 45.56 0.33 10.15 16 39 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 40 H 0.08 1.65 7.67 -51.92 -0.40 1.26 16 41 H 0.07 1.27 8.03 -51.93 -0.42 0.86 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -31.64 351.52 -7.55 -39.19 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.35 Total: 10.49 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 0.95 Total: -7.32 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.19 Total: -41.12 kcal Atomic # 8 Polarization: -59.62 SS G_CDS: -3.05 Total: -62.67 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 41.82 SS G_CDS: -0.57 Total: 41.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.64 -7.55 -39.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.896 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds