Wall clock time and date at job start Fri Apr 10 2020 14:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99993 * 2 1 4 4 O 1.20822 * 120.00386 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99538 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.47434 * 59.99661 * 5 3 2 7 7 C 1.53000 * 109.46903 * 299.99339 * 5 3 2 8 8 C 1.53001 * 109.46563 * 179.97438 * 5 3 2 9 9 S 1.81406 * 109.46732 * 184.99853 * 8 5 3 10 10 O 1.42096 * 110.54589 * 68.37018 * 9 8 5 11 11 O 1.42098 * 110.54091 * 291.62185 * 9 8 5 12 12 N 1.65601 * 104.45092 * 179.97438 * 9 8 5 13 13 C 1.47020 * 125.64624 * 269.95971 * 12 9 8 14 14 C 1.54374 * 107.28963 * 181.12418 * 13 12 9 15 15 C 1.55169 * 102.91612 * 22.13559 * 14 13 12 16 16 O 1.42900 * 110.99902 * 82.64156 * 15 14 13 17 17 C 1.50700 * 111.00251 * 206.45289 * 15 14 13 18 18 H 1.07999 * 119.99988 * 115.41972 * 17 15 14 19 19 C 1.37885 * 120.00047 * 295.42152 * 17 15 14 20 20 N 1.31518 * 119.99792 * 359.72305 * 19 17 15 21 21 Si 1.86795 * 120.00009 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47021 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47081 * 119.99727 * 21 19 17 24 24 H 1.48501 * 109.47213 * 240.00099 * 21 19 17 25 25 C 1.47423 * 125.65126 * 89.99455 * 12 9 8 26 26 H 1.08995 * 109.47695 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46885 * 300.00367 * 1 2 3 28 28 H 1.09003 * 109.46917 * 59.99867 * 1 2 3 29 29 H 1.09003 * 109.47214 * 180.02562 * 7 5 3 30 30 H 1.09002 * 109.47355 * 300.00410 * 7 5 3 31 31 H 1.09002 * 109.47157 * 60.00711 * 7 5 3 32 32 H 1.08994 * 109.47663 * 65.00059 * 8 5 3 33 33 H 1.09000 * 109.47093 * 304.99351 * 8 5 3 34 34 H 1.08992 * 109.88250 * 300.50859 * 13 12 9 35 35 H 1.09003 * 109.88656 * 61.52277 * 13 12 9 36 36 H 1.09000 * 110.70693 * 263.79996 * 14 13 12 37 37 H 1.08995 * 110.75673 * 140.50194 * 14 13 12 38 38 H 0.96701 * 114.00031 * 64.58556 * 16 15 14 39 39 H 0.97000 * 119.99468 * 179.97438 * 20 19 17 40 40 H 1.09009 * 110.36200 * 36.99785 * 25 12 9 41 41 H 1.09002 * 110.37071 * 274.68052 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9557 0.7808 -0.8907 7 6 4.1138 0.5810 1.2484 8 6 4.0002 2.7420 -0.0011 9 16 5.8055 2.8386 -0.1508 10 8 6.2230 2.4058 -1.4383 11 8 6.4305 2.3455 1.0262 12 7 6.1348 4.4615 -0.1394 13 6 6.2057 5.3297 -1.3238 14 6 6.5657 6.7481 -0.8320 15 6 7.2315 6.4796 0.5436 16 8 8.6077 6.1281 0.3866 17 6 7.0815 7.6685 1.4574 18 1 6.4999 7.5833 2.3634 19 6 7.6869 8.8652 1.1369 20 7 8.3997 8.9674 0.0364 21 14 7.5016 10.3386 2.2700 22 1 6.6619 9.9638 3.4361 23 1 8.8413 10.7712 2.7426 24 1 6.8537 11.4524 1.5317 25 6 6.4061 5.2749 1.0598 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 5.2023 0.6383 1.2483 30 1 3.7244 1.0750 2.1386 31 1 3.8048 -0.4643 1.2484 32 1 3.6871 3.2138 0.9302 33 1 3.5377 3.2573 -0.8429 34 1 6.9766 4.9670 -2.0036 35 1 5.2411 5.3443 -1.8312 36 1 5.6678 7.3545 -0.7140 37 1 7.2687 7.2265 -1.5139 38 1 9.1550 6.8358 0.0195 39 1 8.8253 9.8094 -0.1893 40 1 6.9843 4.7013 1.7843 41 1 5.4720 5.6178 1.5049 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592078179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:56 Heat of formation + Delta-G solvation = -228.196322 kcal Electronic energy + Delta-G solvation = -26225.296168 eV Core-core repulsion = 22231.802824 eV Total energy + Delta-G solvation = -3993.493344 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.72286 -39.71864 -38.28573 -37.83682 -37.14806 -36.13551 -35.97589 -34.11560 -30.95616 -29.94888 -29.26290 -28.40763 -26.68590 -25.16957 -23.11625 -21.61326 -21.56601 -19.95931 -19.36496 -19.01715 -18.46659 -17.82326 -17.49741 -17.21882 -17.02362 -16.87647 -16.21184 -15.78656 -15.58008 -15.13136 -14.91858 -14.45186 -14.32349 -14.20001 -14.03438 -13.80715 -13.62711 -13.38377 -13.18374 -13.16490 -13.12254 -12.88250 -12.74881 -12.65734 -12.53686 -12.45603 -12.25200 -12.17262 -12.04307 -11.85425 -11.82230 -11.45909 -11.18335 -10.60102 -10.07305 -9.84406 -8.19351 -6.33813 -0.91770 1.00050 1.43736 1.46509 1.48954 1.57909 1.70041 2.42246 2.75758 2.99531 3.06517 3.08544 3.51550 3.65842 3.76374 3.92630 4.10969 4.18579 4.28557 4.31570 4.33900 4.42046 4.51220 4.63747 4.69782 4.70623 4.75045 4.79532 4.97258 5.13135 5.23330 5.25307 5.27884 5.42756 5.52160 5.61024 5.83979 6.14330 6.56690 6.71766 7.37306 7.48606 8.86918 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.022152 B = 0.003327 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.707418 B = 8414.771880 C = 8945.280302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.479 3.521 4 O -0.528 6.528 5 C -0.076 4.076 6 H 0.142 0.858 7 C -0.181 4.181 8 C -0.609 4.609 9 S 2.639 3.361 10 O -0.979 6.979 11 O -0.970 6.970 12 N -1.011 6.011 13 C 0.122 3.878 14 C -0.127 4.127 15 C 0.229 3.771 16 O -0.596 6.596 17 C -0.555 4.555 18 H 0.064 0.936 19 C 0.031 3.969 20 N -0.912 5.912 21 Si 0.961 3.039 22 H -0.269 1.269 23 H -0.284 1.284 24 H -0.279 1.279 25 C 0.133 3.867 26 H 0.135 0.865 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.377 0.623 39 H 0.269 0.731 40 H 0.065 0.935 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.324 -15.254 -1.349 20.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.322 3.678 4 O -0.417 6.417 5 C -0.096 4.096 6 H 0.160 0.840 7 C -0.238 4.238 8 C -0.739 4.739 9 S 2.735 3.265 10 O -0.969 6.969 11 O -0.961 6.961 12 N -0.849 5.849 13 C -0.003 4.003 14 C -0.167 4.167 15 C 0.188 3.812 16 O -0.405 6.405 17 C -0.594 4.594 18 H 0.082 0.918 19 C -0.170 4.170 20 N -0.552 5.552 21 Si 0.787 3.213 22 H -0.193 1.193 23 H -0.210 1.210 24 H -0.205 1.205 25 C 0.008 3.992 26 H 0.153 0.847 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.171 0.829 33 H 0.173 0.827 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.227 0.773 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.038 -16.206 -1.282 21.479 hybrid contribution -0.411 2.109 0.207 2.158 sum -14.449 -14.098 -1.075 20.216 Atomic orbital electron populations 1.23624 0.74409 1.06001 1.02685 1.86485 1.25176 1.31982 1.83483 1.23396 0.91441 0.81538 0.71474 1.90680 1.67504 1.37288 1.46195 1.20806 0.89563 0.94061 1.05181 0.84003 1.22337 1.03071 1.03348 0.95035 1.30612 1.25129 1.03406 1.14772 1.04051 0.78006 0.71118 0.73279 1.93540 1.81019 1.80263 1.42120 1.93544 1.74041 1.78180 1.50321 1.58352 1.85480 1.26444 1.14592 1.21818 1.01241 0.90832 0.86438 1.23001 1.00696 0.93748 0.99220 1.19912 0.79317 0.90255 0.91727 1.86113 1.22102 1.44688 1.87551 1.21805 1.33199 0.95895 1.08488 0.91812 1.25672 0.93982 1.01086 0.96256 1.69752 1.33284 1.27390 1.24738 0.85461 0.77692 0.79026 0.79085 1.19317 1.21041 1.20470 1.22075 0.99117 0.91738 0.86275 0.84691 0.91863 0.91835 0.90023 0.90344 0.87498 0.82858 0.82743 0.92749 0.89569 0.91362 0.91762 0.77322 0.92150 0.91672 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.49 16 2 O -0.36 -6.04 10.47 -51.42 -0.54 -6.58 16 3 C 0.48 10.00 7.25 71.24 0.52 10.51 16 4 O -0.53 -13.92 15.67 21.98 0.34 -13.57 16 5 C -0.08 -1.45 2.82 -11.54 -0.03 -1.48 16 6 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 7 C -0.18 -3.17 8.82 71.98 0.63 -2.54 16 8 C -0.61 -13.35 4.97 71.98 0.36 -13.00 16 9 S 2.64 80.70 5.30 -56.49 -0.30 80.41 16 10 O -0.98 -34.24 17.60 -127.65 -2.25 -36.48 16 11 O -0.97 -34.12 15.03 -127.65 -1.92 -36.04 16 12 N -1.01 -36.33 3.62 -506.35 -1.83 -38.16 16 13 C 0.12 4.40 6.89 86.75 0.60 5.00 16 14 C -0.13 -5.45 5.52 31.80 0.18 -5.28 16 15 C 0.23 10.98 0.88 -10.15 -0.01 10.97 16 16 O -0.60 -31.29 13.17 -148.98 -1.96 -33.25 16 17 C -0.56 -28.36 8.25 25.60 0.21 -28.15 16 18 H 0.06 3.19 7.78 -2.91 -0.02 3.16 16 19 C 0.03 1.56 5.29 84.66 0.45 2.01 16 20 N -0.91 -47.17 10.76 21.45 0.23 -46.94 16 21 Si 0.96 40.76 29.54 68.60 2.03 42.79 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 25 C 0.13 5.43 6.25 86.85 0.54 5.97 16 26 H 0.14 0.65 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 28 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 29 H 0.08 1.68 5.61 -2.39 -0.01 1.66 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.11 1.36 8.11 -2.39 -0.02 1.34 16 32 H 0.15 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.15 3.06 7.96 -2.39 -0.02 3.04 16 34 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.07 2.86 8.03 -2.39 -0.02 2.84 16 37 H 0.06 2.97 7.69 -2.39 -0.02 2.95 16 38 H 0.38 20.09 7.24 -74.06 -0.54 19.55 16 39 H 0.27 13.28 8.31 -92.71 -0.77 12.50 16 40 H 0.06 2.79 7.67 -2.38 -0.02 2.77 16 41 H 0.09 3.23 8.03 -2.39 -0.02 3.21 16 Total: -1.00 -67.86 351.52 -1.05 -68.91 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.51 Total: 33.41 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 4.64 Total: -14.49 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.60 Total: -85.10 kcal Atomic # 8 Polarization: -119.61 SS G_CDS: -6.32 Total: -125.93 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Atomic # 16 Polarization: 80.70 SS G_CDS: -0.30 Total: 80.41 kcal Total: -67.86 -1.05 -68.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.291 kcal (2) G-P(sol) polarization free energy of solvation -67.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds