Wall clock time and date at job start Fri Apr 10 2020 14:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99492 * 2 1 4 4 O 1.20817 * 120.00309 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99442 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47304 * 59.99819 * 5 3 2 7 7 C 1.53003 * 109.47140 * 300.00030 * 5 3 2 8 8 C 1.53002 * 109.46825 * 180.02562 * 5 3 2 9 9 S 1.81398 * 109.46904 * 184.99958 * 8 5 3 10 10 O 1.42104 * 110.54559 * 68.37364 * 9 8 5 11 11 O 1.42097 * 110.54335 * 291.62472 * 9 8 5 12 12 N 1.65598 * 104.45183 * 179.97438 * 9 8 5 13 13 C 1.47471 * 125.62816 * 270.00176 * 12 9 8 14 14 C 1.54906 * 104.81210 * 204.06537 * 13 12 9 15 15 C 1.55156 * 101.61451 * 323.04512 * 14 13 12 16 16 O 1.42903 * 110.71799 * 276.93612 * 15 14 13 17 17 C 1.50704 * 110.71965 * 153.84937 * 15 14 13 18 18 H 1.08008 * 119.99595 * 241.45457 * 17 15 14 19 19 C 1.37875 * 120.00240 * 61.44641 * 17 15 14 20 20 N 1.31515 * 119.99829 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 119.99702 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47524 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46970 * 120.00200 * 21 19 17 24 24 H 1.48502 * 109.47162 * 239.99790 * 21 19 17 25 25 C 1.47017 * 125.65214 * 89.99629 * 12 9 8 26 26 H 1.09004 * 109.47077 * 60.00623 * 1 2 3 27 27 H 1.09003 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47682 * 300.00501 * 1 2 3 29 29 H 1.08994 * 109.46955 * 60.00252 * 7 5 3 30 30 H 1.09001 * 109.46969 * 180.02562 * 7 5 3 31 31 H 1.09001 * 109.46850 * 300.00067 * 7 5 3 32 32 H 1.08998 * 109.47160 * 65.00464 * 8 5 3 33 33 H 1.08998 * 109.47049 * 304.99459 * 8 5 3 34 34 H 1.09008 * 110.34870 * 85.24666 * 13 12 9 35 35 H 1.09001 * 110.40581 * 322.91702 * 13 12 9 36 36 H 1.09002 * 111.00655 * 204.94912 * 14 13 12 37 37 H 1.09002 * 111.00329 * 81.13838 * 14 13 12 38 38 H 0.96698 * 114.00549 * 298.55211 * 16 15 14 39 39 H 0.97005 * 119.99288 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.88206 * 59.55937 * 25 12 9 41 41 H 1.09007 * 109.88177 * 298.39809 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8891 7 6 4.1128 0.5816 1.2502 8 6 4.0000 2.7422 0.0011 9 16 5.8053 2.8390 -0.1472 10 8 6.2238 2.4069 -1.4347 11 8 6.4296 2.3453 1.0299 12 7 6.1346 4.4619 -0.1348 13 6 6.2056 5.3331 -1.3225 14 6 7.1083 6.5162 -0.8923 15 6 6.6806 6.7141 0.5859 16 8 5.4983 7.5127 0.6675 17 6 7.7970 7.3348 1.3855 18 1 8.2254 6.8000 2.2204 19 6 8.2718 8.5854 1.0512 20 7 7.7500 9.2368 0.0349 21 14 9.6561 9.3543 2.0420 22 1 10.0658 8.4243 3.1248 23 1 10.8150 9.6177 1.1516 24 1 9.1886 10.6322 2.6368 25 6 6.4042 5.2724 1.0617 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.8038 -0.4636 1.2502 30 1 5.2013 0.6390 1.2508 31 1 3.7227 1.0759 2.1399 32 1 3.6863 3.2135 0.9325 33 1 3.5382 3.2579 -0.8408 34 1 5.2115 5.6919 -1.5895 35 1 6.6543 4.7985 -2.1598 36 1 6.8939 7.4065 -1.4837 37 1 8.1627 6.2485 -0.9615 38 1 5.6008 8.4050 0.3093 39 1 8.0838 10.1168 -0.2000 40 1 7.2764 4.8813 1.5855 41 1 5.5365 5.2596 1.7214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592078181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:01 Heat of formation + Delta-G solvation = -204.245159 kcal Electronic energy + Delta-G solvation = -26235.443928 eV Core-core repulsion = 22242.989184 eV Total energy + Delta-G solvation = -3992.454744 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84846 -38.08122 -37.03036 -36.94156 -35.87087 -35.13508 -34.30663 -32.19933 -29.23277 -28.46200 -28.30190 -27.59473 -24.84258 -24.31798 -21.66890 -20.69204 -19.81839 -18.70158 -18.18370 -17.50548 -17.12407 -16.83550 -16.53145 -16.01101 -15.86401 -14.95403 -14.74502 -14.48664 -14.32282 -14.01279 -13.59243 -13.30409 -13.23548 -12.97836 -12.83425 -12.41237 -12.14521 -12.10647 -11.91616 -11.79739 -11.71645 -11.68889 -11.60988 -11.32819 -11.11654 -11.08583 -10.96072 -10.85986 -10.55625 -10.44630 -10.36490 -10.09696 -9.34426 -8.66463 -8.43888 -8.18960 -6.27259 -4.34524 0.32921 1.89561 2.35402 2.88566 3.20271 3.29389 3.34239 3.84356 4.09879 4.16779 4.28045 4.46587 4.48002 4.73788 4.79013 4.86377 4.99830 5.12013 5.20108 5.32290 5.39540 5.43636 5.67605 5.80582 5.87990 5.99512 6.00127 6.05349 6.20947 6.33359 6.64120 6.76467 6.94572 7.00992 7.36671 7.40161 7.43086 7.75178 8.04236 8.68115 9.31517 9.40207 10.80261 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.025887 B = 0.003237 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.383036 B = 8649.027761 C = 8920.615614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.496 6.496 5 C -0.068 4.068 6 H 0.122 0.878 7 C -0.178 4.178 8 C -0.632 4.632 9 S 2.631 3.369 10 O -0.956 6.956 11 O -0.948 6.948 12 N -1.004 6.004 13 C 0.111 3.889 14 C -0.129 4.129 15 C 0.249 3.751 16 O -0.586 6.586 17 C -0.534 4.534 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.896 5.896 21 Si 0.903 3.097 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.135 3.865 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.382 0.618 39 H 0.267 0.733 40 H 0.078 0.922 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.231 -15.149 -1.824 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.382 6.382 5 C -0.088 4.088 6 H 0.140 0.860 7 C -0.235 4.235 8 C -0.758 4.758 9 S 2.723 3.277 10 O -0.946 6.946 11 O -0.938 6.938 12 N -0.844 5.844 13 C -0.014 4.014 14 C -0.169 4.169 15 C 0.208 3.792 16 O -0.395 6.395 17 C -0.573 4.573 18 H 0.084 0.916 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C 0.010 3.990 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.233 0.767 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.105 -16.020 -1.710 19.018 hybrid contribution -0.099 1.496 0.197 1.512 sum -10.204 -14.524 -1.513 17.815 Atomic orbital electron populations 1.23306 0.76101 1.03806 1.02750 1.86493 1.23569 1.33136 1.84136 1.23409 0.91439 0.81465 0.72372 1.90693 1.66826 1.36303 1.44424 1.20668 0.89560 0.95013 1.03606 0.86034 1.22283 1.03902 1.01856 0.95423 1.30894 1.29856 1.01531 1.13529 1.04390 0.76707 0.72360 0.74265 1.93572 1.79546 1.80344 1.41181 1.93569 1.72263 1.78320 1.49673 1.58426 1.84238 1.25978 1.15717 1.22246 1.00387 0.92355 0.86368 1.23272 0.98149 0.95491 1.00000 1.19475 0.83609 0.85382 0.90766 1.86102 1.37567 1.29666 1.86208 1.21589 1.17761 1.02469 1.15477 0.91623 1.24995 0.96663 0.96765 0.94701 1.69710 1.42663 1.14025 1.27097 0.86368 0.81438 0.79111 0.80073 1.19571 1.20877 1.20855 1.21892 1.00110 0.91902 0.85055 0.91768 0.87919 0.91759 0.89775 0.88839 0.90644 0.84009 0.84132 0.92392 0.91281 0.89494 0.91377 0.76742 0.92311 0.90332 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.62 10.47 -39.26 -0.41 -4.03 16 3 C 0.47 5.70 7.26 36.01 0.26 5.96 16 4 O -0.50 -7.36 15.67 -18.74 -0.29 -7.66 16 5 C -0.07 -0.76 2.83 -91.77 -0.26 -1.01 16 6 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 7 C -0.18 -1.78 8.81 37.16 0.33 -1.45 16 8 C -0.63 -8.01 4.97 37.16 0.18 -7.82 16 9 S 2.63 41.13 5.30 -107.50 -0.57 40.56 16 10 O -0.96 -16.67 17.28 -57.54 -0.99 -17.66 16 11 O -0.95 -16.38 15.35 -57.54 -0.88 -17.27 16 12 N -1.00 -18.36 3.62 -111.39 -0.40 -18.77 16 13 C 0.11 2.05 7.07 -2.50 -0.02 2.04 16 14 C -0.13 -2.81 5.46 -24.58 -0.13 -2.94 16 15 C 0.25 5.85 0.85 -89.94 -0.08 5.77 16 16 O -0.59 -14.21 13.08 -35.23 -0.46 -14.67 16 17 C -0.53 -13.74 8.21 -34.44 -0.28 -14.02 16 18 H 0.07 1.69 7.57 -52.48 -0.40 1.29 16 19 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 20 N -0.90 -22.79 10.67 55.43 0.59 -22.20 16 21 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.13 2.80 6.25 -3.07 -0.02 2.78 16 26 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 30 H 0.09 1.02 5.61 -51.93 -0.29 0.73 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.14 1.75 8.14 -51.93 -0.42 1.33 16 33 H 0.14 1.71 7.96 -51.92 -0.41 1.30 16 34 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.07 1.18 7.67 -51.93 -0.40 0.78 16 36 H 0.09 1.95 7.54 -51.93 -0.39 1.56 16 37 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 38 H 0.38 9.36 7.46 45.56 0.34 9.70 16 39 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 40 H 0.08 1.65 7.66 -51.93 -0.40 1.25 16 41 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -31.05 350.81 -7.50 -38.56 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.30 Total: 10.40 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 0.96 Total: -7.67 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.19 Total: -40.96 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -3.04 Total: -61.28 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 41.13 SS G_CDS: -0.57 Total: 40.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.05 -7.50 -38.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.688 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds