Wall clock time and date at job start Fri Apr 10 2020 14:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99492 * 2 1 4 4 O 1.20817 * 120.00309 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99442 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47304 * 59.99819 * 5 3 2 7 7 C 1.53003 * 109.47140 * 300.00030 * 5 3 2 8 8 C 1.53002 * 109.46825 * 180.02562 * 5 3 2 9 9 S 1.81398 * 109.46904 * 184.99958 * 8 5 3 10 10 O 1.42104 * 110.54559 * 68.37364 * 9 8 5 11 11 O 1.42097 * 110.54335 * 291.62472 * 9 8 5 12 12 N 1.65598 * 104.45183 * 179.97438 * 9 8 5 13 13 C 1.47471 * 125.62816 * 270.00176 * 12 9 8 14 14 C 1.54906 * 104.81210 * 204.06537 * 13 12 9 15 15 C 1.55156 * 101.61451 * 323.04512 * 14 13 12 16 16 O 1.42903 * 110.71799 * 276.93612 * 15 14 13 17 17 C 1.50704 * 110.71965 * 153.84937 * 15 14 13 18 18 H 1.08008 * 119.99595 * 241.45457 * 17 15 14 19 19 C 1.37875 * 120.00240 * 61.44641 * 17 15 14 20 20 N 1.31515 * 119.99829 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 119.99702 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47524 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46970 * 120.00200 * 21 19 17 24 24 H 1.48502 * 109.47162 * 239.99790 * 21 19 17 25 25 C 1.47017 * 125.65214 * 89.99629 * 12 9 8 26 26 H 1.09004 * 109.47077 * 60.00623 * 1 2 3 27 27 H 1.09003 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47682 * 300.00501 * 1 2 3 29 29 H 1.08994 * 109.46955 * 60.00252 * 7 5 3 30 30 H 1.09001 * 109.46969 * 180.02562 * 7 5 3 31 31 H 1.09001 * 109.46850 * 300.00067 * 7 5 3 32 32 H 1.08998 * 109.47160 * 65.00464 * 8 5 3 33 33 H 1.08998 * 109.47049 * 304.99459 * 8 5 3 34 34 H 1.09008 * 110.34870 * 85.24666 * 13 12 9 35 35 H 1.09001 * 110.40581 * 322.91702 * 13 12 9 36 36 H 1.09002 * 111.00655 * 204.94912 * 14 13 12 37 37 H 1.09002 * 111.00329 * 81.13838 * 14 13 12 38 38 H 0.96698 * 114.00549 * 298.55211 * 16 15 14 39 39 H 0.97005 * 119.99288 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.88206 * 59.55937 * 25 12 9 41 41 H 1.09007 * 109.88177 * 298.39809 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8891 7 6 4.1128 0.5816 1.2502 8 6 4.0000 2.7422 0.0011 9 16 5.8053 2.8390 -0.1472 10 8 6.2238 2.4069 -1.4347 11 8 6.4296 2.3453 1.0299 12 7 6.1346 4.4619 -0.1348 13 6 6.2056 5.3331 -1.3225 14 6 7.1083 6.5162 -0.8923 15 6 6.6806 6.7141 0.5859 16 8 5.4983 7.5127 0.6675 17 6 7.7970 7.3348 1.3855 18 1 8.2254 6.8000 2.2204 19 6 8.2718 8.5854 1.0512 20 7 7.7500 9.2368 0.0349 21 14 9.6561 9.3543 2.0420 22 1 10.0658 8.4243 3.1248 23 1 10.8150 9.6177 1.1516 24 1 9.1886 10.6322 2.6368 25 6 6.4042 5.2724 1.0617 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.8038 -0.4636 1.2502 30 1 5.2013 0.6390 1.2508 31 1 3.7227 1.0759 2.1399 32 1 3.6863 3.2135 0.9325 33 1 3.5382 3.2579 -0.8408 34 1 5.2115 5.6919 -1.5895 35 1 6.6543 4.7985 -2.1598 36 1 6.8939 7.4065 -1.4837 37 1 8.1627 6.2485 -0.9615 38 1 5.6008 8.4050 0.3093 39 1 8.0838 10.1168 -0.2000 40 1 7.2764 4.8813 1.5855 41 1 5.5365 5.2596 1.7214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592078181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:00 Heat of formation + Delta-G solvation = -227.632620 kcal Electronic energy + Delta-G solvation = -26236.458084 eV Core-core repulsion = 22242.989184 eV Total energy + Delta-G solvation = -3993.468901 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.73227 -39.76205 -38.30058 -37.84384 -37.17118 -36.16561 -35.97469 -34.14928 -30.88323 -29.99243 -29.26224 -28.40761 -26.68495 -25.17407 -23.21074 -21.66688 -21.51731 -19.96976 -19.41211 -18.93250 -18.50416 -17.84516 -17.49924 -17.23045 -17.08625 -16.87032 -16.18313 -15.90595 -15.59907 -15.15950 -14.78338 -14.58962 -14.37329 -14.10162 -13.95006 -13.81611 -13.66231 -13.37944 -13.23117 -13.16518 -13.10609 -12.87267 -12.76582 -12.67659 -12.61880 -12.46162 -12.23749 -12.17784 -12.09307 -11.90669 -11.86270 -11.47669 -11.15135 -10.59530 -10.07646 -9.90715 -8.20488 -6.34074 -0.92401 0.99428 1.42111 1.44736 1.47105 1.56484 1.67703 2.41513 2.71010 2.96706 3.06456 3.07228 3.50492 3.65393 3.76247 3.91717 4.07223 4.15611 4.28138 4.30741 4.32719 4.46508 4.51398 4.62874 4.64301 4.70019 4.71790 4.79420 4.99319 5.12505 5.20423 5.24314 5.27460 5.35138 5.56946 5.58963 5.82309 6.14339 6.56197 6.70317 7.36052 7.45008 8.85361 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.025887 B = 0.003237 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.383036 B = 8649.027761 C = 8920.615614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.478 3.522 4 O -0.529 6.529 5 C -0.075 4.075 6 H 0.145 0.855 7 C -0.181 4.181 8 C -0.613 4.613 9 S 2.643 3.357 10 O -0.973 6.973 11 O -0.967 6.967 12 N -1.012 6.012 13 C 0.115 3.885 14 C -0.126 4.126 15 C 0.233 3.767 16 O -0.590 6.590 17 C -0.560 4.560 18 H 0.056 0.944 19 C 0.033 3.967 20 N -0.907 5.907 21 Si 0.958 3.042 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.279 1.279 25 C 0.139 3.861 26 H 0.062 0.938 27 H 0.136 0.864 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.378 0.622 39 H 0.269 0.731 40 H 0.070 0.930 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.198 -16.599 -1.927 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.320 3.680 4 O -0.418 6.418 5 C -0.095 4.095 6 H 0.162 0.838 7 C -0.238 4.238 8 C -0.743 4.743 9 S 2.739 3.261 10 O -0.964 6.964 11 O -0.957 6.957 12 N -0.849 5.849 13 C -0.009 4.009 14 C -0.165 4.165 15 C 0.192 3.808 16 O -0.398 6.398 17 C -0.598 4.598 18 H 0.074 0.926 19 C -0.168 4.168 20 N -0.547 5.547 21 Si 0.784 3.216 22 H -0.197 1.197 23 H -0.205 1.205 24 H -0.205 1.205 25 C 0.014 3.986 26 H 0.081 0.919 27 H 0.154 0.846 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.166 0.834 33 H 0.169 0.831 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.227 0.773 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.033 -17.483 -1.821 20.753 hybrid contribution 0.113 1.857 0.230 1.875 sum -10.920 -15.626 -1.591 19.130 Atomic orbital electron populations 1.23625 0.74439 1.06031 1.02645 1.86483 1.25155 1.31911 1.83493 1.23449 0.91546 0.81527 0.71459 1.90687 1.67550 1.37396 1.46206 1.20821 0.89476 0.93916 1.05308 0.83751 1.22340 1.03177 1.03342 0.94896 1.30638 1.25841 1.03421 1.14387 1.03973 0.77725 0.70983 0.73402 1.93548 1.80839 1.80110 1.41888 1.93548 1.73854 1.78149 1.50183 1.58434 1.85465 1.26448 1.14596 1.22195 1.00571 0.91368 0.86799 1.23088 0.97897 0.96546 0.99007 1.19648 0.82974 0.86459 0.91677 1.86088 1.37935 1.29485 1.86292 1.21856 1.18930 1.03176 1.15861 0.92555 1.25613 0.98465 0.97125 0.95573 1.69776 1.43197 1.14139 1.27553 0.85518 0.79140 0.78182 0.78796 1.19749 1.20548 1.20520 1.21653 1.00211 0.90704 0.86006 0.91878 0.84575 0.91946 0.87385 0.89782 0.90557 0.83441 0.83141 0.90775 0.89781 0.90686 0.92962 0.77261 0.92124 0.91202 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.35 -6.24 10.47 -51.44 -0.54 -6.78 16 3 C 0.48 10.44 7.26 71.24 0.52 10.96 16 4 O -0.53 -14.81 15.67 21.99 0.34 -14.47 16 5 C -0.07 -1.48 2.83 -11.54 -0.03 -1.51 16 6 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 7 C -0.18 -3.20 8.81 71.98 0.63 -2.56 16 8 C -0.61 -14.28 4.97 71.98 0.36 -13.92 16 9 S 2.64 79.15 5.30 -56.49 -0.30 78.85 16 10 O -0.97 -32.43 17.28 -127.65 -2.21 -34.64 16 11 O -0.97 -32.60 15.35 -127.65 -1.96 -34.56 16 12 N -1.01 -36.20 3.62 -506.33 -1.83 -38.03 16 13 C 0.12 4.17 7.07 86.85 0.61 4.78 16 14 C -0.13 -5.51 5.46 31.98 0.17 -5.34 16 15 C 0.23 11.08 0.85 -10.35 -0.01 11.07 16 16 O -0.59 -28.75 13.08 -148.98 -1.95 -30.69 16 17 C -0.56 -29.22 8.21 25.60 0.21 -29.01 16 18 H 0.06 2.96 7.57 -2.91 -0.02 2.93 16 19 C 0.03 1.71 5.28 84.65 0.45 2.15 16 20 N -0.91 -46.48 10.67 21.45 0.23 -46.25 16 21 Si 0.96 41.41 29.54 68.60 2.03 43.43 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.14 5.79 6.25 86.73 0.54 6.33 16 26 H 0.06 0.80 8.13 -2.38 -0.02 0.78 16 27 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 29 H 0.11 1.37 8.11 -2.39 -0.02 1.35 16 30 H 0.08 1.68 5.61 -2.39 -0.01 1.67 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.15 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.15 3.30 7.96 -2.39 -0.02 3.29 16 34 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.08 2.77 7.67 -2.39 -0.02 2.75 16 36 H 0.07 3.42 7.54 -2.39 -0.02 3.40 16 37 H 0.05 2.40 8.04 -2.39 -0.02 2.38 16 38 H 0.38 18.78 7.46 -74.06 -0.55 18.22 16 39 H 0.27 13.16 8.31 -92.70 -0.77 12.38 16 40 H 0.07 2.98 7.66 -2.39 -0.02 2.96 16 41 H 0.07 2.58 8.07 -2.38 -0.02 2.56 16 Total: -1.00 -65.65 350.81 -1.04 -66.69 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.49 Total: 31.99 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 4.65 Total: -15.54 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -1.61 Total: -84.28 kcal Atomic # 8 Polarization: -114.83 SS G_CDS: -6.31 Total: -121.14 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 79.15 SS G_CDS: -0.30 Total: 78.85 kcal Total: -65.65 -1.04 -66.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.947 kcal (2) G-P(sol) polarization free energy of solvation -65.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds