Wall clock time and date at job start Fri Apr 10 2020 14:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21247 * 120.00206 * 2 1 4 4 C 1.47181 * 119.99461 * 179.97438 * 2 1 3 5 5 C 1.39873 * 120.14908 * 359.97438 * 4 2 1 6 6 C 1.37891 * 119.93864 * 180.02562 * 5 4 2 7 7 C 1.38339 * 120.23434 * 359.97438 * 6 5 4 8 8 C 1.38845 * 120.29345 * 0.02562 * 7 6 5 9 9 O 1.35919 * 119.97211 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99470 * 359.97438 * 9 8 7 11 11 C 1.50708 * 109.46570 * 179.97438 * 10 9 8 12 12 O 1.20824 * 120.00251 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99350 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99694 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47589 * 180.02562 * 14 13 11 16 16 O 1.21295 * 119.99705 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00507 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00118 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99996 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00180 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99742 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00033 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47299 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46927 * 120.00124 * 22 20 18 25 25 H 1.48506 * 109.46806 * 239.99838 * 22 20 18 26 26 C 1.38431 * 120.05993 * 359.97438 * 8 7 6 27 27 H 1.08998 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47426 * 300.00647 * 1 2 3 29 29 H 1.09001 * 109.46924 * 60.00321 * 1 2 3 30 30 H 1.08001 * 120.03042 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.88601 * 180.02562 * 6 5 4 32 32 H 1.07997 * 119.85413 * 180.02562 * 7 6 5 33 33 H 1.08992 * 109.47381 * 299.99874 * 10 9 8 34 34 H 1.08995 * 109.46844 * 60.00466 * 10 9 8 35 35 H 1.09007 * 109.47290 * 300.00413 * 14 13 11 36 36 H 1.09003 * 109.46991 * 59.99959 * 14 13 11 37 37 H 0.96998 * 119.99585 * 359.97438 * 17 15 14 38 38 H 0.96996 * 120.00135 * 180.02562 * 21 20 18 39 39 H 1.07997 * 120.11481 * 180.27741 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2747 0.0006 5 6 1.5465 -2.4878 0.0017 6 6 2.2402 -3.6795 0.0027 7 6 3.6236 -3.6802 0.0022 8 6 4.3246 -2.4817 0.0011 9 8 5.6837 -2.4900 0.0011 10 6 6.3246 -3.7672 0.0028 11 6 7.8198 -3.5789 0.0019 12 8 8.2885 -2.4653 0.0005 13 8 8.6309 -4.6485 0.0038 14 6 10.0600 -4.3920 0.0034 15 6 10.8055 -5.7016 0.0050 16 8 10.1926 -6.7483 0.0059 17 7 12.1533 -5.7100 0.0054 18 6 12.8314 -6.9014 0.0074 19 1 12.2857 -7.8334 0.0082 20 6 14.2209 -6.9100 0.0073 21 7 14.8849 -5.7760 0.0059 22 14 15.1449 -8.5335 0.0094 23 1 14.1730 -9.6562 0.0115 24 1 15.9980 -8.6189 -1.2031 25 1 15.9982 -8.6158 1.2220 26 6 3.6404 -1.2782 0.0000 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.4665 -2.4911 0.0025 31 1 1.7017 -4.6157 0.0031 32 1 4.1607 -4.6171 0.0026 33 1 6.0283 -4.3212 0.8935 34 1 6.0283 -4.3235 -0.8864 35 1 10.3269 -3.8235 -0.8876 36 1 10.3268 -3.8205 0.8924 37 1 12.6434 -4.8729 0.0043 38 1 15.8549 -5.7820 0.0054 39 1 4.1848 -0.3455 -0.0053 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731235130.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:58 Heat of formation + Delta-G solvation = -159.684433 kcal Electronic energy + Delta-G solvation = -24751.090499 eV Core-core repulsion = 20625.124102 eV Total energy + Delta-G solvation = -4125.966397 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.00338 -40.35287 -39.47520 -38.20874 -37.47870 -36.15391 -34.05409 -32.18693 -31.62704 -31.42217 -29.88494 -29.17114 -27.80559 -24.74697 -24.18808 -22.88103 -21.45735 -20.21247 -19.64806 -18.59410 -18.11757 -17.61982 -17.09518 -17.01632 -16.43472 -16.13405 -15.87696 -15.82765 -15.44294 -15.37170 -14.89087 -14.47532 -14.17825 -14.09132 -13.99190 -13.46215 -13.10066 -12.98096 -12.87505 -12.59243 -12.31908 -12.26510 -12.03131 -11.66176 -11.51984 -11.50596 -11.18452 -10.53971 -10.50874 -10.42173 -10.33205 -10.22514 -9.66038 -9.51873 -8.74198 -8.58960 -8.12945 -6.53958 -3.96296 0.16297 0.93547 1.87694 1.96194 2.09663 3.08929 3.14760 3.22047 3.29326 3.31316 3.67309 3.67946 4.05567 4.24064 4.38967 4.43399 4.50142 4.57657 4.67137 4.69072 4.80834 4.93571 4.96240 4.97853 5.10790 5.16860 5.41575 5.44989 5.45487 5.62033 5.74892 5.82527 5.87982 5.98122 6.13413 6.44457 6.84975 7.07172 7.44213 7.68165 7.90057 8.43274 9.02736 9.34352 9.83616 10.63166 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.044682 B = 0.001739 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.502428 B =16099.025080 C =16699.778709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.395 3.605 3 O -0.453 6.453 4 C -0.135 4.135 5 C -0.113 4.113 6 C -0.090 4.090 7 C -0.178 4.178 8 C 0.122 3.878 9 O -0.291 6.291 10 C 0.069 3.931 11 C 0.460 3.540 12 O -0.489 6.489 13 O -0.321 6.321 14 C 0.063 3.937 15 C 0.437 3.563 16 O -0.577 6.577 17 N -0.551 5.551 18 C -0.304 4.304 19 H 0.107 0.893 20 C 0.025 3.975 21 N -0.895 5.895 22 Si 0.934 3.066 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.089 4.089 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.408 7.138 -0.015 28.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.273 3.727 3 O -0.328 6.328 4 C -0.136 4.136 5 C -0.131 4.131 6 C -0.108 4.108 7 C -0.197 4.197 8 C 0.077 3.923 9 O -0.205 6.205 10 C -0.007 4.007 11 C 0.301 3.699 12 O -0.376 6.376 13 O -0.236 6.236 14 C -0.015 4.015 15 C 0.222 3.778 16 O -0.461 6.461 17 N -0.188 5.188 18 C -0.433 4.433 19 H 0.125 0.875 20 C -0.177 4.177 21 N -0.536 5.536 22 Si 0.761 3.239 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.108 4.108 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.229 0.771 38 H 0.084 0.916 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -26.961 7.511 -0.015 27.988 hybrid contribution 0.973 -0.438 -0.001 1.067 sum -25.988 7.072 -0.016 26.933 Atomic orbital electron populations 1.22237 0.93371 1.04992 1.05137 1.22504 0.91765 0.87387 0.71037 1.90572 1.72070 1.34293 1.35860 1.20307 0.93209 0.95235 1.04885 1.21427 1.00295 0.91265 1.00126 1.20956 0.93274 0.98480 0.98096 1.21635 0.95833 0.97380 1.04856 1.18854 0.81898 0.94109 0.97413 1.86118 1.16308 1.29321 1.88719 1.21904 0.87683 0.85265 1.05818 1.22792 0.89583 0.83468 0.74061 1.90719 1.77158 1.25806 1.43881 1.86481 1.19009 1.35011 1.83118 1.22832 0.75938 0.98834 1.03858 1.19262 0.83365 0.88947 0.86224 1.90563 1.67332 1.32782 1.55435 1.41704 1.03476 1.10008 1.63580 1.19783 0.88899 0.86323 1.48256 0.87498 1.25329 0.96618 0.98999 0.96787 1.69620 1.08705 1.25795 1.49459 0.85728 0.79193 0.81163 0.77834 1.19076 1.20591 1.20595 1.20672 0.92803 0.97162 1.00153 0.89604 0.88604 0.88600 0.84535 0.84705 0.84384 0.87201 0.87212 0.89239 0.89233 0.77103 0.91609 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.80 10.19 36.01 0.37 -0.43 16 2 C 0.40 3.27 7.23 -30.68 -0.22 3.05 16 3 O -0.45 -5.52 17.09 5.59 0.10 -5.43 16 4 C -0.14 -1.13 5.87 -105.08 -0.62 -1.75 16 5 C -0.11 -0.66 9.44 -39.10 -0.37 -1.03 16 6 C -0.09 -0.53 10.02 -39.67 -0.40 -0.93 16 7 C -0.18 -1.36 9.04 -39.32 -0.36 -1.71 16 8 C 0.12 1.26 6.68 -39.29 -0.26 1.00 16 9 O -0.29 -3.61 9.67 -39.44 -0.38 -3.99 16 10 C 0.07 0.74 5.33 36.01 0.19 0.93 16 11 C 0.46 7.00 8.03 36.01 0.29 7.29 16 12 O -0.49 -8.82 16.25 -25.48 -0.41 -9.23 16 13 O -0.32 -5.64 9.76 -45.90 -0.45 -6.09 16 14 C 0.06 1.16 5.94 36.00 0.21 1.37 16 15 C 0.44 10.29 7.86 -10.99 -0.09 10.21 16 16 O -0.58 -15.62 16.08 -14.11 -0.23 -15.85 16 17 N -0.55 -13.68 5.29 -10.96 -0.06 -13.74 16 18 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 19 H 0.11 3.03 7.16 -52.49 -0.38 2.66 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 21 N -0.90 -23.77 13.05 55.50 0.72 -23.04 16 22 Si 0.93 20.42 29.55 -169.99 -5.02 15.39 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 C -0.09 -0.94 9.54 -38.94 -0.37 -1.31 16 27 H 0.09 0.15 5.60 -51.93 -0.29 -0.14 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.14 0.37 5.92 -52.49 -0.31 0.05 16 31 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 32 H 0.14 0.79 6.27 -52.49 -0.33 0.46 16 33 H 0.11 0.89 7.66 -51.93 -0.40 0.49 16 34 H 0.11 0.89 7.65 -51.93 -0.40 0.49 16 35 H 0.09 1.51 8.13 -51.92 -0.42 1.08 16 36 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 37 H 0.40 9.32 7.90 -40.82 -0.32 9.00 16 38 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.14 1.67 7.65 -52.49 -0.40 1.26 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -35.36 353.13 -6.34 -41.70 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.07 Total: 6.10 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -1.86 Total: 8.85 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.67 Total: -36.78 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.37 Total: -40.59 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.36 -6.34 -41.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235130.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.981 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds