Wall clock time and date at job start Fri Apr 10 2020 14:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21247 * 120.00206 * 2 1 4 4 C 1.47181 * 119.99461 * 179.97438 * 2 1 3 5 5 C 1.39873 * 120.14908 * 359.97438 * 4 2 1 6 6 C 1.37891 * 119.93864 * 180.02562 * 5 4 2 7 7 C 1.38339 * 120.23434 * 359.97438 * 6 5 4 8 8 C 1.38845 * 120.29345 * 0.02562 * 7 6 5 9 9 O 1.35919 * 119.97211 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99470 * 359.97438 * 9 8 7 11 11 C 1.50708 * 109.46570 * 179.97438 * 10 9 8 12 12 O 1.20824 * 120.00251 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99350 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99694 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47589 * 180.02562 * 14 13 11 16 16 O 1.21295 * 119.99705 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00507 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00118 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99996 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00180 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99742 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00033 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47299 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46927 * 120.00124 * 22 20 18 25 25 H 1.48506 * 109.46806 * 239.99838 * 22 20 18 26 26 C 1.38431 * 120.05993 * 359.97438 * 8 7 6 27 27 H 1.08998 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47426 * 300.00647 * 1 2 3 29 29 H 1.09001 * 109.46924 * 60.00321 * 1 2 3 30 30 H 1.08001 * 120.03042 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.88601 * 180.02562 * 6 5 4 32 32 H 1.07997 * 119.85413 * 180.02562 * 7 6 5 33 33 H 1.08992 * 109.47381 * 299.99874 * 10 9 8 34 34 H 1.08995 * 109.46844 * 60.00466 * 10 9 8 35 35 H 1.09007 * 109.47290 * 300.00413 * 14 13 11 36 36 H 1.09003 * 109.46991 * 59.99959 * 14 13 11 37 37 H 0.96998 * 119.99585 * 359.97438 * 17 15 14 38 38 H 0.96996 * 120.00135 * 180.02562 * 21 20 18 39 39 H 1.07997 * 120.11481 * 180.27741 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2747 0.0006 5 6 1.5465 -2.4878 0.0017 6 6 2.2402 -3.6795 0.0027 7 6 3.6236 -3.6802 0.0022 8 6 4.3246 -2.4817 0.0011 9 8 5.6837 -2.4900 0.0011 10 6 6.3246 -3.7672 0.0028 11 6 7.8198 -3.5789 0.0019 12 8 8.2885 -2.4653 0.0005 13 8 8.6309 -4.6485 0.0038 14 6 10.0600 -4.3920 0.0034 15 6 10.8055 -5.7016 0.0050 16 8 10.1926 -6.7483 0.0059 17 7 12.1533 -5.7100 0.0054 18 6 12.8314 -6.9014 0.0074 19 1 12.2857 -7.8334 0.0082 20 6 14.2209 -6.9100 0.0073 21 7 14.8849 -5.7760 0.0059 22 14 15.1449 -8.5335 0.0094 23 1 14.1730 -9.6562 0.0115 24 1 15.9980 -8.6189 -1.2031 25 1 15.9982 -8.6158 1.2220 26 6 3.6404 -1.2782 0.0000 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.4665 -2.4911 0.0025 31 1 1.7017 -4.6157 0.0031 32 1 4.1607 -4.6171 0.0026 33 1 6.0283 -4.3212 0.8935 34 1 6.0283 -4.3235 -0.8864 35 1 10.3269 -3.8235 -0.8876 36 1 10.3268 -3.8205 0.8924 37 1 12.6434 -4.8729 0.0043 38 1 15.8549 -5.7820 0.0054 39 1 4.1848 -0.3455 -0.0053 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731235130.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:57 Heat of formation + Delta-G solvation = -182.887234 kcal Electronic energy + Delta-G solvation = -24752.096648 eV Core-core repulsion = 20625.124102 eV Total energy + Delta-G solvation = -4126.972546 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.98634 -41.31734 -40.34678 -39.95440 -38.25861 -37.50641 -36.05384 -33.44263 -32.76213 -32.28349 -30.87880 -29.87743 -29.05812 -26.57034 -24.90566 -23.47706 -22.59946 -21.47326 -20.91750 -20.09939 -19.42375 -18.67985 -18.22669 -18.14032 -17.45961 -17.15510 -16.90788 -16.87063 -16.55893 -16.23731 -16.04124 -15.84011 -15.62626 -15.44062 -14.72312 -14.66805 -14.15103 -14.13255 -13.59853 -13.56373 -13.55705 -13.31305 -13.02026 -12.95255 -12.66609 -12.47544 -12.22713 -12.14818 -12.10596 -11.97536 -11.69691 -11.59922 -10.85993 -10.54696 -10.13618 -10.11470 -9.38477 -8.53760 -6.04666 -0.44188 0.34583 0.80300 0.90005 1.34121 1.37002 1.43419 1.57896 1.84393 2.17362 2.35157 2.73569 2.94939 3.11856 3.12589 3.44628 3.71860 3.89093 3.93258 3.95211 4.00814 4.05439 4.11087 4.15102 4.18354 4.28539 4.46216 4.67537 4.75805 4.88115 5.06625 5.12902 5.21922 5.27208 5.36245 5.39034 5.61247 5.87122 6.15816 6.40798 6.49041 6.50986 7.01115 7.37577 7.90189 8.63380 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.044682 B = 0.001739 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.502428 B =16099.025080 C =16699.778709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.393 3.607 3 O -0.508 6.508 4 C -0.151 4.151 5 C -0.094 4.094 6 C -0.085 4.085 7 C -0.175 4.175 8 C 0.099 3.901 9 O -0.323 6.323 10 C 0.075 3.925 11 C 0.462 3.538 12 O -0.523 6.523 13 O -0.333 6.333 14 C 0.072 3.928 15 C 0.437 3.563 16 O -0.615 6.615 17 N -0.557 5.557 18 C -0.338 4.338 19 H 0.087 0.913 20 C -0.009 4.009 21 N -0.916 5.916 22 Si 1.000 3.000 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.270 1.270 26 C -0.121 4.121 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.178 0.822 31 H 0.173 0.827 32 H 0.161 0.839 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.400 0.600 38 H 0.281 0.719 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.850 5.355 -0.013 30.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.274 3.726 3 O -0.387 6.387 4 C -0.152 4.152 5 C -0.112 4.112 6 C -0.103 4.103 7 C -0.193 4.193 8 C 0.055 3.945 9 O -0.238 6.238 10 C -0.001 4.001 11 C 0.305 3.695 12 O -0.411 6.411 13 O -0.248 6.248 14 C -0.005 4.005 15 C 0.224 3.776 16 O -0.502 6.502 17 N -0.194 5.194 18 C -0.467 4.467 19 H 0.105 0.895 20 C -0.210 4.210 21 N -0.555 5.555 22 Si 0.823 3.177 23 H -0.194 1.194 24 H -0.195 1.195 25 H -0.195 1.195 26 C -0.140 4.140 27 H 0.135 0.865 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.195 0.805 31 H 0.191 0.809 32 H 0.178 0.822 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -29.423 5.741 -0.013 29.978 hybrid contribution 1.626 0.132 -0.002 1.632 sum -27.797 5.873 -0.015 28.411 Atomic orbital electron populations 1.22290 0.89434 1.07305 1.05930 1.23274 0.93855 0.86530 0.68905 1.90555 1.73494 1.35959 1.38710 1.20528 0.92367 0.96718 1.05560 1.21897 1.02222 0.89895 0.97188 1.21468 0.92641 1.00010 0.96160 1.21961 0.96901 0.96880 1.03565 1.18997 0.81064 0.95080 0.99391 1.86051 1.17832 1.30371 1.89547 1.22107 0.84027 0.85275 1.08643 1.23695 0.91091 0.82320 0.72418 1.90705 1.77947 1.26913 1.45577 1.86478 1.18432 1.36348 1.83526 1.22577 0.76666 0.95692 1.05581 1.20006 0.83022 0.90280 0.84287 1.90526 1.68044 1.34851 1.56793 1.41747 1.04162 1.09642 1.63894 1.19786 0.89775 0.86540 1.50619 0.89526 1.26151 0.96786 1.02458 0.95597 1.69680 1.09315 1.27414 1.49136 0.84772 0.77722 0.76870 0.78368 1.19386 1.19538 1.19547 1.20666 0.94215 0.96458 1.02665 0.86514 0.87673 0.87669 0.80482 0.80921 0.82194 0.84148 0.84159 0.87468 0.87460 0.76589 0.90971 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.04 10.19 71.24 0.73 -0.31 16 2 C 0.39 6.46 7.23 28.04 0.20 6.66 16 3 O -0.51 -13.41 17.09 -2.93 -0.05 -13.46 16 4 C -0.15 -2.43 5.87 -20.16 -0.12 -2.54 16 5 C -0.09 -0.75 9.44 22.58 0.21 -0.54 16 6 C -0.09 -0.64 10.02 22.21 0.22 -0.42 16 7 C -0.17 -2.18 9.04 22.44 0.20 -1.97 16 8 C 0.10 2.03 6.68 22.46 0.15 2.18 16 9 O -0.32 -8.14 9.67 -73.56 -0.71 -8.85 16 10 C 0.07 1.49 5.33 71.24 0.38 1.87 16 11 C 0.46 13.86 8.03 71.24 0.57 14.44 16 12 O -0.52 -19.13 16.25 28.40 0.46 -18.67 16 13 O -0.33 -11.50 9.76 -45.04 -0.44 -11.94 16 14 C 0.07 2.65 5.94 71.24 0.42 3.07 16 15 C 0.44 20.87 7.86 87.66 0.69 21.56 16 16 O -0.62 -33.92 16.08 15.72 0.25 -33.67 16 17 N -0.56 -28.19 5.29 -306.99 -1.62 -29.81 16 18 C -0.34 -18.73 9.68 84.04 0.81 -17.91 16 19 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 20 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 21 N -0.92 -48.33 13.05 21.66 0.28 -48.05 16 22 Si 1.00 41.51 29.55 68.60 2.03 43.54 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 26 C -0.12 -2.73 9.54 22.69 0.22 -2.51 16 27 H 0.12 -0.15 5.60 -2.39 -0.01 -0.16 16 28 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.18 -0.10 5.92 -2.91 -0.02 -0.11 16 31 H 0.17 0.07 8.06 -2.91 -0.02 0.05 16 32 H 0.16 1.20 6.27 -2.91 -0.02 1.18 16 33 H 0.14 1.92 7.66 -2.39 -0.02 1.90 16 34 H 0.14 1.92 7.65 -2.39 -0.02 1.90 16 35 H 0.11 3.57 8.13 -2.38 -0.02 3.55 16 36 H 0.11 3.58 8.13 -2.39 -0.02 3.56 16 37 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 38 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 39 H 0.11 3.09 7.65 -2.91 -0.02 3.07 16 Total: -1.00 -81.48 353.13 5.75 -75.73 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.39 Total: 21.64 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 5.16 Total: 23.54 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -1.34 Total: -77.87 kcal Atomic # 8 Polarization: -86.10 SS G_CDS: -0.49 Total: -86.59 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -81.48 5.75 -75.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235130.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.159 kcal (2) G-P(sol) polarization free energy of solvation -81.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds