Wall clock time and date at job start Fri Apr 10 2020 14:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47704 * 2 1 4 4 O 1.42903 * 109.47569 * 239.99695 * 2 1 3 5 5 C 1.35904 * 116.99914 * 85.13147 * 4 2 1 6 6 C 1.38900 * 119.97192 * 174.57182 * 5 4 2 7 7 C 1.38282 * 120.29385 * 180.02562 * 6 5 4 8 8 C 1.37934 * 120.24100 * 359.97172 * 7 6 5 9 9 C 1.39836 * 119.93384 * 0.02562 * 8 7 6 10 10 C 1.47180 * 120.14380 * 180.02562 * 9 8 7 11 11 O 1.21247 * 120.00279 * 0.02562 * 10 9 8 12 12 C 1.38383 * 119.97351 * 354.30102 * 5 4 2 13 13 C 1.50701 * 109.46905 * 119.99739 * 2 1 3 14 14 O 1.20826 * 119.99995 * 120.00616 * 13 2 1 15 15 O 1.34229 * 120.00259 * 299.99795 * 13 2 1 16 16 C 1.45195 * 117.00402 * 180.02562 * 15 13 2 17 17 C 1.50706 * 109.47377 * 180.02562 * 16 15 13 18 18 O 1.21294 * 119.99470 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00242 * 179.97438 * 17 16 15 20 20 C 1.37088 * 120.00296 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00003 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00560 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99309 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47218 * 90.00264 * 24 22 20 26 26 H 1.48504 * 109.47155 * 209.99929 * 24 22 20 27 27 H 1.48495 * 109.47416 * 329.99796 * 24 22 20 28 28 H 1.09003 * 109.46991 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46942 * 300.00381 * 1 2 3 30 30 H 1.09000 * 109.47013 * 60.00155 * 1 2 3 31 31 H 1.07997 * 119.85027 * 359.97438 * 6 5 4 32 32 H 1.08008 * 119.88077 * 180.02562 * 7 6 5 33 33 H 1.07998 * 120.03453 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.00064 * 180.02562 * 10 9 8 35 35 H 1.08001 * 120.11644 * 0.02562 * 12 5 4 36 36 H 1.09003 * 109.46965 * 300.00224 * 16 15 13 37 37 H 1.08996 * 109.47565 * 60.00105 * 16 15 13 38 38 H 0.97008 * 119.99702 * 359.97438 * 19 17 16 39 39 H 0.97004 * 119.99689 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1152 0.0632 -2.3035 6 6 2.6771 -0.4980 -3.4431 7 6 2.7915 0.2459 -4.6031 8 6 2.3479 1.5515 -4.6378 9 6 1.7806 2.1262 -3.4962 10 6 1.3052 3.5188 -3.5282 11 8 1.4046 4.1701 -4.5460 12 6 1.6611 1.3702 -2.3263 13 6 2.0322 -0.7104 1.2305 14 8 2.7270 -1.6927 1.1197 15 8 1.7080 -0.2517 2.4496 16 6 2.2275 -0.9855 3.5897 17 6 1.7625 -0.3290 4.8641 18 8 1.0624 0.6604 4.8160 19 7 2.1244 -0.8411 6.0570 20 6 1.7018 -0.2436 7.2162 21 1 1.0792 0.6378 7.1735 22 6 2.0754 -0.7713 8.4461 23 7 2.8343 -1.8429 8.4980 24 14 1.4990 0.0425 10.0256 25 1 0.2037 -0.5510 10.4441 26 1 2.5100 -0.1740 11.0915 27 1 1.3251 1.4994 9.7969 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.0268 -1.5196 -3.4228 32 1 3.2291 -0.1973 -5.4856 33 1 2.4393 2.1295 -5.5455 34 1 0.8678 3.9605 -2.6450 35 1 1.2204 1.8062 -1.4419 36 1 1.8641 -2.0126 3.5570 37 1 3.3170 -0.9845 3.5567 38 1 2.6840 -1.6326 6.0953 39 1 3.0948 -2.2115 9.3567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731243931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:44 Heat of formation + Delta-G solvation = -157.870378 kcal Electronic energy + Delta-G solvation = -25406.654102 eV Core-core repulsion = 21280.766368 eV Total energy + Delta-G solvation = -4125.887734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 4.94 seconds Orbital eigenvalues (eV) -41.17139 -40.28093 -39.33863 -38.22876 -37.50800 -36.17108 -34.06928 -32.83413 -31.70618 -31.42956 -30.21285 -28.49317 -25.41132 -25.37044 -24.53156 -23.10000 -21.48972 -20.76225 -19.67055 -18.68641 -18.14076 -17.74467 -17.20557 -16.72522 -16.58154 -16.16589 -15.74947 -15.70371 -15.39160 -15.06153 -14.68186 -14.60000 -14.25773 -14.09535 -14.02055 -13.59353 -13.27767 -12.89506 -12.69328 -12.39843 -12.32228 -12.12542 -11.98756 -11.66983 -11.65511 -11.43598 -11.17671 -10.55222 -10.48154 -10.45706 -10.33311 -10.22063 -9.66045 -9.52212 -8.72199 -8.59965 -8.14232 -6.55166 -3.97483 0.16715 0.91137 1.89570 2.02453 2.09103 3.09384 3.12832 3.20695 3.26743 3.34059 3.66693 3.73971 4.03229 4.23580 4.27748 4.41679 4.48638 4.52674 4.71359 4.83984 4.92585 4.97548 5.09169 5.09574 5.23248 5.33378 5.37105 5.44080 5.60157 5.68064 5.78574 5.82087 5.96650 5.97418 6.18600 6.42486 6.85366 6.96224 7.42822 7.66130 7.88510 8.41903 9.01403 9.32985 9.82209 10.61870 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.026306 B = 0.002089 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.157063 B =13398.705485 C =14143.799226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.096 3.904 3 H 0.114 0.886 4 O -0.287 6.287 5 C 0.121 3.879 6 C -0.113 4.113 7 C -0.094 4.094 8 C -0.097 4.097 9 C -0.154 4.154 10 C 0.383 3.617 11 O -0.457 6.457 12 C -0.163 4.163 13 C 0.462 3.538 14 O -0.489 6.489 15 O -0.319 6.319 16 C 0.061 3.939 17 C 0.437 3.563 18 O -0.577 6.577 19 N -0.551 5.551 20 C -0.303 4.303 21 H 0.107 0.893 22 C 0.025 3.975 23 N -0.896 5.896 24 Si 0.935 3.065 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.268 1.268 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.109 0.891 35 H 0.143 0.857 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.395 0.605 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 2.865 -22.467 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.038 3.962 3 H 0.131 0.869 4 O -0.200 6.200 5 C 0.076 3.924 6 C -0.131 4.131 7 C -0.112 4.112 8 C -0.115 4.115 9 C -0.155 4.155 10 C 0.241 3.759 11 O -0.330 6.330 12 C -0.182 4.182 13 C 0.302 3.698 14 O -0.376 6.376 15 O -0.234 6.234 16 C -0.016 4.016 17 C 0.222 3.778 18 O -0.461 6.461 19 N -0.188 5.188 20 C -0.432 4.432 21 H 0.124 0.876 22 C -0.178 4.178 23 N -0.536 5.536 24 Si 0.761 3.239 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.193 1.193 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.126 0.874 35 H 0.160 0.840 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.229 0.771 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.366 3.270 -22.822 23.096 hybrid contribution 0.246 -0.391 1.108 1.201 sum -1.120 2.880 -21.714 21.933 Atomic orbital electron populations 1.22369 0.91113 1.04974 1.04972 1.21656 0.96516 0.96550 0.81451 0.86861 1.86179 1.81330 1.36844 1.15663 1.18891 0.96396 0.90267 0.86833 1.20767 1.00116 1.01502 0.90738 1.20998 0.98874 0.93835 0.97489 1.21376 0.96899 0.95183 0.98080 1.20741 1.03060 0.97231 0.94436 1.24147 0.74402 0.85870 0.91447 1.90527 1.44295 1.62741 1.35421 1.21580 1.03568 0.93870 0.99196 1.22910 0.78369 0.83309 0.85180 1.90702 1.34579 1.25082 1.87235 1.86492 1.68795 1.54663 1.13410 1.22835 0.99725 0.95722 0.83293 1.19249 0.86993 0.87726 0.83821 1.90561 1.41456 1.27498 1.86564 1.41701 1.45577 1.27581 1.03906 1.19724 1.29924 1.11512 0.82083 0.87557 1.25332 0.96472 0.96226 0.99727 1.69614 1.35313 1.21401 1.27271 0.85784 0.78281 0.79615 0.80195 1.20223 1.20787 1.19252 0.90476 0.88395 0.90353 0.84344 0.84513 0.84764 0.87438 0.83975 0.89279 0.89308 0.77114 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.10 37.16 0.34 -1.21 16 2 C 0.10 1.03 2.75 -27.88 -0.08 0.96 16 3 H 0.11 0.95 6.31 -51.93 -0.33 0.63 16 4 O -0.29 -3.31 9.33 -39.39 -0.37 -3.68 16 5 C 0.12 1.15 6.60 -39.28 -0.26 0.89 16 6 C -0.11 -0.94 9.98 -39.32 -0.39 -1.33 16 7 C -0.09 -0.66 10.02 -39.68 -0.40 -1.05 16 8 C -0.10 -0.76 9.59 -39.10 -0.38 -1.13 16 9 C -0.15 -1.20 5.87 -105.08 -0.62 -1.82 16 10 C 0.38 2.79 11.46 34.36 0.39 3.18 16 11 O -0.46 -4.97 17.16 5.59 0.10 -4.87 16 12 C -0.16 -1.26 7.99 -38.94 -0.31 -1.57 16 13 C 0.46 6.89 7.33 36.01 0.26 7.16 16 14 O -0.49 -8.54 16.25 -25.48 -0.41 -8.96 16 15 O -0.32 -5.45 9.66 -45.90 -0.44 -5.89 16 16 C 0.06 1.11 5.94 36.01 0.21 1.32 16 17 C 0.44 10.10 7.86 -10.99 -0.09 10.01 16 18 O -0.58 -15.30 16.08 -14.11 -0.23 -15.53 16 19 N -0.55 -13.49 5.29 -10.96 -0.06 -13.55 16 20 C -0.30 -8.15 9.68 -14.94 -0.14 -8.29 16 21 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.03 0.65 5.50 -17.47 -0.10 0.55 16 23 N -0.90 -23.55 13.05 55.50 0.72 -22.82 16 24 Si 0.93 20.25 29.55 -169.99 -5.02 15.22 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.10 0.88 8.11 -51.93 -0.42 0.46 16 30 H 0.08 0.51 6.91 -51.93 -0.36 0.15 16 31 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 33 H 0.13 0.98 7.64 -52.49 -0.40 0.58 16 34 H 0.11 0.41 8.06 -52.48 -0.42 -0.02 16 35 H 0.14 0.79 5.42 -52.49 -0.28 0.51 16 36 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 37 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 38 H 0.40 9.19 7.90 -40.82 -0.32 8.86 16 39 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -34.07 353.70 -6.09 -40.16 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.16 Total: 6.91 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -1.55 Total: 7.67 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.67 Total: -36.37 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.36 Total: -38.93 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.07 -6.09 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.706 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.94 seconds