Wall clock time and date at job start Fri Apr 10 2020 14:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47704 * 2 1 4 4 O 1.42903 * 109.47569 * 239.99695 * 2 1 3 5 5 C 1.35904 * 116.99914 * 85.13147 * 4 2 1 6 6 C 1.38900 * 119.97192 * 174.57182 * 5 4 2 7 7 C 1.38282 * 120.29385 * 180.02562 * 6 5 4 8 8 C 1.37934 * 120.24100 * 359.97172 * 7 6 5 9 9 C 1.39836 * 119.93384 * 0.02562 * 8 7 6 10 10 C 1.47180 * 120.14380 * 180.02562 * 9 8 7 11 11 O 1.21247 * 120.00279 * 0.02562 * 10 9 8 12 12 C 1.38383 * 119.97351 * 354.30102 * 5 4 2 13 13 C 1.50701 * 109.46905 * 119.99739 * 2 1 3 14 14 O 1.20826 * 119.99995 * 120.00616 * 13 2 1 15 15 O 1.34229 * 120.00259 * 299.99795 * 13 2 1 16 16 C 1.45195 * 117.00402 * 180.02562 * 15 13 2 17 17 C 1.50706 * 109.47377 * 180.02562 * 16 15 13 18 18 O 1.21294 * 119.99470 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00242 * 179.97438 * 17 16 15 20 20 C 1.37088 * 120.00296 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00003 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00560 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99309 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47218 * 90.00264 * 24 22 20 26 26 H 1.48504 * 109.47155 * 209.99929 * 24 22 20 27 27 H 1.48495 * 109.47416 * 329.99796 * 24 22 20 28 28 H 1.09003 * 109.46991 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46942 * 300.00381 * 1 2 3 30 30 H 1.09000 * 109.47013 * 60.00155 * 1 2 3 31 31 H 1.07997 * 119.85027 * 359.97438 * 6 5 4 32 32 H 1.08008 * 119.88077 * 180.02562 * 7 6 5 33 33 H 1.07998 * 120.03453 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.00064 * 180.02562 * 10 9 8 35 35 H 1.08001 * 120.11644 * 0.02562 * 12 5 4 36 36 H 1.09003 * 109.46965 * 300.00224 * 16 15 13 37 37 H 1.08996 * 109.47565 * 60.00105 * 16 15 13 38 38 H 0.97008 * 119.99702 * 359.97438 * 19 17 16 39 39 H 0.97004 * 119.99689 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1152 0.0632 -2.3035 6 6 2.6771 -0.4980 -3.4431 7 6 2.7915 0.2459 -4.6031 8 6 2.3479 1.5515 -4.6378 9 6 1.7806 2.1262 -3.4962 10 6 1.3052 3.5188 -3.5282 11 8 1.4046 4.1701 -4.5460 12 6 1.6611 1.3702 -2.3263 13 6 2.0322 -0.7104 1.2305 14 8 2.7270 -1.6927 1.1197 15 8 1.7080 -0.2517 2.4496 16 6 2.2275 -0.9855 3.5897 17 6 1.7625 -0.3290 4.8641 18 8 1.0624 0.6604 4.8160 19 7 2.1244 -0.8411 6.0570 20 6 1.7018 -0.2436 7.2162 21 1 1.0792 0.6378 7.1735 22 6 2.0754 -0.7713 8.4461 23 7 2.8343 -1.8429 8.4980 24 14 1.4990 0.0425 10.0256 25 1 0.2037 -0.5510 10.4441 26 1 2.5100 -0.1740 11.0915 27 1 1.3251 1.4994 9.7969 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.0268 -1.5196 -3.4228 32 1 3.2291 -0.1973 -5.4856 33 1 2.4393 2.1295 -5.5455 34 1 0.8678 3.9605 -2.6450 35 1 1.2204 1.8062 -1.4419 36 1 1.8641 -2.0126 3.5570 37 1 3.3170 -0.9845 3.5567 38 1 2.6840 -1.6326 6.0953 39 1 3.0948 -2.2115 9.3567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731243931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:43 Heat of formation + Delta-G solvation = -179.091140 kcal Electronic energy + Delta-G solvation = -25407.574303 eV Core-core repulsion = 21280.766368 eV Total energy + Delta-G solvation = -4126.807935 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -42.12862 -41.24236 -40.20598 -39.87033 -38.27854 -37.48897 -36.03391 -33.63372 -33.38742 -32.32611 -30.86302 -30.02530 -26.83105 -25.97382 -25.84562 -23.87994 -22.18200 -21.73671 -21.44337 -20.08515 -19.42526 -18.83147 -18.26015 -17.88972 -17.56419 -17.20114 -17.02563 -16.57079 -16.50834 -16.10448 -15.90054 -15.70379 -15.57858 -15.26846 -14.94732 -14.66231 -14.24336 -14.13252 -13.81147 -13.55857 -13.47033 -13.33157 -12.96324 -12.93632 -12.68019 -12.46997 -12.34843 -12.16269 -12.11731 -11.93992 -11.57290 -11.56941 -10.82103 -10.52083 -10.11902 -10.09750 -9.37870 -8.52288 -6.02805 -0.41757 0.30433 0.84212 0.91908 1.36491 1.44202 1.46427 1.56906 1.86703 2.17207 2.34486 2.75329 2.94639 3.13467 3.22647 3.44335 3.59682 3.70675 3.78691 3.93245 4.00550 4.12893 4.14177 4.20578 4.25377 4.48822 4.53520 4.60657 4.71320 4.78212 5.07198 5.11191 5.17321 5.23325 5.37535 5.40142 5.59847 5.88704 6.16857 6.41741 6.42726 6.52438 7.02823 7.39709 7.92345 8.64599 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.026306 B = 0.002089 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.157063 B =13398.705485 C =14143.799226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 H 0.141 0.859 4 O -0.307 6.307 5 C 0.099 3.901 6 C -0.122 4.122 7 C -0.090 4.090 8 C -0.106 4.106 9 C -0.163 4.163 10 C 0.391 3.609 11 O -0.498 6.498 12 C -0.155 4.155 13 C 0.462 3.538 14 O -0.518 6.518 15 O -0.330 6.330 16 C 0.071 3.929 17 C 0.438 3.562 18 O -0.614 6.614 19 N -0.558 5.558 20 C -0.336 4.336 21 H 0.087 0.913 22 C -0.010 4.010 23 N -0.916 5.916 24 Si 0.998 3.002 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.270 1.270 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.142 0.858 32 H 0.161 0.839 33 H 0.136 0.864 34 H 0.151 0.849 35 H 0.165 0.835 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.400 0.600 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.562 3.358 -22.863 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.043 3.957 3 H 0.158 0.842 4 O -0.221 6.221 5 C 0.055 3.945 6 C -0.141 4.141 7 C -0.108 4.108 8 C -0.124 4.124 9 C -0.165 4.165 10 C 0.252 3.748 11 O -0.373 6.373 12 C -0.174 4.174 13 C 0.305 3.695 14 O -0.406 6.406 15 O -0.245 6.245 16 C -0.006 4.006 17 C 0.225 3.775 18 O -0.501 6.501 19 N -0.196 5.196 20 C -0.465 4.465 21 H 0.104 0.896 22 C -0.211 4.211 23 N -0.556 5.556 24 Si 0.821 3.179 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.194 1.194 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.160 0.840 32 H 0.178 0.822 33 H 0.154 0.846 34 H 0.167 0.833 35 H 0.183 0.817 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.234 0.766 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.634 3.739 -23.231 23.587 hybrid contribution 0.363 -0.577 1.122 1.313 sum -1.271 3.162 -22.109 22.370 Atomic orbital electron populations 1.22376 0.89437 1.04870 1.06210 1.21806 0.97534 0.96847 0.79538 0.84173 1.86145 1.81939 1.37805 1.16222 1.19108 0.97844 0.91115 0.86430 1.20978 1.00122 1.01973 0.90990 1.21236 0.98235 0.93458 0.97856 1.21592 0.96845 0.95603 0.98404 1.20943 1.03206 0.97811 0.94493 1.24717 0.72989 0.85224 0.91862 1.90526 1.46163 1.63486 1.37164 1.21730 1.02740 0.93035 0.99851 1.23777 0.77447 0.83013 0.85291 1.90686 1.36020 1.26535 1.87391 1.86493 1.69120 1.54883 1.13990 1.22584 1.00639 0.95770 0.81631 1.20004 0.85593 0.86962 0.84945 1.90528 1.42933 1.29199 1.87416 1.41747 1.45900 1.27807 1.04106 1.19723 1.31236 1.11923 0.83647 0.89553 1.26137 0.96113 0.96573 1.02251 1.69675 1.35519 1.22006 1.28355 0.84850 0.78194 0.78452 0.76403 1.19483 1.19624 1.19408 0.91330 0.88601 0.87563 0.84004 0.82191 0.84643 0.83264 0.81731 0.87460 0.87457 0.76589 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.10 71.98 0.66 -1.99 16 2 C 0.10 1.97 2.75 29.85 0.08 2.05 16 3 H 0.14 1.97 6.31 -2.39 -0.02 1.95 16 4 O -0.31 -6.68 9.33 -73.39 -0.68 -7.36 16 5 C 0.10 1.72 6.60 22.46 0.15 1.87 16 6 C -0.12 -1.89 9.98 22.44 0.22 -1.66 16 7 C -0.09 -1.12 10.02 22.21 0.22 -0.90 16 8 C -0.11 -1.50 9.59 22.58 0.22 -1.29 16 9 C -0.16 -2.22 5.87 -20.16 -0.12 -2.34 16 10 C 0.39 4.82 11.46 70.17 0.80 5.63 16 11 O -0.50 -10.27 17.16 -2.93 -0.05 -10.32 16 12 C -0.16 -2.00 7.99 22.68 0.18 -1.82 16 13 C 0.46 13.32 7.33 71.24 0.52 13.84 16 14 O -0.52 -17.76 16.25 28.40 0.46 -17.30 16 15 O -0.33 -10.98 9.66 -45.06 -0.44 -11.41 16 16 C 0.07 2.51 5.94 71.24 0.42 2.93 16 17 C 0.44 20.37 7.86 87.66 0.69 21.06 16 18 O -0.61 -33.05 16.08 15.73 0.25 -32.79 16 19 N -0.56 -27.68 5.29 -306.99 -1.62 -29.30 16 20 C -0.34 -18.33 9.68 84.04 0.81 -17.52 16 21 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 22 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 23 N -0.92 -47.76 13.05 21.66 0.28 -47.47 16 24 Si 1.00 41.06 29.55 68.60 2.03 43.09 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 26 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.10 1.55 8.11 -2.39 -0.02 1.53 16 30 H 0.11 1.04 6.91 -2.39 -0.02 1.02 16 31 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.14 1.86 7.64 -2.91 -0.02 1.84 16 34 H 0.15 0.57 8.06 -2.91 -0.02 0.55 16 35 H 0.17 1.24 5.42 -2.91 -0.02 1.22 16 36 H 0.11 3.42 8.13 -2.39 -0.02 3.40 16 37 H 0.11 3.42 8.13 -2.39 -0.02 3.40 16 38 H 0.40 18.74 7.90 -92.70 -0.73 18.01 16 39 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -74.31 353.70 5.94 -68.37 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.38 Total: 24.68 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 5.33 Total: 19.83 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -1.34 Total: -76.78 kcal Atomic # 8 Polarization: -78.73 SS G_CDS: -0.46 Total: -79.19 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -74.31 5.94 -68.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.726 kcal (2) G-P(sol) polarization free energy of solvation -74.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds