Wall clock time and date at job start Fri Apr 10 2020 14:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45201 * 109.47172 * 2 1 4 4 C 1.34688 * 116.99567 * 179.97438 * 3 2 1 5 5 O 1.21443 * 120.00153 * 0.02562 * 4 3 2 6 6 C 1.47944 * 119.99757 * 180.02562 * 4 3 2 7 7 C 1.39598 * 119.99602 * 0.27353 * 6 4 3 8 8 C 1.37813 * 119.99659 * 180.25563 * 7 6 4 9 9 C 1.39606 * 119.99886 * 359.48912 * 8 7 6 10 10 C 1.47936 * 119.99902 * 180.25120 * 9 8 7 11 11 O 1.21443 * 120.00297 * 0.02562 * 10 9 8 12 12 O 1.34696 * 119.99770 * 180.02562 * 10 9 8 13 13 C 1.45201 * 116.99770 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46858 * 180.02562 * 13 12 10 15 15 O 1.21285 * 120.00096 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99569 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99587 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00093 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99729 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00503 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99745 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47122 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47032 * 120.00572 * 21 19 17 24 24 H 1.48498 * 109.47095 * 240.00027 * 21 19 17 25 25 C 1.39595 * 119.99679 * 0.24069 * 9 8 7 26 26 C 1.37809 * 120.00607 * 0.02562 * 25 9 8 27 27 H 1.09004 * 109.47175 * 300.00073 * 1 2 3 28 28 H 1.09009 * 109.47126 * 59.99374 * 1 2 3 29 29 H 1.08999 * 109.47624 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46936 * 240.00307 * 2 1 3 31 31 H 1.08995 * 109.47037 * 120.00532 * 2 1 3 32 32 H 1.07995 * 120.00866 * 359.97438 * 7 6 4 33 33 H 1.08002 * 120.00410 * 179.77510 * 8 7 6 34 34 H 1.09004 * 109.47029 * 300.00063 * 13 12 10 35 35 H 1.09003 * 109.47073 * 59.99782 * 13 12 10 36 36 H 0.96999 * 120.00226 * 0.02562 * 16 14 13 37 37 H 0.96994 * 120.00364 * 179.97438 * 20 19 17 38 38 H 1.08005 * 119.99712 * 180.02562 * 25 9 8 39 39 H 1.08001 * 120.00584 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3493 1.5453 0.0005 5 8 4.0890 0.5822 0.0005 6 6 3.9148 2.9124 0.0011 7 6 3.0644 4.0195 0.0069 8 6 3.5912 5.2929 0.0022 9 6 4.9752 5.4758 0.0023 10 6 5.5407 6.8429 0.0029 11 8 4.8010 7.8060 0.0036 12 8 6.8760 7.0193 0.0025 13 6 7.3601 8.3882 0.0036 14 6 8.8671 8.3882 0.0024 15 8 9.4734 7.3378 0.0012 16 7 9.5409 9.5554 0.0026 17 6 10.9119 9.5553 0.0020 18 1 11.4519 8.6200 0.0018 19 6 11.6067 10.7586 0.0017 20 7 10.9497 11.8967 0.0025 21 14 13.4747 10.7585 0.0002 22 1 13.9696 9.3585 -0.0011 23 1 13.9688 11.4589 -1.2125 24 1 13.9707 11.4583 1.2124 25 6 5.8255 4.3687 0.0023 26 6 5.2988 3.0952 0.0015 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.9938 3.8781 0.0105 33 1 2.9334 6.1495 0.0030 34 1 6.9963 8.9029 -0.8858 35 1 6.9970 8.9012 0.8942 36 1 9.0559 10.3954 0.0039 37 1 11.4347 12.7367 0.0026 38 1 6.8962 4.5102 0.0028 39 1 5.9566 2.2387 0.0018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811275452.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:08 Heat of formation + Delta-G solvation = -181.595303 kcal Electronic energy + Delta-G solvation = -24932.144212 eV Core-core repulsion = 20805.227688 eV Total energy + Delta-G solvation = -4126.916524 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.04427 -40.46096 -38.90965 -38.07050 -36.95719 -36.17372 -34.03179 -32.67109 -31.69672 -31.42074 -31.37390 -28.53483 -26.01128 -24.58798 -23.62869 -22.91140 -22.00583 -20.76356 -19.62900 -18.50398 -18.19982 -18.09106 -17.19342 -16.97493 -16.70093 -16.39733 -15.71942 -15.20332 -14.88115 -14.67686 -14.64430 -14.23314 -14.16283 -13.95168 -13.86108 -13.31645 -13.16041 -13.03532 -12.69123 -12.42919 -12.25844 -12.10341 -12.06782 -11.64306 -11.46682 -11.16953 -10.98440 -10.96646 -10.62082 -10.49912 -10.40544 -10.31985 -9.64045 -9.51944 -9.42145 -8.56162 -8.10798 -6.52203 -3.94332 -0.08545 0.96610 1.81995 2.15474 2.53121 2.59003 3.10425 3.23001 3.30335 3.46131 3.70705 4.06612 4.14930 4.43542 4.46560 4.48684 4.50534 4.55279 4.79847 4.87306 4.88435 5.02370 5.12662 5.20361 5.30060 5.32723 5.45072 5.49451 5.64575 5.64743 5.73499 5.83835 5.96613 5.99922 6.04326 6.34262 6.47161 7.31321 7.46085 7.69858 7.92321 8.45530 9.04856 9.36607 9.86035 10.64977 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.036466 B = 0.001903 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.663336 B =14706.987748 C =15448.901948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.510 3.490 5 O -0.500 6.500 6 C -0.100 4.100 7 C -0.076 4.076 8 C -0.070 4.070 9 C -0.082 4.082 10 C 0.501 3.499 11 O -0.504 6.504 12 O -0.319 6.319 13 C 0.061 3.939 14 C 0.438 3.562 15 O -0.576 6.576 16 N -0.552 5.552 17 C -0.303 4.303 18 H 0.107 0.893 19 C 0.025 3.975 20 N -0.896 5.896 21 Si 0.934 3.066 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.069 4.069 26 C -0.067 4.067 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.395 0.605 37 H 0.274 0.726 38 H 0.158 0.842 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.844 -17.097 0.011 26.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.270 6.270 4 C 0.354 3.646 5 O -0.389 6.389 6 C -0.101 4.101 7 C -0.094 4.094 8 C -0.089 4.089 9 C -0.083 4.083 10 C 0.345 3.655 11 O -0.393 6.393 12 O -0.233 6.233 13 C -0.016 4.016 14 C 0.223 3.777 15 O -0.460 6.460 16 N -0.189 5.189 17 C -0.432 4.432 18 H 0.125 0.875 19 C -0.177 4.177 20 N -0.537 5.537 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.087 4.087 26 C -0.085 4.085 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.229 0.771 37 H 0.083 0.917 38 H 0.175 0.825 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.349 -17.619 0.010 26.917 hybrid contribution 0.560 0.698 -0.001 0.895 sum -19.789 -16.921 0.009 26.037 Atomic orbital electron populations 1.21823 0.92340 1.03164 1.03707 1.23090 0.95504 0.79646 1.02887 1.86533 1.23575 1.32792 1.84095 1.21199 0.80742 0.89776 0.72863 1.90850 1.60412 1.42323 1.45281 1.19351 0.94219 0.90115 1.06389 1.21376 1.00617 0.90778 0.96643 1.21285 0.93424 0.98013 0.96130 1.19463 0.94052 0.90718 1.04081 1.21205 0.81461 0.89526 0.73311 1.90827 1.60727 1.42130 1.45663 1.86580 1.21978 1.31925 1.82786 1.22817 0.95501 0.79561 1.03739 1.19277 0.86854 0.85499 0.86109 1.90561 1.69090 1.31034 1.55308 1.41706 1.07328 1.06142 1.63710 1.19784 0.80529 0.94712 1.48146 0.87512 1.25317 1.01023 0.94552 0.96838 1.69617 1.36761 0.97673 1.49624 0.85738 0.81717 0.78720 0.77811 1.19077 1.20617 1.20613 1.21664 1.01781 0.90585 0.94631 1.21309 0.93205 0.98199 0.95779 0.91323 0.91327 0.90057 0.90974 0.90973 0.83496 0.83409 0.89298 0.89291 0.77137 0.91651 0.82469 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 10.29 37.16 0.38 -0.23 16 2 C 0.06 0.41 6.19 37.16 0.23 0.64 16 3 O -0.35 -3.08 9.46 -40.46 -0.38 -3.46 16 4 C 0.51 5.35 7.90 34.71 0.27 5.63 16 5 O -0.50 -6.40 16.12 -19.22 -0.31 -6.71 16 6 C -0.10 -0.99 5.88 -104.91 -0.62 -1.61 16 7 C -0.08 -0.66 9.60 -39.23 -0.38 -1.04 16 8 C -0.07 -0.71 9.58 -39.23 -0.38 -1.08 16 9 C -0.08 -1.02 5.88 -104.91 -0.62 -1.63 16 10 C 0.50 7.77 7.90 34.70 0.27 8.04 16 11 O -0.50 -8.46 16.12 -19.22 -0.31 -8.77 16 12 O -0.32 -5.71 8.99 -47.16 -0.42 -6.13 16 13 C 0.06 1.13 5.95 36.01 0.21 1.34 16 14 C 0.44 10.31 7.86 -10.99 -0.09 10.23 16 15 O -0.58 -15.62 16.08 -14.11 -0.23 -15.85 16 16 N -0.55 -13.70 5.29 -10.97 -0.06 -13.76 16 17 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 18 H 0.11 3.04 7.16 -52.49 -0.38 2.67 16 19 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 20 N -0.90 -23.78 13.05 55.50 0.72 -23.05 16 21 Si 0.93 20.51 29.55 -169.99 -5.02 15.48 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 C -0.07 -0.79 9.60 -39.23 -0.38 -1.17 16 26 C -0.07 -0.69 9.58 -39.23 -0.38 -1.07 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.15 0.93 7.60 -52.49 -0.40 0.54 16 33 H 0.15 1.34 7.64 -52.49 -0.40 0.94 16 34 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 37 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 38 H 0.16 1.89 7.60 -52.48 -0.40 1.49 16 39 H 0.15 1.41 7.64 -52.49 -0.40 1.01 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -32.96 358.20 -6.69 -39.65 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.39 Total: 6.99 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -1.69 Total: 10.21 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.67 Total: -36.81 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -1.65 Total: -40.93 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.96 -6.69 -39.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811275452.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.942 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds