Wall clock time and date at job start Fri Apr 10 2020 14:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35955 * 117.00075 * 2 1 4 4 C 1.38065 * 119.99886 * 359.97438 * 3 2 1 5 5 C 1.40003 * 119.83640 * 179.97438 * 4 3 2 6 6 C 1.46914 * 120.07885 * 180.02562 * 5 4 3 7 7 C 1.35150 * 119.99958 * 226.70703 * 6 5 4 8 8 C 1.41775 * 119.99800 * 11.03670 * 7 6 5 9 9 O 1.21652 * 120.00178 * 7.10971 * 8 7 6 10 10 O 1.34938 * 119.99704 * 187.10960 * 8 7 6 11 11 C 1.42896 * 117.00091 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47248 * 179.97438 * 11 10 8 13 13 N 1.34777 * 119.99941 * 180.02562 * 12 11 10 14 14 O 1.21275 * 119.99848 * 0.02562 * 12 11 10 15 15 C 1.40053 * 119.83821 * 0.02974 * 5 4 3 16 16 C 1.37636 * 119.99955 * 359.97438 * 15 5 4 17 17 C 1.39072 * 120.16394 * 359.97438 * 16 15 5 18 18 O 1.35604 * 119.91670 * 180.02562 * 17 16 15 19 19 C 1.34751 * 117.00190 * 354.16166 * 18 17 16 20 20 H 1.08001 * 120.00126 * 5.07374 * 19 18 17 21 21 C 1.38715 * 120.00104 * 185.07088 * 19 18 17 22 22 N 1.31524 * 119.99858 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00354 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47141 * 59.99954 * 23 21 19 25 25 H 1.48503 * 109.47329 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47261 * 300.00426 * 23 21 19 27 27 H 1.08996 * 109.47262 * 59.99049 * 1 2 3 28 28 H 1.08996 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46892 * 299.99317 * 1 2 3 30 30 H 1.07999 * 120.08229 * 0.02562 * 4 3 2 31 31 H 1.07999 * 120.00332 * 46.71073 * 6 5 4 32 32 H 1.07998 * 119.99421 * 191.03805 * 7 6 5 33 33 H 1.08997 * 109.47305 * 300.00240 * 11 10 8 34 34 H 1.09004 * 109.46895 * 59.99987 * 11 10 8 35 35 H 0.96998 * 119.99722 * 359.97438 * 13 12 11 36 36 H 0.97005 * 119.99970 * 180.02562 * 13 12 11 37 37 H 1.08006 * 120.00030 * 180.27745 * 15 5 4 38 38 H 1.08003 * 119.91525 * 180.02562 * 16 15 5 39 39 H 0.96994 * 120.00108 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2943 2.3693 -0.0005 5 6 1.9334 3.6149 0.0000 6 6 1.1385 4.8504 0.0000 7 6 1.4481 5.8532 -0.8515 8 6 2.3791 5.6325 -1.8978 9 8 2.8010 4.5115 -2.1102 10 8 2.7971 6.6661 -2.6580 11 6 3.7361 6.3714 -3.6940 12 6 4.0840 7.6383 -4.4320 13 7 4.9574 7.6025 -5.4578 14 8 3.5779 8.6902 -4.1029 15 6 3.3324 3.6803 0.0005 16 6 4.0755 2.5217 0.0009 17 6 3.4406 1.2843 0.0014 18 8 4.1776 0.1461 0.0024 19 6 5.5127 0.2816 -0.1193 20 1 5.9569 1.2660 -0.1295 21 6 6.3167 -0.8432 -0.2316 22 7 5.7758 -2.0420 -0.2197 23 14 8.1676 -0.6555 -0.3996 24 1 8.7036 0.0511 0.7914 25 1 8.7940 -1.9980 -0.5029 26 1 8.4766 0.1297 -1.6216 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2157 2.3143 -0.0005 31 1 0.3067 4.9574 0.6805 32 1 0.9864 6.8224 -0.7349 33 1 4.6390 5.9461 -3.2558 34 1 3.2975 5.6552 -4.3889 35 1 5.3624 6.7612 -5.7207 36 1 5.1816 8.4181 -5.9327 37 1 3.8282 4.6398 0.0054 38 1 5.1542 2.5737 0.0017 39 1 6.3378 -2.8286 -0.2986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006497893.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:37 Heat of formation + Delta-G solvation = -120.970394 kcal Electronic energy + Delta-G solvation = -26421.127731 eV Core-core repulsion = 22296.840101 eV Total energy + Delta-G solvation = -4124.287631 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71312 -39.66431 -39.23616 -37.54367 -37.03792 -35.64067 -34.01125 -33.19158 -32.24007 -29.61526 -29.32187 -28.32760 -26.52930 -25.46622 -24.01868 -21.64225 -21.51447 -20.97581 -19.49106 -18.15508 -18.04105 -17.97748 -17.08388 -16.76698 -16.61129 -16.15386 -15.62039 -15.15920 -15.10928 -14.84689 -14.56821 -14.19321 -13.89589 -13.71320 -13.49078 -13.40236 -13.14009 -12.87039 -12.45270 -12.29287 -11.75538 -11.57598 -11.43427 -11.15153 -10.98811 -10.80890 -10.64664 -10.58179 -10.40800 -10.24559 -10.04643 -9.89155 -9.47501 -9.30352 -8.77867 -7.85789 -6.76824 -6.50611 -4.02951 0.89184 2.19781 2.29261 2.46592 2.49403 3.09736 3.11143 3.13956 3.29187 3.58562 3.91278 4.04427 4.51458 4.52658 4.94209 4.97395 4.99384 5.08604 5.12727 5.17538 5.49752 5.52824 5.57865 5.66541 5.71550 5.86421 6.05964 6.18852 6.29418 6.37195 6.44252 6.57979 6.62242 6.92271 6.93055 7.04445 7.19552 7.32985 7.60366 7.90503 7.90709 8.05727 8.19671 8.93008 9.64394 10.65964 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.010055 B = 0.003902 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.042175 B = 7174.871783 C = 9386.393937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.304 6.304 3 C 0.042 3.958 4 C -0.132 4.132 5 C -0.168 4.168 6 C 0.050 3.950 7 C -0.248 4.248 8 C 0.491 3.509 9 O -0.481 6.481 10 O -0.339 6.339 11 C 0.047 3.953 12 C 0.521 3.479 13 N -0.852 5.852 14 O -0.524 6.524 15 C -0.019 4.019 16 C -0.221 4.221 17 C 0.153 3.847 18 O -0.154 6.154 19 C -0.390 4.390 20 H 0.094 0.906 21 C 0.041 3.959 22 N -0.851 5.851 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.405 0.595 36 H 0.407 0.593 37 H 0.100 0.900 38 H 0.133 0.867 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.312 13.484 -5.168 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.219 6.219 3 C -0.002 4.002 4 C -0.151 4.151 5 C -0.169 4.169 6 C 0.031 3.969 7 C -0.267 4.267 8 C 0.338 3.662 9 O -0.369 6.369 10 O -0.256 6.256 11 C -0.031 4.031 12 C 0.305 3.695 13 N -0.418 5.418 14 O -0.398 6.398 15 C -0.037 4.037 16 C -0.240 4.240 17 C 0.097 3.903 18 O -0.055 6.055 19 C -0.466 4.466 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.484 5.484 23 Si 0.767 3.233 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.137 0.863 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.234 0.766 36 H 0.238 0.762 37 H 0.118 0.882 38 H 0.151 0.849 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.478 13.011 -4.882 14.937 hybrid contribution 1.093 0.189 -0.650 1.286 sum -4.384 13.200 -5.532 14.968 Atomic orbital electron populations 1.22868 0.80529 1.02843 1.00159 1.86229 1.19266 1.26371 1.89993 1.17925 0.89337 0.84403 1.08562 1.20646 0.98101 0.90769 1.05611 1.18060 0.92892 0.91332 1.14618 1.22504 0.92758 0.90561 0.91041 1.21073 1.05110 1.01909 0.98616 1.20271 0.80868 0.82561 0.82524 1.91102 1.54321 1.23082 1.68409 1.86262 1.56706 1.39572 1.43067 1.22143 0.94785 0.95386 0.90774 1.20204 0.78780 0.90301 0.80225 1.43674 1.47605 1.14722 1.35816 1.90783 1.51616 1.31945 1.65497 1.20520 0.91907 0.96665 0.94640 1.20722 1.00359 0.90799 1.12136 1.18811 0.88257 0.87543 0.95692 1.83984 1.19562 1.25759 1.76245 1.21403 0.78613 0.94849 1.51718 0.88867 1.25351 1.00605 0.94183 0.96368 1.70041 1.36485 0.97705 1.44167 0.85761 0.80231 0.78055 0.79290 1.19355 1.20167 1.19411 0.93681 0.89159 0.93650 0.86299 0.84901 0.84590 0.88253 0.88418 0.76642 0.76179 0.88202 0.84948 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.81 101.05 0.99 1.47 16 2 O -0.30 -6.71 10.28 -34.21 -0.35 -7.06 16 3 C 0.04 0.95 6.70 -39.13 -0.26 0.69 16 4 C -0.13 -2.43 8.78 -38.98 -0.34 -2.77 16 5 C -0.17 -2.94 4.36 -105.04 -0.46 -3.40 16 6 C 0.05 0.66 9.78 -37.17 -0.36 0.30 16 7 C -0.25 -3.25 9.86 -39.33 -0.39 -3.64 16 8 C 0.49 7.58 6.86 32.08 0.22 7.80 16 9 O -0.48 -8.80 12.00 -19.38 -0.23 -9.03 16 10 O -0.34 -4.95 9.64 -47.91 -0.46 -5.41 16 11 C 0.05 0.55 5.85 36.00 0.21 0.76 16 12 C 0.52 5.85 8.18 -10.99 -0.09 5.76 16 13 N -0.85 -5.52 8.87 31.22 0.28 -5.24 16 14 O -0.52 -8.22 17.34 -14.35 -0.25 -8.47 16 15 C -0.02 -0.36 6.72 -39.12 -0.26 -0.62 16 16 C -0.22 -4.90 9.14 -39.49 -0.36 -5.26 16 17 C 0.15 3.82 6.67 -38.75 -0.26 3.56 16 18 O -0.15 -4.48 9.52 -13.89 -0.13 -4.61 16 19 C -0.39 -10.88 9.48 30.91 0.29 -10.59 16 20 H 0.09 2.38 5.19 -52.49 -0.27 2.11 16 21 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 22 N -0.85 -24.87 13.67 55.48 0.76 -24.11 16 23 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 H 0.04 0.61 7.66 -51.93 -0.40 0.22 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.04 0.59 7.66 -51.93 -0.40 0.19 16 30 H 0.12 1.78 6.28 -52.49 -0.33 1.45 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.10 1.05 8.13 -51.93 -0.42 0.63 16 34 H 0.10 1.00 8.13 -51.93 -0.42 0.58 16 35 H 0.40 1.50 8.83 -40.82 -0.36 1.14 16 36 H 0.41 2.12 8.93 -40.82 -0.36 1.76 16 37 H 0.10 1.74 7.32 -52.48 -0.38 1.36 16 38 H 0.13 2.90 5.62 -52.48 -0.29 2.60 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 346.17 15.07 5.22 5.22 Total: -1.00 -37.21 346.17 -5.41 -42.62 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.05 Total: 5.90 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.17 Total: -4.93 kcal Atomic # 7 Polarization: -30.38 SS G_CDS: 1.04 Total: -29.35 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -1.43 Total: -34.59 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.21 -5.41 -42.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006497893.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.353 kcal (2) G-P(sol) polarization free energy of solvation -37.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds