Wall clock time and date at job start Fri Apr 10 2020 14:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35955 * 117.00075 * 2 1 4 4 C 1.38065 * 119.99886 * 359.97438 * 3 2 1 5 5 C 1.40003 * 119.83640 * 179.97438 * 4 3 2 6 6 C 1.46914 * 120.07885 * 180.02562 * 5 4 3 7 7 C 1.35150 * 119.99958 * 226.70703 * 6 5 4 8 8 C 1.41775 * 119.99800 * 11.03670 * 7 6 5 9 9 O 1.21652 * 120.00178 * 7.10971 * 8 7 6 10 10 O 1.34938 * 119.99704 * 187.10960 * 8 7 6 11 11 C 1.42896 * 117.00091 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47248 * 179.97438 * 11 10 8 13 13 N 1.34777 * 119.99941 * 180.02562 * 12 11 10 14 14 O 1.21275 * 119.99848 * 0.02562 * 12 11 10 15 15 C 1.40053 * 119.83821 * 0.02974 * 5 4 3 16 16 C 1.37636 * 119.99955 * 359.97438 * 15 5 4 17 17 C 1.39072 * 120.16394 * 359.97438 * 16 15 5 18 18 O 1.35604 * 119.91670 * 180.02562 * 17 16 15 19 19 C 1.34751 * 117.00190 * 354.16166 * 18 17 16 20 20 H 1.08001 * 120.00126 * 5.07374 * 19 18 17 21 21 C 1.38715 * 120.00104 * 185.07088 * 19 18 17 22 22 N 1.31524 * 119.99858 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00354 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47141 * 59.99954 * 23 21 19 25 25 H 1.48503 * 109.47329 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47261 * 300.00426 * 23 21 19 27 27 H 1.08996 * 109.47262 * 59.99049 * 1 2 3 28 28 H 1.08996 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46892 * 299.99317 * 1 2 3 30 30 H 1.07999 * 120.08229 * 0.02562 * 4 3 2 31 31 H 1.07999 * 120.00332 * 46.71073 * 6 5 4 32 32 H 1.07998 * 119.99421 * 191.03805 * 7 6 5 33 33 H 1.08997 * 109.47305 * 300.00240 * 11 10 8 34 34 H 1.09004 * 109.46895 * 59.99987 * 11 10 8 35 35 H 0.96998 * 119.99722 * 359.97438 * 13 12 11 36 36 H 0.97005 * 119.99970 * 180.02562 * 13 12 11 37 37 H 1.08006 * 120.00030 * 180.27745 * 15 5 4 38 38 H 1.08003 * 119.91525 * 180.02562 * 16 15 5 39 39 H 0.96994 * 120.00108 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2943 2.3693 -0.0005 5 6 1.9334 3.6149 0.0000 6 6 1.1385 4.8504 0.0000 7 6 1.4481 5.8532 -0.8515 8 6 2.3791 5.6325 -1.8978 9 8 2.8010 4.5115 -2.1102 10 8 2.7971 6.6661 -2.6580 11 6 3.7361 6.3714 -3.6940 12 6 4.0840 7.6383 -4.4320 13 7 4.9574 7.6025 -5.4578 14 8 3.5779 8.6902 -4.1029 15 6 3.3324 3.6803 0.0005 16 6 4.0755 2.5217 0.0009 17 6 3.4406 1.2843 0.0014 18 8 4.1776 0.1461 0.0024 19 6 5.5127 0.2816 -0.1193 20 1 5.9569 1.2660 -0.1295 21 6 6.3167 -0.8432 -0.2316 22 7 5.7758 -2.0420 -0.2197 23 14 8.1676 -0.6555 -0.3996 24 1 8.7036 0.0511 0.7914 25 1 8.7940 -1.9980 -0.5029 26 1 8.4766 0.1297 -1.6216 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2157 2.3143 -0.0005 31 1 0.3067 4.9574 0.6805 32 1 0.9864 6.8224 -0.7349 33 1 4.6390 5.9461 -3.2558 34 1 3.2975 5.6552 -4.3889 35 1 5.3624 6.7612 -5.7207 36 1 5.1816 8.4181 -5.9327 37 1 3.8282 4.6398 0.0054 38 1 5.1542 2.5737 0.0017 39 1 6.3378 -2.8286 -0.2986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006497893.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:36 Heat of formation + Delta-G solvation = -149.437167 kcal Electronic energy + Delta-G solvation = -26422.362143 eV Core-core repulsion = 22296.840101 eV Total energy + Delta-G solvation = -4125.522043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.91456 -41.15354 -40.33630 -39.24470 -38.37295 -37.06155 -34.82072 -34.64752 -34.01856 -31.17899 -30.61811 -29.53594 -27.85070 -27.35296 -25.31163 -23.23227 -22.96603 -21.89783 -20.71467 -19.89517 -19.50867 -18.92572 -18.45771 -17.91853 -17.61368 -17.46748 -17.02889 -16.63383 -16.52346 -16.33373 -15.88227 -15.50335 -15.28226 -15.20325 -15.02559 -14.80766 -14.35110 -14.03521 -13.89285 -13.63461 -13.47875 -13.09716 -12.82585 -12.74831 -12.55729 -12.21611 -12.11229 -11.88053 -11.74300 -11.40945 -11.26682 -11.10524 -10.85764 -10.79077 -10.41248 -9.44116 -8.46924 -8.42342 -6.10006 -0.31418 0.59716 0.92030 1.34132 1.40747 1.45879 1.51237 1.53385 2.11219 2.17981 2.61713 2.71227 2.83054 3.14316 3.44417 3.78527 3.81461 4.03409 4.05167 4.08897 4.18543 4.20077 4.35175 4.46199 4.54957 4.58000 4.73266 4.73784 4.95241 5.00397 5.09849 5.21015 5.41119 5.45647 5.53136 5.73951 5.79320 5.95690 6.03408 6.27015 6.68106 6.86035 6.97620 7.18302 7.80638 8.77143 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.010055 B = 0.003902 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.042175 B = 7174.871783 C = 9386.393937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.347 6.347 3 C 0.030 3.970 4 C -0.128 4.128 5 C -0.134 4.134 6 C 0.048 3.952 7 C -0.227 4.227 8 C 0.486 3.514 9 O -0.517 6.517 10 O -0.346 6.346 11 C 0.040 3.960 12 C 0.525 3.475 13 N -0.825 5.825 14 O -0.574 6.574 15 C -0.031 4.031 16 C -0.221 4.221 17 C 0.100 3.900 18 O -0.217 6.217 19 C -0.416 4.416 20 H 0.101 0.899 21 C -0.022 4.022 22 N -0.917 5.917 23 Si 1.019 2.981 24 H -0.256 1.256 25 H -0.270 1.270 26 H -0.257 1.257 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.163 0.837 31 H 0.188 0.812 32 H 0.174 0.826 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.421 0.579 36 H 0.417 0.583 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.045 17.128 -5.526 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.262 6.262 3 C -0.015 4.015 4 C -0.147 4.147 5 C -0.135 4.135 6 C 0.030 3.970 7 C -0.246 4.246 8 C 0.335 3.665 9 O -0.408 6.408 10 O -0.262 6.262 11 C -0.037 4.037 12 C 0.309 3.691 13 N -0.392 5.392 14 O -0.453 6.453 15 C -0.049 4.049 16 C -0.240 4.240 17 C 0.048 3.952 18 O -0.123 6.123 19 C -0.492 4.492 20 H 0.118 0.882 21 C -0.220 4.220 22 N -0.555 5.555 23 Si 0.838 3.162 24 H -0.180 1.180 25 H -0.195 1.195 26 H -0.181 1.181 27 H 0.081 0.919 28 H 0.125 0.875 29 H 0.089 0.911 30 H 0.180 0.820 31 H 0.205 0.795 32 H 0.192 0.808 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.253 0.747 36 H 0.250 0.750 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.232 16.722 -5.276 18.967 hybrid contribution 1.248 -0.491 -0.659 1.494 sum -5.984 16.231 -5.935 18.288 Atomic orbital electron populations 1.23257 0.77141 1.04833 1.02102 1.86179 1.22968 1.26977 1.90121 1.18307 0.88905 0.85922 1.08329 1.21119 1.00036 0.89523 1.04015 1.18675 0.92746 0.93283 1.08835 1.22832 0.93637 0.87839 0.92732 1.21507 1.03045 1.03129 0.96907 1.20853 0.80676 0.82108 0.82868 1.91117 1.55841 1.24505 1.69347 1.86249 1.57112 1.39327 1.43553 1.22392 0.94763 0.96030 0.90558 1.20169 0.78949 0.89306 0.80718 1.43477 1.45646 1.16136 1.33964 1.90765 1.53895 1.33330 1.67274 1.20733 0.92985 0.96170 0.95013 1.20824 1.00321 0.91264 1.11586 1.19474 0.89789 0.87711 0.98180 1.83958 1.19991 1.27762 1.80596 1.21849 0.79193 0.95581 1.52567 0.88167 1.26636 1.06058 0.93478 0.95792 1.70198 1.38489 0.98699 1.48067 0.84654 0.73220 0.78401 0.79942 1.17991 1.19486 1.18113 0.91915 0.87519 0.91110 0.82004 0.79495 0.80813 0.87412 0.87160 0.74737 0.75002 0.86293 0.85970 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.81 113.37 1.11 1.71 16 2 O -0.35 -15.72 10.28 -79.08 -0.81 -16.53 16 3 C 0.03 1.37 6.70 22.56 0.15 1.52 16 4 C -0.13 -4.37 8.78 22.66 0.20 -4.17 16 5 C -0.13 -4.25 4.36 -20.14 -0.09 -4.34 16 6 C 0.05 0.97 9.78 23.83 0.23 1.20 16 7 C -0.23 -4.67 9.86 22.43 0.22 -4.45 16 8 C 0.49 13.33 6.86 68.69 0.47 13.80 16 9 O -0.52 -17.79 12.00 19.34 0.23 -17.56 16 10 O -0.35 -9.15 9.64 -52.07 -0.50 -9.65 16 11 C 0.04 0.85 5.85 71.24 0.42 1.27 16 12 C 0.52 10.78 8.18 87.66 0.72 11.50 16 13 N -0.83 -8.72 8.87 -173.54 -1.54 -10.26 16 14 O -0.57 -17.24 17.34 16.02 0.28 -16.96 16 15 C -0.03 -1.13 6.72 22.57 0.15 -0.98 16 16 C -0.22 -10.16 9.14 22.33 0.20 -9.96 16 17 C 0.10 5.28 6.67 22.81 0.15 5.43 16 18 O -0.22 -13.74 9.52 -6.36 -0.06 -13.81 16 19 C -0.42 -25.04 9.48 67.93 0.64 -24.40 16 20 H 0.10 5.52 5.19 -2.91 -0.02 5.50 16 21 C -0.02 -1.27 5.49 84.85 0.47 -0.80 16 22 N -0.92 -57.80 13.67 21.62 0.30 -57.51 16 23 Si 1.02 43.43 29.55 68.60 2.03 45.46 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 27 H 0.06 1.54 7.66 -2.39 -0.02 1.52 16 28 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.07 1.63 7.66 -2.38 -0.02 1.62 16 30 H 0.16 4.04 6.28 -2.91 -0.02 4.02 16 31 H 0.19 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 33 H 0.11 2.10 8.13 -2.39 -0.02 2.08 16 34 H 0.11 2.04 8.13 -2.38 -0.02 2.02 16 35 H 0.42 2.00 8.83 -92.71 -0.82 1.18 16 36 H 0.42 3.34 8.93 -92.70 -0.83 2.51 16 37 H 0.12 3.90 7.32 -2.91 -0.02 3.88 16 38 H 0.12 5.69 5.62 -2.91 -0.02 5.68 16 39 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -91.32 346.17 4.46 -86.86 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -0.51 Total: 22.62 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 5.05 Total: -12.67 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -1.24 Total: -67.77 kcal Atomic # 8 Polarization: -73.63 SS G_CDS: -0.87 Total: -74.50 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -91.32 4.46 -86.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006497893.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.573 kcal (2) G-P(sol) polarization free energy of solvation -91.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds