Wall clock time and date at job start Fri Apr 10 2020 14:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00330 * 2 1 4 4 C 1.52997 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47016 * 184.99940 * 4 3 2 6 6 C 1.50699 * 109.47006 * 305.00271 * 4 3 2 7 7 O 1.20822 * 120.00387 * 120.00371 * 6 4 3 8 8 O 1.34228 * 119.99798 * 299.72029 * 6 4 3 9 9 N 1.46501 * 109.46861 * 65.00137 * 4 3 2 10 10 C 1.46500 * 119.99958 * 299.99775 * 9 4 3 11 11 S 1.65603 * 120.00088 * 120.00313 * 9 4 3 12 12 O 1.42095 * 104.27755 * 206.06636 * 11 9 4 13 13 O 1.42096 * 104.27459 * 333.92370 * 11 9 4 14 14 C 1.81402 * 104.45088 * 89.99600 * 11 9 4 15 15 C 1.53001 * 109.47088 * 173.99786 * 14 11 9 16 16 C 1.50696 * 115.54879 * 65.27423 * 15 14 11 17 17 H 1.07997 * 119.99992 * 268.54301 * 16 15 14 18 18 C 1.37877 * 119.99900 * 88.55213 * 16 15 14 19 19 N 1.31521 * 119.99713 * 174.69673 * 18 16 15 20 20 Si 1.86792 * 120.00053 * 354.69180 * 18 16 15 21 21 H 1.48505 * 109.47108 * 92.55837 * 20 18 16 22 22 H 1.48505 * 109.47082 * 212.55720 * 20 18 16 23 23 H 1.48499 * 109.47310 * 332.55428 * 20 18 16 24 24 C 1.52999 * 117.49527 * 279.60417 * 15 14 11 25 25 C 1.52997 * 117.49425 * 210.94665 * 15 14 11 26 26 H 1.08999 * 109.47353 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46709 * 299.99961 * 1 2 3 28 28 H 1.08995 * 109.47728 * 59.99530 * 1 2 3 29 29 H 1.08998 * 109.46831 * 60.00011 * 3 2 1 30 30 H 1.08996 * 109.46800 * 300.00302 * 3 2 1 31 31 H 0.96703 * 117.00129 * 180.28011 * 8 6 4 32 32 H 1.08997 * 109.47531 * 90.00411 * 10 9 4 33 33 H 1.09007 * 109.46859 * 210.00552 * 10 9 4 34 34 H 1.09004 * 109.47134 * 330.00302 * 10 9 4 35 35 H 1.08999 * 109.47042 * 293.99519 * 14 11 9 36 36 H 1.08996 * 109.47352 * 53.99433 * 14 11 9 37 37 H 0.97003 * 119.99780 * 179.97438 * 19 18 16 38 38 H 1.08999 * 117.49873 * 0.02562 * 24 15 14 39 39 H 1.08997 * 117.49588 * 145.02347 * 24 15 14 40 40 H 1.09003 * 117.49186 * 214.97945 * 25 15 14 41 41 H 1.08996 * 117.50539 * 359.97074 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1764 0.0889 6 6 3.9723 0.3323 1.1628 7 8 4.5882 -0.6885 0.9664 8 8 3.6821 0.7100 2.4178 9 7 3.9756 0.5644 -1.2528 10 6 3.5139 -0.7803 -1.6060 11 16 4.9951 1.3833 -2.2688 12 8 4.7235 0.8376 -3.5524 13 8 4.7444 2.7533 -1.9872 14 6 6.6580 0.9138 -1.7165 15 6 7.6974 1.4932 -2.6781 16 6 7.7846 2.9973 -2.7116 17 1 7.1917 3.5569 -3.4199 18 6 8.6215 3.6589 -1.8381 19 7 8.7771 4.9612 -1.9357 20 14 9.5341 2.7056 -0.5161 21 1 10.8727 2.3121 -1.0245 22 1 9.6934 3.5591 0.6887 23 1 8.7616 1.4879 -0.1615 24 6 7.9443 0.7419 -3.9879 25 6 8.9943 0.7057 -2.8747 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8463 -0.8899 31 1 3.9867 0.1330 3.1315 32 1 2.5896 -0.7083 -2.1792 33 1 4.2751 -1.2801 -2.2052 34 1 3.3335 -1.3532 -0.6964 35 1 6.8321 1.3055 -0.7143 36 1 6.7427 -0.1728 -1.7016 37 1 9.3656 5.4267 -1.3210 38 1 7.3659 -0.1650 -4.1646 39 1 8.1703 1.3355 -4.8736 40 1 9.9107 1.2756 -3.0286 41 1 9.1074 -0.2249 -2.3186 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574403924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:11 Heat of formation + Delta-G solvation = -162.573943 kcal Electronic energy + Delta-G solvation = -27305.504737 eV Core-core repulsion = 23314.856992 eV Total energy + Delta-G solvation = -3990.647745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54471 -38.21291 -37.13615 -36.52453 -36.49358 -35.54588 -35.16428 -32.17993 -30.70040 -28.51916 -27.12572 -25.69534 -25.41545 -24.47133 -21.72008 -21.35864 -19.43636 -18.63685 -18.12161 -17.45180 -17.18787 -16.70338 -16.28091 -16.15897 -15.61561 -15.42725 -15.26208 -15.02718 -14.50175 -14.05360 -13.88089 -13.54300 -12.99868 -12.81733 -12.67444 -12.58948 -12.38614 -12.30435 -12.28766 -11.68053 -11.57496 -11.47152 -11.29442 -11.26808 -10.97619 -10.93944 -10.74004 -10.66098 -10.38079 -10.11888 -9.88760 -9.74731 -9.16552 -9.07212 -8.67699 -8.44797 -6.18957 -4.26387 0.77875 2.13478 2.72047 3.16958 3.21508 3.31587 3.35271 3.46714 4.33738 4.39292 4.49420 4.57245 4.81798 4.86072 4.95118 5.04754 5.05929 5.13565 5.18220 5.31593 5.42083 5.45014 5.48983 5.66804 5.82010 5.93617 6.03220 6.05398 6.17031 6.21762 6.42212 6.44007 6.53023 6.66512 6.83952 6.87604 7.06591 7.58468 7.80988 8.35079 8.86082 9.42578 10.92315 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.005234 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.309046 B = 5348.446310 C = 5834.069832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.061 3.939 4 C 0.163 3.837 5 H 0.154 0.846 6 C 0.476 3.524 7 O -0.498 6.498 8 O -0.515 6.515 9 N -0.991 5.991 10 C 0.106 3.894 11 S 2.609 3.391 12 O -0.953 6.953 13 O -0.938 6.938 14 C -0.572 4.572 15 C -0.001 4.001 16 C -0.509 4.509 17 H 0.087 0.913 18 C 0.090 3.910 19 N -0.882 5.882 20 Si 0.871 3.129 21 H -0.274 1.274 22 H -0.290 1.290 23 H -0.257 1.257 24 C -0.176 4.176 25 C -0.184 4.184 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.409 0.591 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.267 0.733 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.793 -10.607 7.804 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.018 4.018 4 C 0.054 3.946 5 H 0.171 0.829 6 C 0.315 3.685 7 O -0.384 6.384 8 O -0.326 6.326 9 N -0.826 5.826 10 C -0.039 4.039 11 S 2.706 3.294 12 O -0.944 6.944 13 O -0.928 6.928 14 C -0.704 4.704 15 C -0.004 4.004 16 C -0.546 4.546 17 H 0.105 0.895 18 C -0.115 4.115 19 N -0.517 5.517 20 Si 0.698 3.302 21 H -0.200 1.200 22 H -0.216 1.216 23 H -0.181 1.181 24 C -0.213 4.213 25 C -0.223 4.223 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.268 0.732 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.142 0.858 36 H 0.128 0.872 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.876 -10.074 6.804 18.448 hybrid contribution 1.105 -1.028 1.842 2.381 sum -12.771 -11.102 8.646 19.002 Atomic orbital electron populations 1.22740 0.80705 1.02793 1.00182 1.87926 1.20002 1.27108 1.95507 1.22815 0.90400 0.85823 1.02731 1.20464 0.95558 0.97331 0.81282 0.82869 1.23752 0.75873 0.85048 0.83859 1.90688 1.37261 1.25008 1.85446 1.84509 1.75237 1.55944 1.16938 1.57936 1.63753 1.29366 1.31531 1.21417 0.99470 0.81609 1.01418 1.05367 0.76122 0.73999 0.73933 1.93523 1.83902 1.79935 1.37018 1.93571 1.83822 1.31042 1.84331 1.30306 1.20671 1.08628 1.10814 1.18886 0.93287 0.94873 0.93331 1.20338 1.27304 0.85863 1.21116 0.89475 1.24933 0.95453 0.94555 0.96565 1.69898 1.36812 1.07915 1.37083 0.86970 0.80977 0.80593 0.81658 1.20003 1.21644 1.18082 1.23027 1.03075 1.01657 0.93585 1.22984 0.94640 1.01027 1.03619 0.89626 0.93987 0.93752 0.90656 0.90638 0.73186 0.92538 0.91624 0.90110 0.85832 0.87225 0.92272 0.89968 0.88576 0.88881 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.26 7.91 -35.23 -0.28 -4.54 16 3 C 0.06 0.67 5.62 37.16 0.21 0.88 16 4 C 0.16 2.23 3.01 -69.08 -0.21 2.02 16 5 H 0.15 2.06 6.87 -51.93 -0.36 1.70 16 6 C 0.48 6.31 6.88 36.01 0.25 6.56 16 7 O -0.50 -7.75 15.26 -18.75 -0.29 -8.03 16 8 O -0.51 -5.15 13.36 -39.25 -0.52 -5.67 16 9 N -0.99 -15.54 2.78 -115.85 -0.32 -15.87 16 10 C 0.11 1.48 8.03 59.85 0.48 1.96 16 11 S 2.61 51.65 5.10 -107.50 -0.55 51.10 16 12 O -0.95 -20.25 17.09 -57.54 -0.98 -21.24 16 13 O -0.94 -21.13 16.23 -57.54 -0.93 -22.07 16 14 C -0.57 -11.67 5.65 37.16 0.21 -11.46 16 15 C 0.00 -0.02 0.79 -155.66 -0.12 -0.15 16 16 C -0.51 -14.17 8.77 -34.44 -0.30 -14.47 16 17 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 18 C 0.09 2.54 5.47 -17.82 -0.10 2.45 16 19 N -0.88 -26.47 13.96 55.43 0.77 -25.69 16 20 Si 0.87 21.12 24.96 -169.99 -4.24 16.87 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.26 -5.83 5.68 56.52 0.32 -5.51 16 24 C -0.18 -3.68 9.96 -26.69 -0.27 -3.95 16 25 C -0.18 -3.89 7.67 -26.69 -0.20 -4.10 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.41 2.40 9.10 45.56 0.41 2.81 16 32 H 0.06 0.74 7.97 -51.93 -0.41 0.32 16 33 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 34 H 0.08 1.11 5.72 -51.93 -0.30 0.81 16 35 H 0.12 2.52 6.53 -51.92 -0.34 2.18 16 36 H 0.11 1.92 8.09 -51.93 -0.42 1.50 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.10 2.01 8.14 -51.93 -0.42 1.58 16 40 H 0.09 2.03 7.34 -51.93 -0.38 1.65 16 41 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 350.33 15.07 5.28 5.28 Total: -1.00 -35.71 350.33 -6.23 -41.93 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.22 Total: 6.81 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 1.06 Total: -18.90 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.45 Total: -41.56 kcal Atomic # 8 Polarization: -58.54 SS G_CDS: -3.01 Total: -61.54 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.24 Total: 16.87 kcal Atomic # 16 Polarization: 51.65 SS G_CDS: -0.55 Total: 51.10 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.71 -6.23 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574403924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.641 kcal (2) G-P(sol) polarization free energy of solvation -35.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds