Wall clock time and date at job start Fri Apr 10 2020 14:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00330 * 2 1 4 4 C 1.52997 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47016 * 184.99940 * 4 3 2 6 6 C 1.50699 * 109.47006 * 305.00271 * 4 3 2 7 7 O 1.20822 * 120.00387 * 120.00371 * 6 4 3 8 8 O 1.34228 * 119.99798 * 299.72029 * 6 4 3 9 9 N 1.46501 * 109.46861 * 65.00137 * 4 3 2 10 10 C 1.46500 * 119.99958 * 299.99775 * 9 4 3 11 11 S 1.65603 * 120.00088 * 120.00313 * 9 4 3 12 12 O 1.42095 * 104.27755 * 206.06636 * 11 9 4 13 13 O 1.42096 * 104.27459 * 333.92370 * 11 9 4 14 14 C 1.81402 * 104.45088 * 89.99600 * 11 9 4 15 15 C 1.53001 * 109.47088 * 173.99786 * 14 11 9 16 16 C 1.50696 * 115.54879 * 65.27423 * 15 14 11 17 17 H 1.07997 * 119.99992 * 268.54301 * 16 15 14 18 18 C 1.37877 * 119.99900 * 88.55213 * 16 15 14 19 19 N 1.31521 * 119.99713 * 174.69673 * 18 16 15 20 20 Si 1.86792 * 120.00053 * 354.69180 * 18 16 15 21 21 H 1.48505 * 109.47108 * 92.55837 * 20 18 16 22 22 H 1.48505 * 109.47082 * 212.55720 * 20 18 16 23 23 H 1.48499 * 109.47310 * 332.55428 * 20 18 16 24 24 C 1.52999 * 117.49527 * 279.60417 * 15 14 11 25 25 C 1.52997 * 117.49425 * 210.94665 * 15 14 11 26 26 H 1.08999 * 109.47353 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46709 * 299.99961 * 1 2 3 28 28 H 1.08995 * 109.47728 * 59.99530 * 1 2 3 29 29 H 1.08998 * 109.46831 * 60.00011 * 3 2 1 30 30 H 1.08996 * 109.46800 * 300.00302 * 3 2 1 31 31 H 0.96703 * 117.00129 * 180.28011 * 8 6 4 32 32 H 1.08997 * 109.47531 * 90.00411 * 10 9 4 33 33 H 1.09007 * 109.46859 * 210.00552 * 10 9 4 34 34 H 1.09004 * 109.47134 * 330.00302 * 10 9 4 35 35 H 1.08999 * 109.47042 * 293.99519 * 14 11 9 36 36 H 1.08996 * 109.47352 * 53.99433 * 14 11 9 37 37 H 0.97003 * 119.99780 * 179.97438 * 19 18 16 38 38 H 1.08999 * 117.49873 * 0.02562 * 24 15 14 39 39 H 1.08997 * 117.49588 * 145.02347 * 24 15 14 40 40 H 1.09003 * 117.49186 * 214.97945 * 25 15 14 41 41 H 1.08996 * 117.50539 * 359.97074 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1764 0.0889 6 6 3.9723 0.3323 1.1628 7 8 4.5882 -0.6885 0.9664 8 8 3.6821 0.7100 2.4178 9 7 3.9756 0.5644 -1.2528 10 6 3.5139 -0.7803 -1.6060 11 16 4.9951 1.3833 -2.2688 12 8 4.7235 0.8376 -3.5524 13 8 4.7444 2.7533 -1.9872 14 6 6.6580 0.9138 -1.7165 15 6 7.6974 1.4932 -2.6781 16 6 7.7846 2.9973 -2.7116 17 1 7.1917 3.5569 -3.4199 18 6 8.6215 3.6589 -1.8381 19 7 8.7771 4.9612 -1.9357 20 14 9.5341 2.7056 -0.5161 21 1 10.8727 2.3121 -1.0245 22 1 9.6934 3.5591 0.6887 23 1 8.7616 1.4879 -0.1615 24 6 7.9443 0.7419 -3.9879 25 6 8.9943 0.7057 -2.8747 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8463 -0.8899 31 1 3.9867 0.1330 3.1315 32 1 2.5896 -0.7083 -2.1792 33 1 4.2751 -1.2801 -2.2052 34 1 3.3335 -1.3532 -0.6964 35 1 6.8321 1.3055 -0.7143 36 1 6.7427 -0.1728 -1.7016 37 1 9.3656 5.4267 -1.3210 38 1 7.3659 -0.1650 -4.1646 39 1 8.1703 1.3355 -4.8736 40 1 9.9107 1.2756 -3.0286 41 1 9.1074 -0.2249 -2.3186 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574403924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:10 Heat of formation + Delta-G solvation = -191.754704 kcal Electronic energy + Delta-G solvation = -27306.770110 eV Core-core repulsion = 23314.856992 eV Total energy + Delta-G solvation = -3991.913117 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52473 -39.05518 -38.87235 -38.14563 -37.45635 -36.95029 -36.43837 -34.31037 -31.70005 -30.14564 -27.91943 -27.61869 -26.54988 -25.37372 -23.38364 -22.43289 -21.21727 -19.96420 -19.33032 -18.60612 -18.59997 -18.21401 -17.34772 -17.22551 -16.96007 -16.78874 -16.59412 -16.31070 -15.75678 -15.53896 -15.02792 -14.84932 -14.71100 -14.47227 -14.02671 -13.89683 -13.53376 -13.49263 -13.25540 -13.15847 -13.05166 -12.82547 -12.73350 -12.69554 -12.44430 -12.39837 -12.08770 -12.01436 -11.93002 -11.74589 -11.62575 -10.99589 -10.75745 -10.64091 -10.44328 -10.01954 -8.34095 -6.46546 -0.74574 1.14228 1.32329 1.34738 1.46778 1.56050 2.07098 2.32706 2.68912 2.84190 2.95333 3.09161 3.19152 3.44086 3.71965 3.90424 4.01673 4.07250 4.26235 4.30493 4.34767 4.39112 4.54437 4.57561 4.60411 4.64585 4.76195 4.82346 4.89656 4.94797 4.98697 5.10398 5.16849 5.37142 5.42114 5.58854 5.59990 6.12688 6.18516 6.64523 6.96162 7.25950 8.81762 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.005234 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.309046 B = 5348.446310 C = 5834.069832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.063 3.937 4 C 0.148 3.852 5 H 0.150 0.850 6 C 0.483 3.517 7 O -0.523 6.523 8 O -0.504 6.504 9 N -0.984 5.984 10 C 0.104 3.896 11 S 2.619 3.381 12 O -0.974 6.974 13 O -0.977 6.977 14 C -0.573 4.573 15 C -0.034 4.034 16 C -0.512 4.512 17 H 0.035 0.965 18 C 0.033 3.967 19 N -0.936 5.936 20 Si 0.927 3.073 21 H -0.262 1.262 22 H -0.291 1.291 23 H -0.227 1.227 24 C -0.170 4.170 25 C -0.171 4.171 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.430 0.570 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.145 0.855 37 H 0.270 0.730 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.241 -13.497 9.680 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.015 4.015 4 C 0.039 3.961 5 H 0.167 0.833 6 C 0.323 3.677 7 O -0.412 6.412 8 O -0.317 6.317 9 N -0.821 5.821 10 C -0.040 4.040 11 S 2.717 3.283 12 O -0.964 6.964 13 O -0.967 6.967 14 C -0.705 4.705 15 C -0.036 4.036 16 C -0.549 4.549 17 H 0.053 0.947 18 C -0.167 4.167 19 N -0.574 5.574 20 Si 0.750 3.250 21 H -0.187 1.187 22 H -0.217 1.217 23 H -0.149 1.149 24 C -0.207 4.207 25 C -0.209 4.209 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.292 0.708 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.142 0.858 36 H 0.163 0.837 37 H 0.079 0.921 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.344 -12.980 8.686 21.206 hybrid contribution 1.113 -0.101 1.232 1.663 sum -13.231 -13.081 9.918 21.084 Atomic orbital electron populations 1.22928 0.79027 1.03911 1.01054 1.87888 1.21790 1.26896 1.95684 1.22798 0.88561 0.86296 1.03870 1.20742 0.97489 0.97133 0.80761 0.83295 1.23493 0.75263 0.84359 0.84564 1.90676 1.38504 1.25999 1.85979 1.84453 1.74704 1.56189 1.16404 1.57510 1.62660 1.29828 1.32077 1.21562 0.99928 0.80609 1.01942 1.04767 0.76338 0.73325 0.73914 1.93484 1.84248 1.80055 1.38608 1.93521 1.84458 1.33753 1.84957 1.30216 1.19840 1.10707 1.09707 1.18813 0.96157 0.92510 0.96146 1.20421 1.26079 0.88681 1.19703 0.94679 1.25823 0.96533 0.95329 0.99002 1.70048 1.38557 1.10056 1.38728 0.86057 0.80315 0.80206 0.78417 1.18684 1.21731 1.14945 1.23108 1.03121 1.01979 0.92519 1.23073 0.93100 1.01527 1.03234 0.88441 0.92586 0.93420 0.88169 0.90862 0.70801 0.91779 0.91132 0.89444 0.85793 0.83651 0.92141 0.87125 0.89672 0.89957 0.87023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.40 -7.96 7.91 -148.98 -1.18 -9.14 16 3 C 0.06 1.27 5.62 71.98 0.40 1.68 16 4 C 0.15 3.82 3.01 44.24 0.13 3.95 16 5 H 0.15 3.94 6.87 -2.39 -0.02 3.92 16 6 C 0.48 11.67 6.88 71.24 0.49 12.16 16 7 O -0.52 -14.91 15.26 21.98 0.34 -14.57 16 8 O -0.50 -8.61 13.36 -51.40 -0.69 -9.29 16 9 N -0.98 -29.48 2.78 -520.45 -1.45 -30.92 16 10 C 0.10 2.70 8.03 127.77 1.03 3.72 16 11 S 2.62 102.69 5.10 -56.49 -0.29 102.40 16 12 O -0.97 -40.92 17.09 -127.65 -2.18 -43.11 16 13 O -0.98 -45.33 16.23 -127.65 -2.07 -47.41 16 14 C -0.57 -22.16 5.65 71.98 0.41 -21.75 16 15 C -0.03 -1.53 0.79 -52.93 -0.04 -1.57 16 16 C -0.51 -29.30 8.77 25.60 0.22 -29.07 16 17 H 0.03 2.30 8.06 -2.91 -0.02 2.27 16 18 C 0.03 1.90 5.47 84.65 0.46 2.36 16 19 N -0.94 -58.42 13.96 21.45 0.30 -58.13 16 20 Si 0.93 42.71 24.96 68.60 1.71 44.42 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 23 H -0.23 -9.28 5.68 99.48 0.57 -8.71 16 24 C -0.17 -6.81 9.96 30.62 0.30 -6.51 16 25 C -0.17 -6.71 7.67 30.62 0.23 -6.48 16 26 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.43 3.62 9.10 -74.06 -0.67 2.95 16 32 H 0.06 1.55 7.97 -2.39 -0.02 1.54 16 33 H 0.07 1.75 7.79 -2.38 -0.02 1.73 16 34 H 0.09 2.19 5.72 -2.39 -0.01 2.18 16 35 H 0.12 4.77 6.53 -2.39 -0.02 4.75 16 36 H 0.15 4.51 8.09 -2.39 -0.02 4.49 16 37 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 38 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 39 H 0.08 3.54 8.14 -2.39 -0.02 3.53 16 40 H 0.08 3.41 7.34 -2.39 -0.02 3.39 16 41 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 Total: -1.00 -79.40 350.33 -0.38 -79.78 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.24 Total: 25.88 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 4.89 Total: -39.91 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -1.15 Total: -89.05 kcal Atomic # 8 Polarization: -117.73 SS G_CDS: -5.78 Total: -123.52 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.71 Total: 44.42 kcal Atomic # 16 Polarization: 102.69 SS G_CDS: -0.29 Total: 102.40 kcal Total: -79.40 -0.38 -79.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574403924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.979 kcal (2) G-P(sol) polarization free energy of solvation -79.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds