Wall clock time and date at job start Fri Apr 10 2020 14:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99820 * 2 1 4 4 C 1.53001 * 109.47099 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47246 * 64.99979 * 4 3 2 6 6 C 1.46497 * 119.99877 * 275.00242 * 5 4 3 7 7 C 1.50699 * 109.47183 * 274.99975 * 6 5 4 8 8 O 1.20833 * 120.00048 * 0.02562 * 7 6 5 9 9 O 1.34232 * 120.00289 * 180.02562 * 7 6 5 10 10 S 1.65598 * 120.00027 * 94.99980 * 5 4 3 11 11 O 1.42104 * 104.27721 * 153.92650 * 10 5 4 12 12 O 1.42102 * 104.27547 * 26.07253 * 10 5 4 13 13 C 1.81402 * 104.44974 * 270.00197 * 10 5 4 14 14 C 1.53002 * 109.46958 * 186.46059 * 13 10 5 15 15 C 1.50694 * 115.55360 * 299.70423 * 14 13 10 16 16 H 1.08002 * 120.00402 * 95.16284 * 15 14 13 17 17 C 1.37870 * 120.00327 * 275.16745 * 15 14 13 18 18 N 1.31521 * 119.99808 * 7.14458 * 17 15 14 19 19 Si 1.86794 * 120.00505 * 187.14717 * 17 15 14 20 20 H 1.48499 * 109.47464 * 179.97438 * 19 17 15 21 21 H 1.48509 * 109.47082 * 299.99556 * 19 17 15 22 22 H 1.48498 * 109.47518 * 59.99777 * 19 17 15 23 23 C 1.53003 * 117.49589 * 85.37339 * 14 13 10 24 24 C 1.52997 * 117.49739 * 154.02776 * 14 13 10 25 25 H 1.09001 * 109.46787 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47083 * 299.99549 * 1 2 3 27 27 H 1.08995 * 109.47436 * 59.99675 * 1 2 3 28 28 H 1.09004 * 109.47043 * 60.00299 * 3 2 1 29 29 H 1.08998 * 109.47467 * 300.00201 * 3 2 1 30 30 H 1.09001 * 109.47003 * 305.00049 * 4 3 2 31 31 H 1.09003 * 109.47056 * 185.00442 * 4 3 2 32 32 H 1.08999 * 109.47474 * 34.99809 * 6 5 4 33 33 H 1.08999 * 109.47181 * 155.00176 * 6 5 4 34 34 H 0.96699 * 116.99834 * 179.97438 * 9 7 6 35 35 H 1.08998 * 109.47209 * 66.46354 * 13 10 5 36 36 H 1.09000 * 109.46841 * 306.46200 * 13 10 5 37 37 H 0.97009 * 119.99725 * 355.44422 * 18 17 15 38 38 H 1.09000 * 117.50124 * 215.00457 * 23 14 13 39 39 H 1.09003 * 117.49892 * 0.02562 * 23 14 13 40 40 H 1.08999 * 117.49975 * 359.97438 * 24 14 13 41 41 H 1.09004 * 117.50016 * 144.97069 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0004 -0.8949 -1.3781 7 6 5.2994 -1.4245 -0.8275 8 8 6.1201 -0.6612 -0.3760 9 8 5.5447 -2.7442 -0.8384 10 16 4.4454 1.5131 -2.5263 11 8 5.3412 0.6921 -3.2631 12 8 4.8878 2.7197 -1.9200 13 6 2.9203 1.7953 -3.4671 14 6 3.2516 2.5320 -4.7664 15 6 3.8974 3.8835 -4.6009 16 1 4.9728 3.9763 -4.6378 17 6 3.1155 5.0015 -4.4023 18 7 1.8197 4.8732 -4.2169 19 14 3.8962 6.6984 -4.3967 20 1 2.8483 7.7248 -4.1654 21 1 4.9103 6.7731 -3.3143 22 1 4.5508 6.9466 -5.7063 23 6 3.6793 1.6871 -5.9682 24 6 2.2974 2.3449 -5.9476 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5682 0.8409 31 1 3.9785 2.1766 0.0890 32 1 3.1679 -1.3218 -0.8190 33 1 3.9119 -1.1708 -2.4289 34 1 6.3917 -3.0363 -0.4747 35 1 2.2331 2.3977 -2.8730 36 1 2.4551 0.8376 -3.7007 37 1 1.4041 3.9994 -4.2855 38 1 4.4278 2.1088 -6.6391 39 1 3.7242 0.6064 -5.8332 40 1 1.4338 1.6966 -5.7992 41 1 2.1362 3.1995 -6.6047 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591350321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:15 Heat of formation + Delta-G solvation = -179.876548 kcal Electronic energy + Delta-G solvation = -27218.570154 eV Core-core repulsion = 23227.172112 eV Total energy + Delta-G solvation = -3991.398042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.15939 -38.21659 -37.12904 -36.47706 -36.32393 -35.49800 -35.11985 -32.02374 -30.56529 -28.40233 -27.52108 -26.04134 -25.01868 -22.75621 -21.69872 -21.44539 -19.79798 -18.49370 -18.12615 -17.45293 -17.01504 -16.74714 -16.36137 -16.15688 -15.63579 -15.36181 -15.28167 -14.92533 -14.37264 -13.99227 -13.74586 -13.35184 -13.20225 -12.75103 -12.68574 -12.45252 -12.36956 -12.17329 -11.89943 -11.48953 -11.41328 -11.34906 -11.21291 -11.08112 -11.00477 -10.79544 -10.69042 -10.66426 -10.39252 -10.10156 -9.82732 -9.69009 -9.13030 -8.70444 -8.52823 -8.35910 -6.50241 -4.29068 0.82257 2.29000 2.90527 3.26445 3.43572 3.47713 3.64309 3.69274 4.45617 4.50768 4.64920 4.68938 4.90697 5.01448 5.11100 5.13759 5.21149 5.22053 5.28858 5.36146 5.42001 5.46656 5.51191 5.58660 5.74732 5.91028 5.95798 6.03952 6.12427 6.29484 6.49723 6.51705 6.56430 6.71291 6.96624 7.03546 7.13526 7.94603 7.98909 8.29766 8.72575 9.49982 10.89540 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.005351 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.114878 B = 5231.396061 C = 5784.430161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.390 6.390 3 C 0.034 3.966 4 C 0.119 3.881 5 N -0.988 5.988 6 C 0.139 3.861 7 C 0.461 3.539 8 O -0.504 6.504 9 O -0.520 6.520 10 S 2.611 3.389 11 O -0.964 6.964 12 O -0.934 6.934 13 C -0.565 4.565 14 C 0.020 3.980 15 C -0.593 4.593 16 H 0.062 0.938 17 C 0.042 3.958 18 N -0.897 5.897 19 Si 1.061 2.939 20 H -0.281 1.281 21 H -0.280 1.280 22 H -0.285 1.285 23 C -0.190 4.190 24 C -0.163 4.163 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.407 0.593 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.274 0.726 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.939 -12.786 8.243 15.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.309 6.309 3 C -0.044 4.044 4 C -0.006 4.006 5 N -0.822 5.822 6 C 0.010 3.990 7 C 0.300 3.700 8 O -0.390 6.390 9 O -0.332 6.332 10 S 2.709 3.291 11 O -0.954 6.954 12 O -0.925 6.925 13 C -0.698 4.698 14 C 0.018 3.982 15 C -0.630 4.630 16 H 0.080 0.920 17 C -0.166 4.166 18 N -0.530 5.530 19 Si 0.888 3.112 20 H -0.206 1.206 21 H -0.206 1.206 22 H -0.211 1.211 23 C -0.227 4.227 24 C -0.202 4.202 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.134 0.866 32 H 0.149 0.851 33 H 0.137 0.863 34 H 0.265 0.735 35 H 0.143 0.857 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.410 -10.699 8.343 13.780 hybrid contribution -0.136 -1.802 -0.052 1.808 sum -2.547 -12.500 8.291 15.215 Atomic orbital electron populations 1.22753 0.81166 1.02531 1.00269 1.87808 1.19624 1.27958 1.95498 1.23262 0.94508 0.85045 1.01575 1.21475 0.91479 1.00980 0.86690 1.57807 1.82522 1.13413 1.28439 1.20598 0.92869 0.81475 1.04019 1.24335 0.90037 0.79868 0.75740 1.90721 1.47310 1.58148 1.42820 1.84517 1.44362 1.26393 1.77889 1.05247 0.77223 0.73278 0.73401 1.93501 1.60876 1.68607 1.72436 1.93536 1.79074 1.45409 1.74440 1.30199 1.19838 1.07173 1.12553 1.18562 1.01003 0.95360 0.83288 1.21395 0.94716 0.90132 1.56750 0.91999 1.25808 0.95339 1.03642 0.91783 1.70789 1.10894 1.28475 1.42847 0.83659 0.75593 0.74790 0.77143 1.20600 1.20578 1.21107 1.23054 0.98608 0.97031 1.04054 1.22792 0.91718 1.01873 1.03828 0.89782 0.94159 0.93781 0.91725 0.92333 0.89505 0.86556 0.85072 0.86315 0.73458 0.85682 0.88006 0.91500 0.89216 0.90601 0.91163 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.49 9.02 -35.23 -0.32 -4.81 16 3 C 0.03 0.42 6.28 37.16 0.23 0.65 16 4 C 0.12 1.67 6.09 -4.04 -0.02 1.65 16 5 N -0.99 -15.81 2.19 -115.66 -0.25 -16.06 16 6 C 0.14 1.84 5.69 -5.20 -0.03 1.81 16 7 C 0.46 6.64 8.39 36.01 0.30 6.94 16 8 O -0.50 -9.12 17.18 -18.76 -0.32 -9.44 16 9 O -0.52 -5.60 13.42 -39.26 -0.53 -6.13 16 10 S 2.61 54.50 5.01 -107.50 -0.54 53.96 16 11 O -0.96 -21.84 16.99 -57.54 -0.98 -22.82 16 12 O -0.93 -22.87 16.04 -57.54 -0.92 -23.79 16 13 C -0.57 -11.45 5.95 37.16 0.22 -11.23 16 14 C 0.02 0.48 0.95 -155.66 -0.15 0.33 16 15 C -0.59 -16.27 7.90 -34.45 -0.27 -16.54 16 16 H 0.06 1.77 7.82 -52.49 -0.41 1.35 16 17 C 0.04 1.14 5.39 -17.82 -0.10 1.05 16 18 N -0.90 -25.16 13.57 55.43 0.75 -24.40 16 19 Si 1.06 25.04 29.91 -169.99 -5.08 19.95 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.19 -4.08 9.95 -26.70 -0.27 -4.35 16 24 C -0.16 -3.55 8.74 -26.70 -0.23 -3.78 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.78 7.10 -51.93 -0.37 0.42 16 30 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 31 H 0.12 1.76 6.82 -51.93 -0.35 1.40 16 32 H 0.13 1.38 6.60 -51.93 -0.34 1.04 16 33 H 0.12 1.43 7.61 -51.93 -0.40 1.03 16 34 H 0.41 2.70 9.10 45.56 0.41 3.12 16 35 H 0.12 2.56 6.78 -51.92 -0.35 2.21 16 36 H 0.10 1.68 8.11 -51.92 -0.42 1.26 16 37 H 0.27 7.45 6.17 -40.82 -0.25 7.20 16 38 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 360.35 15.07 5.43 5.43 Total: -1.00 -36.26 360.35 -7.04 -43.30 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.08 Total: 6.90 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 0.80 Total: -22.09 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.50 Total: -40.47 kcal Atomic # 8 Polarization: -63.92 SS G_CDS: -3.07 Total: -66.99 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.95 kcal Atomic # 16 Polarization: 54.50 SS G_CDS: -0.54 Total: 53.96 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.26 -7.04 -43.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591350321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.579 kcal (2) G-P(sol) polarization free energy of solvation -36.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds