Wall clock time and date at job start Fri Apr 10 2020 14:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99820 * 2 1 4 4 C 1.53001 * 109.47099 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47246 * 64.99979 * 4 3 2 6 6 C 1.46497 * 119.99877 * 275.00242 * 5 4 3 7 7 C 1.50699 * 109.47183 * 274.99975 * 6 5 4 8 8 O 1.20833 * 120.00048 * 0.02562 * 7 6 5 9 9 O 1.34232 * 120.00289 * 180.02562 * 7 6 5 10 10 S 1.65598 * 120.00027 * 94.99980 * 5 4 3 11 11 O 1.42104 * 104.27721 * 153.92650 * 10 5 4 12 12 O 1.42102 * 104.27547 * 26.07253 * 10 5 4 13 13 C 1.81402 * 104.44974 * 270.00197 * 10 5 4 14 14 C 1.53002 * 109.46958 * 186.46059 * 13 10 5 15 15 C 1.50694 * 115.55360 * 299.70423 * 14 13 10 16 16 H 1.08002 * 120.00402 * 95.16284 * 15 14 13 17 17 C 1.37870 * 120.00327 * 275.16745 * 15 14 13 18 18 N 1.31521 * 119.99808 * 7.14458 * 17 15 14 19 19 Si 1.86794 * 120.00505 * 187.14717 * 17 15 14 20 20 H 1.48499 * 109.47464 * 179.97438 * 19 17 15 21 21 H 1.48509 * 109.47082 * 299.99556 * 19 17 15 22 22 H 1.48498 * 109.47518 * 59.99777 * 19 17 15 23 23 C 1.53003 * 117.49589 * 85.37339 * 14 13 10 24 24 C 1.52997 * 117.49739 * 154.02776 * 14 13 10 25 25 H 1.09001 * 109.46787 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47083 * 299.99549 * 1 2 3 27 27 H 1.08995 * 109.47436 * 59.99675 * 1 2 3 28 28 H 1.09004 * 109.47043 * 60.00299 * 3 2 1 29 29 H 1.08998 * 109.47467 * 300.00201 * 3 2 1 30 30 H 1.09001 * 109.47003 * 305.00049 * 4 3 2 31 31 H 1.09003 * 109.47056 * 185.00442 * 4 3 2 32 32 H 1.08999 * 109.47474 * 34.99809 * 6 5 4 33 33 H 1.08999 * 109.47181 * 155.00176 * 6 5 4 34 34 H 0.96699 * 116.99834 * 179.97438 * 9 7 6 35 35 H 1.08998 * 109.47209 * 66.46354 * 13 10 5 36 36 H 1.09000 * 109.46841 * 306.46200 * 13 10 5 37 37 H 0.97009 * 119.99725 * 355.44422 * 18 17 15 38 38 H 1.09000 * 117.50124 * 215.00457 * 23 14 13 39 39 H 1.09003 * 117.49892 * 0.02562 * 23 14 13 40 40 H 1.08999 * 117.49975 * 359.97438 * 24 14 13 41 41 H 1.09004 * 117.50016 * 144.97069 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0004 -0.8949 -1.3781 7 6 5.2994 -1.4245 -0.8275 8 8 6.1201 -0.6612 -0.3760 9 8 5.5447 -2.7442 -0.8384 10 16 4.4454 1.5131 -2.5263 11 8 5.3412 0.6921 -3.2631 12 8 4.8878 2.7197 -1.9200 13 6 2.9203 1.7953 -3.4671 14 6 3.2516 2.5320 -4.7664 15 6 3.8974 3.8835 -4.6009 16 1 4.9728 3.9763 -4.6378 17 6 3.1155 5.0015 -4.4023 18 7 1.8197 4.8732 -4.2169 19 14 3.8962 6.6984 -4.3967 20 1 2.8483 7.7248 -4.1654 21 1 4.9103 6.7731 -3.3143 22 1 4.5508 6.9466 -5.7063 23 6 3.6793 1.6871 -5.9682 24 6 2.2974 2.3449 -5.9476 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5682 0.8409 31 1 3.9785 2.1766 0.0890 32 1 3.1679 -1.3218 -0.8190 33 1 3.9119 -1.1708 -2.4289 34 1 6.3917 -3.0363 -0.4747 35 1 2.2331 2.3977 -2.8730 36 1 2.4551 0.8376 -3.7007 37 1 1.4041 3.9994 -4.2855 38 1 4.4278 2.1088 -6.6391 39 1 3.7242 0.6064 -5.8332 40 1 1.4338 1.6966 -5.7992 41 1 2.1362 3.1995 -6.6047 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591350321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:14 Heat of formation + Delta-G solvation = -207.791973 kcal Electronic energy + Delta-G solvation = -27219.780658 eV Core-core repulsion = 23227.172112 eV Total energy + Delta-G solvation = -3992.608546 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25695 -39.14531 -38.91268 -38.14580 -37.38955 -36.90776 -36.55060 -34.05902 -31.59326 -30.04549 -28.53961 -27.09284 -26.85147 -23.81946 -23.16071 -22.83482 -21.62080 -19.93669 -19.22299 -18.91672 -18.76758 -17.91554 -17.55598 -17.11069 -16.93636 -16.73035 -16.52483 -15.95297 -15.86246 -15.65149 -15.40007 -15.02044 -14.58923 -14.25386 -13.93056 -13.74960 -13.60904 -13.35933 -13.17787 -13.13825 -13.00638 -12.77763 -12.69317 -12.57695 -12.40943 -12.30629 -12.12461 -12.03905 -11.94362 -11.85709 -11.51175 -10.63744 -10.57810 -10.54458 -10.43932 -10.06304 -8.63048 -6.41006 -0.75656 1.19806 1.51643 1.57848 1.64486 1.77323 2.16651 2.52564 2.82329 2.91376 3.09070 3.14813 3.24191 3.46273 3.84799 3.95158 4.07334 4.11361 4.24366 4.31480 4.38110 4.40319 4.43605 4.53260 4.62180 4.62339 4.68481 4.82393 4.83196 4.86662 4.95212 5.01443 5.23078 5.38497 5.42048 5.61560 5.99948 6.14143 6.19977 6.64228 6.98708 7.40774 8.79071 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.005351 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.114878 B = 5231.396061 C = 5784.430161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.040 3.960 4 C 0.115 3.885 5 N -0.982 5.982 6 C 0.130 3.870 7 C 0.463 3.537 8 O -0.550 6.550 9 O -0.506 6.506 10 S 2.617 3.383 11 O -0.989 6.989 12 O -0.984 6.984 13 C -0.554 4.554 14 C -0.017 4.017 15 C -0.608 4.608 16 H 0.035 0.965 17 C 0.003 3.997 18 N -0.913 5.913 19 Si 1.088 2.912 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.182 4.182 24 C -0.152 4.152 25 H 0.104 0.896 26 H 0.050 0.950 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.165 0.835 33 H 0.135 0.865 34 H 0.426 0.574 35 H 0.121 0.879 36 H 0.144 0.856 37 H 0.272 0.728 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 -14.877 8.616 17.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C -0.038 4.038 4 C -0.010 4.010 5 N -0.818 5.818 6 C 0.003 3.997 7 C 0.305 3.695 8 O -0.440 6.440 9 O -0.319 6.319 10 S 2.715 3.285 11 O -0.979 6.979 12 O -0.974 6.974 13 C -0.687 4.687 14 C -0.019 4.019 15 C -0.645 4.645 16 H 0.053 0.947 17 C -0.201 4.201 18 N -0.547 5.547 19 Si 0.911 3.089 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.219 4.219 24 C -0.191 4.191 25 H 0.123 0.877 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.182 0.818 33 H 0.153 0.847 34 H 0.288 0.712 35 H 0.139 0.861 36 H 0.163 0.837 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.870 -12.830 8.704 15.980 hybrid contribution 0.327 -1.304 -0.140 1.352 sum -3.544 -14.135 8.565 16.903 Atomic orbital electron populations 1.22943 0.79782 1.04017 1.00547 1.87769 1.21019 1.27112 1.95569 1.23117 0.93103 0.85706 1.01907 1.21605 0.92876 1.00312 0.86229 1.57345 1.82386 1.14459 1.27632 1.21011 0.93499 0.79554 1.05643 1.24536 0.89821 0.80480 0.74702 1.90720 1.48788 1.59424 1.45068 1.84466 1.45731 1.24315 1.77365 1.04725 0.77373 0.72610 0.73747 1.93453 1.62189 1.68782 1.73473 1.93470 1.80404 1.48057 1.75510 1.30010 1.19325 1.08786 1.10535 1.18662 1.02917 0.94910 0.85407 1.21568 0.93654 0.92619 1.56667 0.94662 1.26750 0.95535 1.06264 0.91512 1.70851 1.11125 1.28502 1.44266 0.83314 0.75303 0.72469 0.77783 1.19694 1.20865 1.19447 1.23134 0.98163 0.98388 1.02205 1.22763 0.92834 1.01618 1.01891 0.87726 0.93164 0.94273 0.89703 0.93734 0.87750 0.88488 0.81755 0.84697 0.71217 0.86119 0.83745 0.91686 0.90176 0.87622 0.88068 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -7.90 9.02 -148.98 -1.34 -9.25 16 3 C 0.04 0.91 6.28 71.98 0.45 1.36 16 4 C 0.11 3.11 6.09 86.38 0.53 3.64 16 5 N -0.98 -30.23 2.19 -519.85 -1.14 -31.37 16 6 C 0.13 3.10 5.69 85.63 0.49 3.59 16 7 C 0.46 12.47 8.39 71.24 0.60 13.07 16 8 O -0.55 -19.63 17.18 21.94 0.38 -19.25 16 9 O -0.51 -9.50 13.42 -51.44 -0.69 -10.19 16 10 S 2.62 108.98 5.01 -56.49 -0.28 108.70 16 11 O -0.99 -44.51 16.99 -127.65 -2.17 -46.68 16 12 O -0.98 -49.89 16.04 -127.65 -2.05 -51.94 16 13 C -0.55 -21.69 5.95 71.98 0.43 -21.26 16 14 C -0.02 -0.78 0.95 -52.93 -0.05 -0.83 16 15 C -0.61 -33.98 7.90 25.60 0.20 -33.78 16 16 H 0.04 2.09 7.82 -2.91 -0.02 2.07 16 17 C 0.00 0.15 5.39 84.65 0.46 0.61 16 18 N -0.91 -51.37 13.57 21.45 0.29 -51.08 16 19 Si 1.09 51.01 29.91 68.60 2.05 53.06 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 C -0.18 -7.52 9.95 30.62 0.30 -7.21 16 24 C -0.15 -6.38 8.74 30.62 0.27 -6.11 16 25 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.14 7.10 -2.39 -0.02 1.13 16 30 H 0.10 2.45 8.11 -2.39 -0.02 2.43 16 31 H 0.10 3.01 6.82 -2.39 -0.02 3.00 16 32 H 0.17 2.83 6.60 -2.39 -0.02 2.82 16 33 H 0.14 2.80 7.61 -2.39 -0.02 2.78 16 34 H 0.43 4.58 9.10 -74.06 -0.67 3.91 16 35 H 0.12 4.86 6.78 -2.39 -0.02 4.85 16 36 H 0.14 4.28 8.11 -2.39 -0.02 4.26 16 37 H 0.27 14.79 6.17 -92.70 -0.57 14.21 16 38 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 40 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 41 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -79.86 360.35 0.54 -79.32 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.57 Total: 23.99 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 4.92 Total: -45.33 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -0.85 Total: -82.45 kcal Atomic # 8 Polarization: -131.42 SS G_CDS: -5.87 Total: -137.30 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.05 Total: 53.06 kcal Atomic # 16 Polarization: 108.98 SS G_CDS: -0.28 Total: 108.70 kcal Total: -79.86 0.54 -79.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591350321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.470 kcal (2) G-P(sol) polarization free energy of solvation -79.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds