Wall clock time and date at job start Fri Apr 10 2020 14:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20824 * 120.00048 * 2 1 4 4 O 1.34235 * 120.00281 * 179.97438 * 2 1 3 5 5 C 1.45194 * 117.00385 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47339 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 5 4 8 8 S 1.81408 * 109.46799 * 180.02562 * 7 6 5 9 9 O 1.42102 * 110.54035 * 291.62208 * 8 7 6 10 10 O 1.42098 * 110.54418 * 68.37375 * 8 7 6 11 11 N 1.65603 * 104.44779 * 180.02562 * 8 7 6 12 12 C 1.47429 * 125.64303 * 269.69188 * 11 8 7 13 13 C 1.55130 * 104.72103 * 155.81891 * 12 11 8 14 14 C 1.55164 * 101.48653 * 37.28858 * 13 12 11 15 15 O 1.42902 * 110.86518 * 82.77080 * 14 13 12 16 16 C 1.50696 * 110.72067 * 205.97141 * 14 13 12 17 17 H 1.07998 * 120.00399 * 113.52892 * 16 14 13 18 18 C 1.37878 * 119.99900 * 293.52384 * 16 14 13 19 19 N 1.31518 * 120.00251 * 0.02562 * 18 16 14 20 20 Si 1.86807 * 119.99925 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47109 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46949 * 120.00104 * 20 18 16 23 23 H 1.48497 * 109.46992 * 239.99908 * 20 18 16 24 24 C 1.47015 * 125.65207 * 89.99698 * 11 8 7 25 25 H 1.09003 * 109.47224 * 269.99962 * 1 2 3 26 26 H 1.09003 * 109.46972 * 29.99744 * 1 2 3 27 27 H 1.08998 * 109.47017 * 150.00218 * 1 2 3 28 28 H 1.09002 * 109.47239 * 59.99675 * 5 4 2 29 29 H 1.08998 * 109.46869 * 300.00400 * 5 4 2 30 30 H 1.09002 * 109.47153 * 59.99705 * 6 5 4 31 31 H 1.09001 * 109.46832 * 299.99896 * 6 5 4 32 32 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 33 33 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 34 34 H 1.09003 * 110.36613 * 274.74352 * 12 11 8 35 35 H 1.08996 * 110.37028 * 37.06991 * 12 11 8 36 36 H 1.09002 * 111.18815 * 279.18852 * 13 12 11 37 37 H 1.08998 * 110.94110 * 155.28736 * 13 12 11 38 38 H 0.96695 * 114.00589 * 66.39120 * 15 14 13 39 39 H 0.96999 * 120.00001 * 180.02562 * 19 18 16 40 40 H 1.09004 * 109.88435 * 300.43993 * 24 11 8 41 41 H 1.08998 * 109.88000 * 61.44706 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1782 -1.1625 0.0005 5 6 3.6281 -1.0865 0.0011 6 6 4.2129 -2.5003 0.0023 7 6 5.7408 -2.4202 0.0035 8 16 6.4342 -4.0965 0.0041 9 8 6.1706 -4.7446 1.2410 10 8 6.1726 -4.7448 -1.2330 11 7 8.0740 -3.8654 0.0061 12 6 8.9271 -3.7518 -1.1909 13 6 10.1693 -2.9534 -0.7154 14 6 10.3679 -3.5155 0.7172 15 8 11.0925 -4.7468 0.6849 16 6 11.0694 -2.5090 1.5923 17 1 10.5480 -2.0614 2.4254 18 6 12.3770 -2.1596 1.3294 19 7 13.0120 -2.7044 0.3146 20 14 13.2469 -0.9125 2.4146 21 1 12.3207 -0.4525 3.4803 22 1 14.4401 -1.5427 3.0345 23 1 13.6715 0.2486 1.5920 24 6 8.9210 -3.7459 1.2018 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 3.9638 -0.5541 0.8910 29 1 3.9644 -0.5545 -0.8889 30 1 3.8773 -3.0331 -0.8875 31 1 3.8766 -3.0318 0.8925 32 1 6.0775 -1.8885 -0.8865 33 1 6.0761 -1.8876 0.8934 34 1 9.2208 -4.7408 -1.5427 35 1 8.4055 -3.2076 -1.9782 36 1 9.9638 -1.8833 -0.6901 37 1 11.0342 -3.1684 -1.3429 38 1 12.0080 -4.6567 0.3870 39 1 13.9320 -2.4588 0.1299 40 1 8.5931 -2.8996 1.8054 41 1 8.8657 -4.6629 1.7884 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828045111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:42 Heat of formation + Delta-G solvation = -212.182784 kcal Electronic energy + Delta-G solvation = -25435.347078 eV Core-core repulsion = 21442.548133 eV Total energy + Delta-G solvation = -3992.798945 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.71069 -38.08705 -37.11283 -36.91817 -35.76478 -34.43460 -34.34030 -32.16930 -30.76974 -29.22983 -28.32645 -27.25921 -24.88644 -22.52962 -21.56890 -21.48533 -19.82386 -18.63911 -17.97121 -17.56305 -17.16904 -17.12193 -16.53121 -16.02128 -15.95109 -15.12159 -14.99956 -14.53608 -14.13537 -13.65543 -13.61068 -13.53305 -13.29971 -13.02947 -12.82365 -12.66185 -12.22145 -12.06894 -12.04178 -11.92844 -11.87311 -11.72719 -11.66808 -11.37236 -11.12075 -10.97322 -10.89800 -10.84966 -10.66170 -10.50434 -10.42928 -10.16112 -9.39405 -8.70272 -8.44462 -8.19756 -6.32797 -4.40621 0.35368 1.84562 2.32131 2.91325 3.15598 3.25239 3.28737 3.94689 4.16660 4.22888 4.28106 4.39927 4.49894 4.62184 4.80300 4.84196 4.91769 4.97630 5.08634 5.22091 5.31662 5.34445 5.47092 5.62344 5.77878 5.88991 5.99222 6.12425 6.19689 6.44259 6.56782 6.74841 6.90117 6.98274 7.30264 7.33795 7.38616 7.70479 7.97687 8.61500 9.28525 9.46071 10.74838 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.016184 B = 0.003049 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.720041 B = 9181.502791 C =10347.026671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.459 3.541 3 O -0.515 6.515 4 O -0.359 6.359 5 C 0.074 3.926 6 C -0.110 4.110 7 C -0.641 4.641 8 S 2.630 3.370 9 O -0.953 6.953 10 O -0.956 6.956 11 N -1.007 6.007 12 C 0.121 3.879 13 C -0.136 4.136 14 C 0.250 3.750 15 O -0.586 6.586 16 C -0.536 4.536 17 H 0.065 0.935 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.283 1.283 24 C 0.134 3.866 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.386 0.614 39 H 0.269 0.731 40 H 0.067 0.933 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.540 3.648 -2.874 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.302 3.698 3 O -0.403 6.403 4 O -0.276 6.276 5 C 0.000 4.000 6 C -0.149 4.149 7 C -0.768 4.768 8 S 2.723 3.277 9 O -0.943 6.943 10 O -0.947 6.947 11 N -0.846 5.846 12 C -0.004 4.004 13 C -0.176 4.176 14 C 0.209 3.791 15 O -0.396 6.396 16 C -0.575 4.575 17 H 0.083 0.917 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.209 1.209 24 C 0.010 3.990 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.238 0.762 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.255 2.867 -2.750 19.660 hybrid contribution 1.349 1.916 0.290 2.361 sum -17.906 4.783 -2.460 18.696 Atomic orbital electron populations 1.21623 0.86952 1.05911 1.05886 1.23875 0.92205 0.81535 0.72173 1.90715 1.70965 1.33150 1.45442 1.86478 1.22365 1.34991 1.83756 1.23047 0.75761 0.97685 1.03533 1.21195 0.91030 0.97406 1.05272 1.30791 1.04767 1.28876 1.12332 1.04379 0.72528 0.76653 0.74152 1.93582 1.84085 1.71383 1.45249 1.93572 1.84211 1.71454 1.45441 1.58463 1.22455 1.88666 1.15043 1.22158 0.92212 1.00542 0.85442 1.23372 0.95229 0.98609 1.00362 1.19434 0.86179 0.82800 0.90705 1.86102 1.29890 1.32978 1.90617 1.21609 0.97912 1.23748 1.14183 0.91666 1.25005 0.97198 0.96034 0.94883 1.69588 1.12210 1.43685 1.28125 0.86362 0.79517 0.80676 0.80384 1.19626 1.20751 1.20878 1.21868 0.91241 1.00726 0.85199 0.87673 0.87926 0.88662 0.90421 0.90479 0.89126 0.89053 0.84658 0.84434 0.91652 0.92466 0.91542 0.89818 0.76229 0.92121 0.91521 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.41 36.00 0.37 -0.31 16 2 C 0.46 4.40 8.07 36.00 0.29 4.69 16 3 O -0.51 -6.79 16.85 -18.75 -0.32 -7.10 16 4 O -0.36 -3.62 10.22 -39.27 -0.40 -4.02 16 5 C 0.07 0.75 5.47 37.16 0.20 0.96 16 6 C -0.11 -1.11 5.60 -26.73 -0.15 -1.26 16 7 C -0.64 -7.01 6.18 37.16 0.23 -6.78 16 8 S 2.63 40.67 5.65 -107.50 -0.61 40.06 16 9 O -0.95 -17.35 17.60 -57.54 -1.01 -18.36 16 10 O -0.96 -16.78 17.60 -57.54 -1.01 -17.79 16 11 N -1.01 -18.06 3.62 -111.29 -0.40 -18.46 16 12 C 0.12 2.19 6.89 -2.41 -0.02 2.17 16 13 C -0.14 -2.83 5.69 -24.46 -0.14 -2.97 16 14 C 0.25 5.83 0.85 -89.94 -0.08 5.76 16 15 O -0.59 -14.66 13.09 -35.23 -0.46 -15.12 16 16 C -0.54 -13.41 8.21 -34.44 -0.28 -13.69 16 17 H 0.07 1.61 7.53 -52.49 -0.40 1.21 16 18 C 0.07 1.78 5.28 -17.82 -0.09 1.68 16 19 N -0.90 -22.57 10.70 55.43 0.59 -21.97 16 20 Si 0.90 19.68 29.54 -169.99 -5.02 14.66 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 24 C 0.13 2.76 6.24 -3.07 -0.02 2.74 16 25 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.14 1.26 8.14 -51.92 -0.42 0.84 16 33 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 37 H 0.08 1.84 7.77 -51.93 -0.40 1.43 16 38 H 0.39 9.75 6.98 45.56 0.32 10.07 16 39 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 40 H 0.07 1.25 7.63 -51.93 -0.40 0.85 16 41 H 0.07 1.45 8.07 -51.93 -0.42 1.03 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -32.36 358.97 -8.41 -40.77 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.50 Total: 8.92 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 0.32 Total: -7.00 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.19 Total: -40.43 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: -3.20 Total: -62.39 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 40.67 SS G_CDS: -0.61 Total: 40.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.36 -8.41 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828045111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.413 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds