Wall clock time and date at job start Fri Apr 10 2020 14:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99762 * 2 1 4 4 C 1.52997 * 109.46855 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46990 * 174.99946 * 4 3 2 6 6 N 1.46497 * 109.47236 * 294.99967 * 4 3 2 7 7 S 1.65606 * 119.99924 * 265.00340 * 6 4 3 8 8 O 1.42096 * 104.27583 * 308.92447 * 7 6 4 9 9 O 1.42098 * 104.27482 * 181.07057 * 7 6 4 10 10 C 1.81397 * 104.44890 * 64.99729 * 7 6 4 11 11 C 1.53001 * 109.46618 * 174.82998 * 10 7 6 12 12 C 1.50696 * 115.55343 * 295.19164 * 11 10 7 13 13 H 1.07992 * 120.00409 * 95.17017 * 12 11 10 14 14 C 1.37888 * 120.00019 * 274.89386 * 12 11 10 15 15 N 1.31513 * 119.99665 * 6.44959 * 14 12 11 16 16 Si 1.86794 * 120.00009 * 186.45434 * 14 12 11 17 17 H 1.48498 * 109.47490 * 59.99524 * 16 14 12 18 18 H 1.48495 * 109.47293 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46890 * 299.99890 * 16 14 12 20 20 C 1.53004 * 117.50082 * 80.86870 * 11 10 7 21 21 C 1.53007 * 117.49579 * 149.52686 * 11 10 7 22 22 C 1.50700 * 109.47203 * 54.99831 * 4 3 2 23 23 O 1.20827 * 120.00122 * 239.99792 * 22 4 3 24 24 O 1.34231 * 119.99758 * 60.00058 * 22 4 3 25 25 C 1.45199 * 116.99938 * 179.97438 * 24 22 4 26 26 H 1.08998 * 109.47195 * 300.00133 * 1 2 3 27 27 H 1.09004 * 109.47302 * 59.99929 * 1 2 3 28 28 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46889 * 59.99844 * 3 2 1 30 30 H 1.08998 * 109.46877 * 299.99748 * 3 2 1 31 31 H 0.96998 * 120.00343 * 84.99817 * 6 4 3 32 32 H 1.08997 * 109.47016 * 54.83541 * 10 7 6 33 33 H 1.08997 * 109.47040 * 294.82655 * 10 7 6 34 34 H 0.97004 * 119.99740 * 185.03234 * 15 14 12 35 35 H 1.09001 * 117.49692 * 215.00018 * 20 11 10 36 36 H 1.09002 * 117.49683 * 0.02562 * 20 11 10 37 37 H 1.09000 * 117.50027 * 359.97053 * 21 11 10 38 38 H 1.08996 * 117.49895 * 144.97637 * 21 11 10 39 39 H 1.09003 * 109.47377 * 179.97438 * 25 24 22 40 40 H 1.08999 * 109.47491 * 300.00010 * 25 24 22 41 41 H 1.08998 * 109.46808 * 59.99717 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1766 -0.0902 6 7 3.9766 0.5640 1.2508 7 16 4.4473 1.5122 2.5244 8 8 5.3961 2.4083 1.9622 9 8 4.8240 0.5838 3.5320 10 6 2.9415 2.4005 3.0081 11 6 3.2171 3.2225 4.2688 12 6 3.5410 2.4259 5.5063 13 1 4.5704 2.2420 5.7761 14 6 2.5231 1.9366 6.2973 15 7 1.2727 2.0544 5.9072 16 14 2.9201 1.1065 7.9228 17 1 3.6327 2.0638 8.8066 18 1 1.6602 0.6714 8.5773 19 1 3.7835 -0.0765 7.6766 20 6 3.9176 4.5715 4.0935 21 6 2.4300 4.5219 4.4510 22 6 3.9713 0.3328 -1.1648 23 8 4.5874 -0.6880 -0.9692 24 8 3.6752 0.7082 -2.4191 25 6 4.1272 -0.1605 -3.4912 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.9931 -0.4023 1.3336 32 1 2.1454 1.6836 3.2087 33 1 2.6366 3.0656 2.2002 34 1 0.5530 1.7767 6.4953 35 1 4.6128 4.8826 4.8733 36 1 4.1817 4.8735 3.0800 37 1 1.7162 4.7913 3.6726 38 1 2.1462 4.8002 5.4659 39 1 3.8225 0.2576 -4.4506 40 1 5.2136 -0.2426 -3.4588 41 1 3.6844 -1.1490 -3.3690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363835168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:05 Heat of formation + Delta-G solvation = -170.589645 kcal Electronic energy + Delta-G solvation = -26775.267995 eV Core-core repulsion = 22784.272663 eV Total energy + Delta-G solvation = -3990.995332 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.67583 -38.14463 -36.81593 -36.72066 -36.33592 -35.18563 -34.88579 -32.04099 -29.81906 -28.35787 -27.80107 -26.33877 -25.48613 -24.04818 -21.28365 -21.00073 -19.87880 -18.91596 -17.97139 -17.39381 -17.00073 -16.45790 -16.43739 -16.28571 -15.68922 -15.62008 -15.04541 -14.77692 -14.58419 -14.23694 -13.89083 -13.55202 -13.23178 -13.10998 -12.62752 -12.41218 -12.17795 -11.99181 -11.84924 -11.57209 -11.43624 -11.35403 -11.23146 -11.04220 -10.93547 -10.89448 -10.62755 -10.59530 -10.50865 -10.15745 -9.87561 -9.74026 -9.44701 -8.99335 -8.54790 -8.15941 -6.15044 -4.23956 0.92474 2.10745 2.48466 3.26304 3.33954 3.36287 3.44041 3.54799 4.38994 4.44297 4.45698 4.70306 4.82305 4.92351 4.94026 5.02989 5.07436 5.12384 5.16071 5.24549 5.28980 5.33881 5.41337 5.61932 5.64079 5.68666 5.96082 6.17975 6.20434 6.30308 6.54088 6.65366 6.92909 6.95372 7.16970 7.21397 7.34639 7.63065 7.81451 8.17620 8.82447 9.47349 10.93372 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.004410 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.922181 B = 6347.653923 C = 6633.185240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.038 3.962 4 C 0.167 3.833 5 H 0.142 0.858 6 N -1.109 6.109 7 S 2.602 3.398 8 O -0.976 6.976 9 O -0.932 6.932 10 C -0.555 4.555 11 C 0.042 3.958 12 C -0.508 4.508 13 H 0.070 0.930 14 C 0.081 3.919 15 N -0.877 5.877 16 Si 0.890 3.110 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.269 1.269 20 C -0.214 4.214 21 C -0.137 4.137 22 C 0.472 3.528 23 O -0.490 6.490 24 O -0.358 6.358 25 C 0.037 3.963 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.425 0.575 32 H 0.139 0.861 33 H 0.098 0.902 34 H 0.263 0.737 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 -0.407 -16.768 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.041 4.041 4 C 0.056 3.944 5 H 0.159 0.841 6 N -0.867 5.867 7 S 2.699 3.301 8 O -0.966 6.966 9 O -0.922 6.922 10 C -0.688 4.688 11 C 0.039 3.961 12 C -0.545 4.545 13 H 0.088 0.912 14 C -0.124 4.124 15 N -0.512 5.512 16 Si 0.717 3.283 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.194 1.194 20 C -0.251 4.251 21 C -0.176 4.176 22 C 0.312 3.688 23 O -0.375 6.375 24 O -0.274 6.274 25 C -0.057 4.057 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.260 0.740 32 H 0.157 0.843 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.620 -0.836 -16.407 16.508 hybrid contribution -0.873 -0.660 0.629 1.262 sum -2.493 -1.496 -15.778 16.043 Atomic orbital electron populations 1.22790 0.80382 1.03005 1.00399 1.87904 1.20274 1.26524 1.95513 1.23255 0.91193 0.86602 1.03035 1.20308 0.94181 0.97447 0.82441 0.84058 1.56006 1.84752 1.21312 1.24602 1.05429 0.77532 0.74787 0.72351 1.93506 1.58512 1.66825 1.77721 1.93594 1.81454 1.60988 1.56177 1.30117 1.19424 1.12494 1.06744 1.18306 1.00797 0.85679 0.91282 1.20511 0.93610 1.33477 1.06932 0.91185 1.24919 0.94872 0.94492 0.98100 1.69992 0.98642 1.46728 1.35860 0.86668 0.77835 0.80525 0.83309 1.20004 1.21235 1.19378 1.23264 0.96540 1.04568 1.00716 1.22531 0.91391 1.02868 1.00816 1.23415 0.76270 0.85164 0.83947 1.90655 1.36870 1.24695 1.85322 1.86463 1.73106 1.52098 1.15718 1.23266 1.00492 0.94395 0.87563 0.93193 0.94039 0.89550 0.90329 0.90661 0.73955 0.84331 0.88354 0.92787 0.89400 0.90599 0.91505 0.89480 0.88066 0.91833 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -5.03 10.13 -35.23 -0.36 -5.39 16 3 C 0.04 0.44 5.69 37.16 0.21 0.65 16 4 C 0.17 2.26 3.12 -69.09 -0.22 2.05 16 5 H 0.14 1.63 7.48 -51.93 -0.39 1.24 16 6 N -1.11 -18.24 5.10 -5.89 -0.03 -18.27 16 7 S 2.60 52.11 5.32 -107.50 -0.57 51.54 16 8 O -0.98 -20.60 17.39 -57.54 -1.00 -21.60 16 9 O -0.93 -22.54 17.13 -57.54 -0.99 -23.53 16 10 C -0.55 -10.93 4.78 37.16 0.18 -10.76 16 11 C 0.04 0.97 1.34 -155.66 -0.21 0.77 16 12 C -0.51 -13.60 7.68 -34.44 -0.26 -13.87 16 13 H 0.07 1.94 7.82 -52.49 -0.41 1.52 16 14 C 0.08 2.16 5.39 -17.82 -0.10 2.07 16 15 N -0.88 -23.50 12.93 55.43 0.72 -22.78 16 16 Si 0.89 21.25 29.55 -169.99 -5.02 16.22 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.21 -4.45 9.96 -26.69 -0.27 -4.72 16 21 C -0.14 -2.95 9.44 -26.69 -0.25 -3.20 16 22 C 0.47 6.69 6.84 36.01 0.25 6.93 16 23 O -0.49 -8.23 15.74 -18.75 -0.30 -8.53 16 24 O -0.36 -4.13 10.49 -39.26 -0.41 -4.54 16 25 C 0.04 0.31 10.56 101.05 1.07 1.38 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.90 5.90 -51.93 -0.31 0.59 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.42 7.02 8.18 -34.47 -0.28 6.74 16 32 H 0.14 2.84 8.14 -51.93 -0.42 2.42 16 33 H 0.10 1.54 7.17 -51.93 -0.37 1.16 16 34 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 35 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 41 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -34.29 363.44 -6.94 -41.23 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.97 Total: 7.44 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 1.51 Total: -17.28 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.69 Total: -41.05 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -3.05 Total: -63.58 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 52.11 SS G_CDS: -0.57 Total: 51.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.29 -6.94 -41.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363835168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.364 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds