Wall clock time and date at job start Fri Apr 10 2020 14:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99762 * 2 1 4 4 C 1.52997 * 109.46855 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46990 * 174.99946 * 4 3 2 6 6 N 1.46497 * 109.47236 * 294.99967 * 4 3 2 7 7 S 1.65606 * 119.99924 * 265.00340 * 6 4 3 8 8 O 1.42096 * 104.27583 * 308.92447 * 7 6 4 9 9 O 1.42098 * 104.27482 * 181.07057 * 7 6 4 10 10 C 1.81397 * 104.44890 * 64.99729 * 7 6 4 11 11 C 1.53001 * 109.46618 * 174.82998 * 10 7 6 12 12 C 1.50696 * 115.55343 * 295.19164 * 11 10 7 13 13 H 1.07992 * 120.00409 * 95.17017 * 12 11 10 14 14 C 1.37888 * 120.00019 * 274.89386 * 12 11 10 15 15 N 1.31513 * 119.99665 * 6.44959 * 14 12 11 16 16 Si 1.86794 * 120.00009 * 186.45434 * 14 12 11 17 17 H 1.48498 * 109.47490 * 59.99524 * 16 14 12 18 18 H 1.48495 * 109.47293 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46890 * 299.99890 * 16 14 12 20 20 C 1.53004 * 117.50082 * 80.86870 * 11 10 7 21 21 C 1.53007 * 117.49579 * 149.52686 * 11 10 7 22 22 C 1.50700 * 109.47203 * 54.99831 * 4 3 2 23 23 O 1.20827 * 120.00122 * 239.99792 * 22 4 3 24 24 O 1.34231 * 119.99758 * 60.00058 * 22 4 3 25 25 C 1.45199 * 116.99938 * 179.97438 * 24 22 4 26 26 H 1.08998 * 109.47195 * 300.00133 * 1 2 3 27 27 H 1.09004 * 109.47302 * 59.99929 * 1 2 3 28 28 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46889 * 59.99844 * 3 2 1 30 30 H 1.08998 * 109.46877 * 299.99748 * 3 2 1 31 31 H 0.96998 * 120.00343 * 84.99817 * 6 4 3 32 32 H 1.08997 * 109.47016 * 54.83541 * 10 7 6 33 33 H 1.08997 * 109.47040 * 294.82655 * 10 7 6 34 34 H 0.97004 * 119.99740 * 185.03234 * 15 14 12 35 35 H 1.09001 * 117.49692 * 215.00018 * 20 11 10 36 36 H 1.09002 * 117.49683 * 0.02562 * 20 11 10 37 37 H 1.09000 * 117.50027 * 359.97053 * 21 11 10 38 38 H 1.08996 * 117.49895 * 144.97637 * 21 11 10 39 39 H 1.09003 * 109.47377 * 179.97438 * 25 24 22 40 40 H 1.08999 * 109.47491 * 300.00010 * 25 24 22 41 41 H 1.08998 * 109.46808 * 59.99717 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1766 -0.0902 6 7 3.9766 0.5640 1.2508 7 16 4.4473 1.5122 2.5244 8 8 5.3961 2.4083 1.9622 9 8 4.8240 0.5838 3.5320 10 6 2.9415 2.4005 3.0081 11 6 3.2171 3.2225 4.2688 12 6 3.5410 2.4259 5.5063 13 1 4.5704 2.2420 5.7761 14 6 2.5231 1.9366 6.2973 15 7 1.2727 2.0544 5.9072 16 14 2.9201 1.1065 7.9228 17 1 3.6327 2.0638 8.8066 18 1 1.6602 0.6714 8.5773 19 1 3.7835 -0.0765 7.6766 20 6 3.9176 4.5715 4.0935 21 6 2.4300 4.5219 4.4510 22 6 3.9713 0.3328 -1.1648 23 8 4.5874 -0.6880 -0.9692 24 8 3.6752 0.7082 -2.4191 25 6 4.1272 -0.1605 -3.4912 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.9931 -0.4023 1.3336 32 1 2.1454 1.6836 3.2087 33 1 2.6366 3.0656 2.2002 34 1 0.5530 1.7767 6.4953 35 1 4.6128 4.8826 4.8733 36 1 4.1817 4.8735 3.0800 37 1 1.7162 4.7913 3.6726 38 1 2.1462 4.8002 5.4659 39 1 3.8225 0.2576 -4.4506 40 1 5.2136 -0.2426 -3.4588 41 1 3.6844 -1.1490 -3.3690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363835168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:05 Heat of formation + Delta-G solvation = -196.798664 kcal Electronic energy + Delta-G solvation = -26776.404503 eV Core-core repulsion = 22784.272663 eV Total energy + Delta-G solvation = -3992.131840 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.70421 -39.06646 -38.53548 -38.02651 -37.70199 -36.86362 -36.05771 -34.03462 -30.88796 -29.92266 -28.59563 -27.45757 -27.15970 -25.00494 -22.94550 -22.04299 -21.53568 -20.42918 -19.26743 -18.54448 -18.32638 -18.05241 -17.54920 -17.30754 -16.91132 -16.69203 -16.59265 -16.41001 -16.00563 -15.58333 -15.28517 -14.89217 -14.48059 -14.04040 -13.78822 -13.66976 -13.58532 -13.28858 -13.17793 -13.03025 -12.95461 -12.93717 -12.86312 -12.81671 -12.42152 -12.28028 -12.18532 -11.88430 -11.81651 -11.68545 -11.56434 -10.85191 -10.76193 -10.61100 -10.49294 -9.88095 -8.16875 -6.28197 -0.63036 1.05195 1.40039 1.43289 1.47971 1.50093 1.92937 2.43240 2.70207 2.90856 3.11620 3.32499 3.43063 3.48949 3.75525 3.88787 4.02315 4.17285 4.30835 4.33369 4.35339 4.44098 4.54535 4.56812 4.61281 4.63829 4.69622 4.75152 4.86956 4.91744 5.02905 5.24626 5.27015 5.50123 5.65308 5.76428 5.87045 6.14492 6.26347 6.60898 6.77247 7.43385 8.90437 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.004410 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.922181 B = 6347.653923 C = 6633.185240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.036 3.964 4 C 0.154 3.846 5 H 0.165 0.835 6 N -1.105 6.105 7 S 2.617 3.383 8 O -0.989 6.989 9 O -0.984 6.984 10 C -0.544 4.544 11 C 0.005 3.995 12 C -0.525 4.525 13 H 0.046 0.954 14 C 0.044 3.956 15 N -0.889 5.889 16 Si 0.928 3.072 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.282 1.282 20 C -0.201 4.201 21 C -0.130 4.130 22 C 0.474 3.526 23 O -0.526 6.526 24 O -0.351 6.351 25 C 0.028 3.972 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.423 0.577 32 H 0.130 0.870 33 H 0.145 0.855 34 H 0.264 0.736 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.139 0.861 40 H 0.060 0.940 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 0.813 -18.874 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.042 4.042 4 C 0.044 3.956 5 H 0.182 0.818 6 N -0.864 5.864 7 S 2.715 3.285 8 O -0.979 6.979 9 O -0.975 6.975 10 C -0.678 4.678 11 C 0.003 3.997 12 C -0.563 4.563 13 H 0.064 0.936 14 C -0.158 4.158 15 N -0.526 5.526 16 Si 0.753 3.247 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.208 1.208 20 C -0.239 4.239 21 C -0.169 4.169 22 C 0.316 3.684 23 O -0.414 6.414 24 O -0.266 6.266 25 C -0.065 4.065 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.129 0.871 31 H 0.259 0.741 32 H 0.148 0.852 33 H 0.163 0.837 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.157 0.843 40 H 0.079 0.921 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.768 0.407 -18.526 18.736 hybrid contribution -0.507 -1.037 1.165 1.640 sum -3.276 -0.630 -17.361 17.679 Atomic orbital electron populations 1.22941 0.79039 1.03746 1.01317 1.87875 1.21829 1.27510 1.95749 1.23370 0.89452 0.86506 1.04875 1.20750 0.95941 0.98011 0.80861 0.81803 1.55596 1.84847 1.20817 1.25156 1.04737 0.77564 0.74232 0.71972 1.93476 1.59402 1.67177 1.77842 1.93523 1.82682 1.62599 1.58676 1.29932 1.18461 1.12662 1.06708 1.18420 1.03190 0.86557 0.91520 1.20681 0.92558 1.34120 1.08915 0.93554 1.25400 0.95100 0.95176 1.00158 1.70016 0.98743 1.47434 1.36376 0.86085 0.77863 0.79400 0.81308 1.19418 1.19990 1.20775 1.23334 0.96039 1.02340 1.02150 1.22502 0.92430 1.01377 1.00615 1.23518 0.75454 0.84551 0.84904 1.90645 1.38633 1.26246 1.85916 1.86451 1.72628 1.52360 1.15174 1.23605 1.00513 0.94399 0.87978 0.93598 0.91708 0.89088 0.89984 0.87138 0.74107 0.85219 0.83701 0.92701 0.90075 0.87654 0.88701 0.91660 0.84281 0.92078 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -9.98 10.13 -148.98 -1.51 -11.48 16 3 C 0.04 0.73 5.69 71.98 0.41 1.14 16 4 C 0.15 3.83 3.12 44.24 0.14 3.97 16 5 H 0.16 3.27 7.48 -2.39 -0.02 3.25 16 6 N -1.11 -35.56 5.10 -172.53 -0.88 -36.44 16 7 S 2.62 103.57 5.32 -56.49 -0.30 103.27 16 8 O -0.99 -40.57 17.39 -127.65 -2.22 -42.79 16 9 O -0.98 -48.97 17.13 -127.65 -2.19 -51.16 16 10 C -0.54 -20.49 4.78 71.98 0.34 -20.14 16 11 C 0.01 0.25 1.34 -52.92 -0.07 0.18 16 12 C -0.53 -28.47 7.68 25.60 0.20 -28.27 16 13 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 14 C 0.04 2.39 5.39 84.66 0.46 2.85 16 15 N -0.89 -47.47 12.93 21.45 0.28 -47.19 16 16 Si 0.93 43.91 29.55 68.60 2.03 45.94 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 20 C -0.20 -8.00 9.96 30.62 0.30 -7.69 16 21 C -0.13 -5.36 9.44 30.62 0.29 -5.07 16 22 C 0.47 12.68 6.84 71.24 0.49 13.17 16 23 O -0.53 -17.47 15.74 21.96 0.35 -17.13 16 24 O -0.35 -7.20 10.49 -51.43 -0.54 -7.74 16 25 C 0.03 0.42 10.56 113.37 1.20 1.61 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.60 5.90 -2.39 -0.01 1.59 16 30 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.42 14.16 8.18 -96.75 -0.79 13.36 16 32 H 0.13 5.19 8.14 -2.39 -0.02 5.17 16 33 H 0.15 3.96 7.17 -2.39 -0.02 3.95 16 34 H 0.26 13.51 8.32 -92.71 -0.77 12.74 16 35 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 37 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 41 H 0.06 0.95 8.13 -2.39 -0.02 0.94 16 Total: -1.00 -74.84 363.44 0.27 -74.57 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.25 Total: 26.69 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 5.00 Total: -36.55 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -0.60 Total: -83.63 kcal Atomic # 8 Polarization: -124.19 SS G_CDS: -6.11 Total: -130.30 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 103.57 SS G_CDS: -0.30 Total: 103.27 kcal Total: -74.84 0.27 -74.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363835168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.226 kcal (2) G-P(sol) polarization free energy of solvation -74.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds