Wall clock time and date at job start Fri Apr 10 2020 14:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99716 * 2 1 4 4 C 1.52998 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47046 * 184.99974 * 4 3 2 6 6 N 1.46502 * 109.47154 * 65.00282 * 4 3 2 7 7 S 1.65594 * 120.00385 * 95.00274 * 6 4 3 8 8 O 1.42110 * 104.27223 * 308.92342 * 7 6 4 9 9 O 1.42093 * 104.27844 * 181.07259 * 7 6 4 10 10 C 1.81399 * 104.45204 * 64.99536 * 7 6 4 11 11 C 1.52993 * 109.46960 * 181.21588 * 10 7 6 12 12 C 1.50701 * 115.55359 * 294.68597 * 11 10 7 13 13 H 1.08004 * 119.99636 * 95.18896 * 12 11 10 14 14 C 1.37879 * 120.00110 * 274.91686 * 12 11 10 15 15 N 1.31511 * 119.99884 * 6.46959 * 14 12 11 16 16 Si 1.86799 * 120.00195 * 186.46557 * 14 12 11 17 17 H 1.48501 * 109.46790 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47034 * 119.99832 * 16 14 12 19 19 H 1.48498 * 109.47498 * 240.00357 * 16 14 12 20 20 C 1.53001 * 117.50088 * 80.36017 * 11 10 7 21 21 C 1.53005 * 117.50005 * 149.01851 * 11 10 7 22 22 C 1.50701 * 109.47148 * 304.99819 * 4 3 2 23 23 O 1.20822 * 120.00168 * 119.99848 * 22 4 3 24 24 O 1.34227 * 120.00030 * 300.00246 * 22 4 3 25 25 C 1.45203 * 116.99867 * 179.97438 * 24 22 4 26 26 H 1.08999 * 109.47883 * 299.99784 * 1 2 3 27 27 H 1.08997 * 109.47503 * 60.00389 * 1 2 3 28 28 H 1.09006 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47487 * 59.99869 * 3 2 1 30 30 H 1.09000 * 109.46971 * 300.00146 * 3 2 1 31 31 H 0.97003 * 119.99121 * 274.99899 * 6 4 3 32 32 H 1.09002 * 109.46845 * 61.21822 * 10 7 6 33 33 H 1.08998 * 109.46861 * 301.21952 * 10 7 6 34 34 H 0.96996 * 120.00195 * 185.03473 * 15 14 12 35 35 H 1.08995 * 117.50023 * 215.00105 * 20 11 10 36 36 H 1.09001 * 117.49424 * 0.02562 * 20 11 10 37 37 H 1.09004 * 117.49226 * 359.97438 * 21 11 10 38 38 H 1.08994 * 117.50110 * 144.97326 * 21 11 10 39 39 H 1.08999 * 109.46757 * 179.97438 * 25 24 22 40 40 H 1.08990 * 109.47231 * 299.99941 * 25 24 22 41 41 H 1.09001 * 109.47118 * 60.00353 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 1 3.9783 2.1766 0.0889 6 7 3.9756 0.5646 -1.2528 7 16 4.4453 1.5131 -2.5263 8 8 3.3776 2.4370 -2.6875 9 8 4.7727 0.5858 -3.5519 10 6 5.9361 2.3602 -1.9342 11 6 6.4549 3.3007 -3.0237 12 6 6.9470 2.6307 -4.2806 13 1 6.2856 2.5181 -5.1270 14 6 8.2433 2.1663 -4.3521 15 7 9.0109 2.1922 -3.2846 16 14 8.9093 1.5005 -5.9654 17 1 7.8542 1.5809 -7.0072 18 1 10.0829 2.3068 -6.3868 19 1 9.3203 0.0850 -5.7847 20 6 5.7670 4.6595 -3.1704 21 6 7.1742 4.5741 -2.5740 22 6 3.9723 0.3325 1.1629 23 8 4.5882 -0.6882 0.9665 24 8 3.6772 0.7074 2.4175 25 6 4.1291 -0.1622 3.4889 26 1 -0.3635 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6885 1.8465 0.8900 30 1 1.6884 1.8464 -0.8900 31 1 3.9920 -0.4017 -1.3357 32 1 6.7025 1.6227 -1.6957 33 1 5.6959 2.9365 -1.0408 34 1 9.9435 1.9344 -3.3514 35 1 5.6703 5.0686 -4.1760 36 1 4.9451 4.8834 -2.4904 37 1 7.2773 4.7419 -1.5019 38 1 8.0034 4.9269 -3.1870 39 1 3.8260 0.2561 4.4487 40 1 3.6856 -1.1502 3.3665 41 1 5.2155 -0.2450 3.4559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363835177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:08 Heat of formation + Delta-G solvation = -197.437801 kcal Electronic energy + Delta-G solvation = -26620.727717 eV Core-core repulsion = 22628.568162 eV Total energy + Delta-G solvation = -3992.159555 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69976 -39.05560 -38.55642 -37.97856 -37.70967 -36.84919 -36.05170 -34.07166 -30.88947 -29.89263 -28.60536 -27.48763 -27.17246 -25.01024 -22.95489 -22.03510 -21.60740 -20.39939 -19.25786 -18.48158 -18.35217 -18.07477 -17.54205 -17.29321 -16.87537 -16.78831 -16.50393 -16.42939 -15.99868 -15.59751 -15.32905 -14.87656 -14.49641 -14.07958 -13.78954 -13.68221 -13.65859 -13.28450 -13.17209 -12.95495 -12.94209 -12.92586 -12.84536 -12.83003 -12.44628 -12.28604 -12.21582 -11.92683 -11.80853 -11.70289 -11.54022 -10.87702 -10.76192 -10.62385 -10.52628 -9.88750 -8.19995 -6.33229 -0.62282 1.05541 1.36035 1.41145 1.43912 1.51338 1.96067 2.40494 2.71002 2.91141 3.08415 3.31285 3.41706 3.48734 3.75350 3.83507 3.99177 4.19393 4.31888 4.34512 4.35947 4.51297 4.53415 4.55985 4.60531 4.65647 4.70299 4.75667 4.85290 4.88473 5.02495 5.25207 5.26103 5.48758 5.63749 5.73057 5.85835 6.14676 6.22866 6.61628 6.74353 7.39692 8.87939 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.016830 B = 0.004288 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.249560 B = 6528.916827 C = 6879.633594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.045 3.955 4 C 0.158 3.842 5 H 0.163 0.837 6 N -1.104 6.104 7 S 2.626 3.374 8 O -0.973 6.973 9 O -0.987 6.987 10 C -0.555 4.555 11 C 0.003 3.997 12 C -0.527 4.527 13 H 0.050 0.950 14 C 0.039 3.961 15 N -0.894 5.894 16 Si 0.933 3.067 17 H -0.271 1.271 18 H -0.270 1.270 19 H -0.282 1.282 20 C -0.191 4.191 21 C -0.137 4.137 22 C 0.470 3.530 23 O -0.523 6.523 24 O -0.351 6.351 25 C 0.028 3.972 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.423 0.577 32 H 0.119 0.881 33 H 0.140 0.860 34 H 0.264 0.736 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.139 0.861 40 H 0.060 0.940 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.956 0.179 15.378 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C -0.033 4.033 4 C 0.049 3.951 5 H 0.180 0.820 6 N -0.863 5.863 7 S 2.723 3.277 8 O -0.963 6.963 9 O -0.978 6.978 10 C -0.688 4.688 11 C 0.001 3.999 12 C -0.564 4.564 13 H 0.068 0.932 14 C -0.163 4.163 15 N -0.530 5.530 16 Si 0.758 3.242 17 H -0.196 1.196 18 H -0.195 1.195 19 H -0.208 1.208 20 C -0.228 4.228 21 C -0.176 4.176 22 C 0.311 3.689 23 O -0.411 6.411 24 O -0.266 6.266 25 C -0.065 4.065 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.259 0.741 32 H 0.137 0.863 33 H 0.158 0.842 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.157 0.843 40 H 0.079 0.921 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.977 -0.206 14.631 20.235 hybrid contribution 1.290 -0.945 -0.493 1.673 sum -12.687 -1.151 14.138 19.031 Atomic orbital electron populations 1.22950 0.78986 1.03800 1.01323 1.87854 1.21988 1.27743 1.95769 1.23199 0.89498 0.86078 1.04562 1.20715 0.96401 0.97400 0.80608 0.81999 1.55663 1.82502 1.20980 1.27127 1.04516 0.76294 0.73956 0.72907 1.93483 1.52507 1.65313 1.85024 1.93511 1.85920 1.62863 1.55469 1.29926 1.18109 1.12194 1.08584 1.18425 1.01934 0.86044 0.93520 1.20780 0.98009 1.38817 0.98801 0.93194 1.25507 0.97459 0.94607 0.98738 1.70054 1.06701 1.47671 1.28619 0.85886 0.78634 0.78355 0.81280 1.19593 1.19466 1.20785 1.23301 0.95972 1.01458 1.02110 1.22506 0.93841 1.02136 0.99101 1.23626 0.75540 0.84747 0.84941 1.90667 1.38437 1.26177 1.85867 1.86449 1.72658 1.52318 1.15212 1.23596 1.00503 0.94373 0.88016 0.91877 0.93474 0.88855 0.87591 0.90100 0.74070 0.86312 0.84190 0.92718 0.89834 0.87391 0.89121 0.91702 0.84341 0.92128 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -9.91 10.13 -148.98 -1.51 -11.42 16 3 C 0.04 0.95 5.71 71.98 0.41 1.36 16 4 C 0.16 3.88 2.99 44.24 0.13 4.02 16 5 H 0.16 2.90 7.13 -2.39 -0.02 2.88 16 6 N -1.10 -34.84 5.10 -172.52 -0.88 -35.72 16 7 S 2.63 102.77 5.18 -56.49 -0.29 102.48 16 8 O -0.97 -37.76 17.05 -127.65 -2.18 -39.94 16 9 O -0.99 -48.54 17.48 -127.65 -2.23 -50.77 16 10 C -0.56 -22.12 5.83 71.98 0.42 -21.70 16 11 C 0.00 0.14 1.33 -52.93 -0.07 0.07 16 12 C -0.53 -29.03 7.97 25.60 0.20 -28.83 16 13 H 0.05 2.87 7.82 -2.91 -0.02 2.84 16 14 C 0.04 2.17 5.39 84.66 0.46 2.63 16 15 N -0.89 -49.80 12.93 21.45 0.28 -49.53 16 16 Si 0.93 44.66 29.55 68.60 2.03 46.69 16 17 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 20 C -0.19 -7.65 9.96 30.62 0.30 -7.35 16 21 C -0.14 -5.85 9.44 30.62 0.29 -5.56 16 22 C 0.47 12.30 6.84 71.24 0.49 12.79 16 23 O -0.52 -17.21 15.74 21.98 0.35 -16.86 16 24 O -0.35 -7.15 10.49 -51.39 -0.54 -7.69 16 25 C 0.03 0.43 10.56 113.37 1.20 1.62 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.83 7.36 -2.39 -0.02 1.81 16 31 H 0.42 13.86 8.18 -96.74 -0.79 13.07 16 32 H 0.12 5.24 8.14 -2.39 -0.02 5.22 16 33 H 0.14 4.15 7.36 -2.39 -0.02 4.13 16 34 H 0.26 14.00 8.32 -92.71 -0.77 13.23 16 35 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 37 H 0.09 3.39 8.14 -2.38 -0.02 3.37 16 38 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 41 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 Total: -1.00 -75.26 365.82 0.35 -74.91 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.25 Total: 27.14 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 5.08 Total: -39.28 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -0.60 Total: -85.24 kcal Atomic # 8 Polarization: -120.57 SS G_CDS: -6.11 Total: -126.68 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 102.77 SS G_CDS: -0.29 Total: 102.48 kcal Total: -75.26 0.35 -74.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363835177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.529 kcal (2) G-P(sol) polarization free energy of solvation -75.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds