Wall clock time and date at job start Fri Apr 10 2020 14:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47094 * 89.99954 * 8 6 4 10 10 H 1.48499 * 109.46907 * 209.99714 * 8 6 4 11 11 H 1.48495 * 109.46933 * 330.00015 * 8 6 4 12 12 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 13 13 C 1.34773 * 120.00111 * 84.99828 * 12 2 1 14 14 O 1.21277 * 120.00090 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99847 * 179.97438 * 13 12 2 16 16 N 1.46500 * 109.46909 * 180.02562 * 15 13 12 17 17 C 1.34783 * 119.99661 * 179.97438 * 16 15 13 18 18 O 1.21550 * 120.00063 * 0.02562 * 17 16 15 19 19 C 1.47841 * 119.99573 * 179.97438 * 17 16 15 20 20 C 1.39604 * 120.14797 * 359.73132 * 19 17 16 21 21 C 1.37933 * 119.84931 * 179.69519 * 20 19 17 22 22 C 1.38381 * 120.15163 * 0.59872 * 21 20 19 23 23 C 1.38343 * 120.28522 * 359.67337 * 22 21 20 24 24 N 1.48018 * 119.91967 * 179.97438 * 23 22 21 25 25 O 1.21805 * 119.99316 * 180.02562 * 24 23 22 26 26 O 1.21796 * 120.00576 * 0.02562 * 24 23 22 27 27 C 1.37974 * 120.14847 * 0.02706 * 23 22 21 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 32 32 H 0.97003 * 119.99624 * 264.99510 * 12 2 1 33 33 H 1.08999 * 109.46659 * 299.99752 * 15 13 12 34 34 H 1.08988 * 109.47257 * 59.99966 * 15 13 12 35 35 H 0.96998 * 120.00172 * 359.97438 * 16 15 13 36 36 H 1.07994 * 120.06818 * 359.97438 * 20 19 17 37 37 H 1.08000 * 119.92484 * 180.29684 * 21 20 19 38 38 H 1.08001 * 119.85716 * 179.69978 * 22 21 20 39 39 H 1.08002 * 120.07460 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8590 1.1587 -2.4115 15 6 2.6499 -0.7284 -3.5876 16 7 2.6995 0.2132 -4.7088 17 6 3.1220 -0.2023 -5.9194 18 8 3.4613 -1.3583 -6.0809 19 6 3.1716 0.7477 -7.0511 20 6 2.7763 2.0744 -6.8706 21 6 2.8310 2.9571 -7.9291 22 6 3.2648 2.5273 -9.1709 23 6 3.6525 1.2125 -9.3578 24 7 4.1146 0.7613 -10.6897 25 8 4.4559 -0.3961 -10.8559 26 8 4.1536 1.5472 -11.6193 27 6 3.6085 0.3208 -8.3059 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1617 3.4844 32 1 2.2491 -1.6317 -1.1527 33 1 3.6492 -1.1201 -3.3980 34 1 1.9777 -1.5506 -3.8326 35 1 2.4284 1.1356 -4.5800 36 1 2.4327 2.4098 -5.9033 37 1 2.5301 3.9849 -7.7896 38 1 3.3011 3.2213 -9.9976 39 1 3.9119 -0.7052 -8.4531 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194742662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:17 Heat of formation + Delta-G solvation = -49.642426 kcal Electronic energy + Delta-G solvation = -25342.668494 eV Core-core repulsion = 21253.766627 eV Total energy + Delta-G solvation = -4088.901867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.120 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.54281 -40.78545 -39.41222 -38.58737 -36.90270 -35.32009 -34.54523 -32.74255 -32.52362 -32.10183 -29.66208 -27.59764 -26.86106 -25.38335 -24.35331 -23.01308 -21.55048 -21.02394 -20.01549 -19.58270 -18.98204 -17.96690 -17.87628 -17.17670 -16.86032 -16.42368 -15.94395 -15.72788 -15.33563 -15.14070 -14.82212 -14.64611 -14.47018 -13.75788 -13.55049 -13.06162 -12.87763 -12.66552 -12.48190 -12.40789 -11.89779 -11.81370 -11.55584 -11.46232 -11.21421 -11.08114 -10.91267 -10.49397 -10.43016 -10.35337 -10.24172 -9.98090 -9.42796 -9.41799 -9.19990 -8.68524 -8.16716 -6.24195 -4.34143 -0.63960 0.04642 0.86110 0.96222 2.19258 2.60953 2.98316 3.05482 3.17507 3.24778 3.26376 3.79449 3.84549 3.91600 4.14325 4.17523 4.26462 4.28808 4.59713 4.97107 5.07493 5.08946 5.16851 5.30741 5.31478 5.33838 5.36048 5.62086 5.98072 6.01223 6.66428 6.78862 6.98035 7.11345 7.22107 7.27211 7.35687 7.54877 7.73558 7.78022 8.00096 8.40116 8.58922 8.83127 9.33561 10.81705 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.036308 B = 0.002003 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.002567 B =13974.591245 C =14458.423649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.699 5.699 13 C 0.496 3.504 14 O -0.557 6.557 15 C 0.096 3.904 16 N -0.703 5.703 17 C 0.560 3.440 18 O -0.529 6.529 19 C -0.126 4.126 20 C -0.034 4.034 21 C -0.120 4.120 22 C -0.034 4.034 23 C -0.053 4.053 24 N 0.029 4.971 25 O -0.153 6.153 26 O -0.158 6.158 27 C 0.002 3.998 28 H 0.028 0.972 29 H 0.092 0.908 30 H 0.014 0.986 31 H 0.265 0.735 32 H 0.393 0.607 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.412 0.588 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.864 3.184 -19.563 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.346 5.346 13 C 0.280 3.720 14 O -0.437 6.437 15 C -0.031 4.031 16 N -0.358 5.358 17 C 0.345 3.655 18 O -0.406 6.406 19 C -0.130 4.130 20 C -0.053 4.053 21 C -0.138 4.138 22 C -0.053 4.053 23 C -0.136 4.136 24 N 0.549 4.451 25 O -0.370 6.370 26 O -0.374 6.374 27 C -0.018 4.018 28 H 0.047 0.953 29 H 0.110 0.890 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.226 0.774 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.251 0.749 36 H 0.170 0.830 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.563 3.535 -18.833 19.333 hybrid contribution 0.362 -0.567 0.669 0.949 sum 2.925 2.968 -18.164 18.636 Atomic orbital electron populations 1.22089 0.98211 0.99314 1.01011 1.18827 0.91175 0.94001 0.79713 0.93189 1.21190 1.32728 1.13409 0.90196 0.91917 1.24889 0.94695 0.94952 0.99152 1.69889 1.35662 1.22395 1.24066 0.86414 0.78624 0.79867 0.82016 1.20507 1.21018 1.19776 1.46505 1.64004 1.13859 1.10217 1.20241 0.79143 0.87630 0.84977 1.90639 1.52188 1.15962 1.84874 1.21252 1.03874 0.92597 0.85410 1.45567 1.66267 1.15393 1.08572 1.17838 0.78068 0.87286 0.82267 1.90834 1.48123 1.18058 1.83583 1.19894 1.04532 0.94714 0.93882 1.21982 0.91202 0.91696 1.00411 1.21238 1.00193 1.01441 0.90926 1.21317 0.91599 0.92985 0.99420 1.21003 1.12116 0.96369 0.84127 1.43548 0.98233 1.00709 1.02604 1.94588 1.50056 1.02656 1.89698 1.94540 1.58044 1.51269 1.33537 1.21093 0.90480 1.01053 0.89203 0.95296 0.88974 0.96653 0.92458 0.77378 0.88236 0.88296 0.74870 0.83002 0.82501 0.82358 0.81496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.26 37.16 0.34 -3.08 16 2 C 0.26 6.22 2.56 -69.08 -0.18 6.04 16 3 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 4 C -0.54 -13.42 8.73 -34.45 -0.30 -13.73 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.88 -23.76 11.32 55.43 0.63 -23.13 16 8 Si 0.90 19.84 29.54 -169.99 -5.02 14.81 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 N -0.70 -12.89 5.07 -54.93 -0.28 -13.17 16 13 C 0.50 8.37 7.86 -10.99 -0.09 8.28 16 14 O -0.56 -11.06 15.33 5.56 0.09 -10.98 16 15 C 0.10 1.21 6.15 -5.19 -0.03 1.18 16 16 N -0.70 -8.11 5.48 -62.43 -0.34 -8.45 16 17 C 0.56 6.54 7.77 -12.33 -0.10 6.44 16 18 O -0.53 -7.76 16.35 5.32 0.09 -7.67 16 19 C -0.13 -1.15 5.87 -104.97 -0.62 -1.76 16 20 C -0.03 -0.22 9.54 -39.18 -0.37 -0.59 16 21 C -0.12 -0.58 10.03 -39.64 -0.40 -0.98 16 22 C -0.03 -0.21 9.55 -39.49 -0.38 -0.59 16 23 C -0.05 -0.48 6.85 -80.00 -0.55 -1.03 16 24 N 0.03 0.32 4.45 33.93 0.15 0.47 16 25 O -0.15 -1.92 18.44 -29.46 -0.54 -2.46 16 26 O -0.16 -1.81 18.44 -29.46 -0.54 -2.35 16 27 C 0.00 0.02 9.10 -39.19 -0.36 -0.34 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.39 6.19 8.54 -40.82 -0.35 5.84 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 1.14 8.14 -51.94 -0.42 0.71 16 35 H 0.41 4.40 5.47 -40.82 -0.22 4.18 16 36 H 0.15 0.75 6.41 -52.49 -0.34 0.42 16 37 H 0.16 0.30 8.06 -52.49 -0.42 -0.12 16 38 H 0.16 0.71 7.60 -52.49 -0.40 0.31 16 39 H 0.17 1.70 7.20 -52.49 -0.38 1.32 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -31.53 349.86 -7.66 -39.20 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -4.05 Total: 6.99 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -3.11 Total: 1.47 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.16 Total: -44.28 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.91 Total: -23.46 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.53 -7.66 -39.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194742662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.446 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds