Wall clock time and date at job start Fri Apr 10 2020 14:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47094 * 89.99954 * 8 6 4 10 10 H 1.48499 * 109.46907 * 209.99714 * 8 6 4 11 11 H 1.48495 * 109.46933 * 330.00015 * 8 6 4 12 12 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 13 13 C 1.34773 * 120.00111 * 84.99828 * 12 2 1 14 14 O 1.21277 * 120.00090 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99847 * 179.97438 * 13 12 2 16 16 N 1.46500 * 109.46909 * 180.02562 * 15 13 12 17 17 C 1.34783 * 119.99661 * 179.97438 * 16 15 13 18 18 O 1.21550 * 120.00063 * 0.02562 * 17 16 15 19 19 C 1.47841 * 119.99573 * 179.97438 * 17 16 15 20 20 C 1.39604 * 120.14797 * 359.73132 * 19 17 16 21 21 C 1.37933 * 119.84931 * 179.69519 * 20 19 17 22 22 C 1.38381 * 120.15163 * 0.59872 * 21 20 19 23 23 C 1.38343 * 120.28522 * 359.67337 * 22 21 20 24 24 N 1.48018 * 119.91967 * 179.97438 * 23 22 21 25 25 O 1.21805 * 119.99316 * 180.02562 * 24 23 22 26 26 O 1.21796 * 120.00576 * 0.02562 * 24 23 22 27 27 C 1.37974 * 120.14847 * 0.02706 * 23 22 21 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 32 32 H 0.97003 * 119.99624 * 264.99510 * 12 2 1 33 33 H 1.08999 * 109.46659 * 299.99752 * 15 13 12 34 34 H 1.08988 * 109.47257 * 59.99966 * 15 13 12 35 35 H 0.96998 * 120.00172 * 359.97438 * 16 15 13 36 36 H 1.07994 * 120.06818 * 359.97438 * 20 19 17 37 37 H 1.08000 * 119.92484 * 180.29684 * 21 20 19 38 38 H 1.08001 * 119.85716 * 179.69978 * 22 21 20 39 39 H 1.08002 * 120.07460 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8590 1.1587 -2.4115 15 6 2.6499 -0.7284 -3.5876 16 7 2.6995 0.2132 -4.7088 17 6 3.1220 -0.2023 -5.9194 18 8 3.4613 -1.3583 -6.0809 19 6 3.1716 0.7477 -7.0511 20 6 2.7763 2.0744 -6.8706 21 6 2.8310 2.9571 -7.9291 22 6 3.2648 2.5273 -9.1709 23 6 3.6525 1.2125 -9.3578 24 7 4.1146 0.7613 -10.6897 25 8 4.4559 -0.3961 -10.8559 26 8 4.1536 1.5472 -11.6193 27 6 3.6085 0.3208 -8.3059 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1617 3.4844 32 1 2.2491 -1.6317 -1.1527 33 1 3.6492 -1.1201 -3.3980 34 1 1.9777 -1.5506 -3.8326 35 1 2.4284 1.1356 -4.5800 36 1 2.4327 2.4098 -5.9033 37 1 2.5301 3.9849 -7.7896 38 1 3.3011 3.2213 -9.9976 39 1 3.9119 -0.7052 -8.4531 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194742662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:17 Heat of formation + Delta-G solvation = -71.052002 kcal Electronic energy + Delta-G solvation = -25343.596883 eV Core-core repulsion = 21253.766627 eV Total energy + Delta-G solvation = -4089.830256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.35216 -41.66497 -40.62271 -39.53844 -37.76150 -36.90160 -35.71988 -34.38159 -33.37942 -32.71588 -31.28698 -28.79624 -27.64048 -27.32623 -25.17601 -23.65906 -23.07789 -21.97236 -21.35053 -20.67304 -19.81678 -19.16065 -18.69635 -18.21156 -17.84979 -17.47087 -17.09164 -16.96241 -16.89349 -16.04588 -15.93855 -15.80218 -15.27046 -15.06371 -14.51755 -14.36971 -14.20214 -13.84011 -13.51783 -13.46172 -13.09190 -13.00002 -12.87167 -12.76502 -12.74698 -12.37114 -12.36912 -12.26471 -12.14826 -11.44645 -11.11701 -10.91601 -10.86234 -10.61208 -10.59677 -10.35000 -9.81513 -8.18611 -6.35154 -1.36445 -0.60842 0.15329 0.22725 1.44198 1.45185 1.46260 1.55829 1.64452 1.65743 2.32039 2.35869 2.59232 3.12563 3.18249 3.30638 3.51617 3.58317 3.74684 3.78089 4.01399 4.30328 4.33746 4.45633 4.54607 4.74779 4.75662 4.84263 4.92610 4.99954 5.04525 5.09500 5.30901 5.42095 5.57075 5.67506 5.87165 6.09411 6.22882 6.37923 6.71803 6.79085 6.91074 7.28690 7.43699 8.87218 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.036308 B = 0.002003 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.002567 B =13974.591245 C =14458.423649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.271 3.729 3 H 0.006 0.994 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.968 3.032 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.262 1.262 12 N -0.698 5.698 13 C 0.499 3.501 14 O -0.586 6.586 15 C 0.108 3.892 16 N -0.701 5.701 17 C 0.563 3.437 18 O -0.564 6.564 19 C -0.139 4.139 20 C -0.023 4.023 21 C -0.101 4.101 22 C -0.021 4.021 23 C -0.067 4.067 24 N 0.030 4.970 25 O -0.203 6.203 26 O -0.146 6.146 27 C -0.008 4.008 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.018 0.982 31 H 0.265 0.735 32 H 0.409 0.591 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.417 0.583 36 H 0.170 0.830 37 H 0.200 0.800 38 H 0.183 0.817 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 4.023 -19.857 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.024 0.976 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.553 5.553 8 Si 0.794 3.206 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.186 1.186 12 N -0.347 5.347 13 C 0.285 3.715 14 O -0.468 6.468 15 C -0.019 4.019 16 N -0.355 5.355 17 C 0.351 3.649 18 O -0.444 6.444 19 C -0.143 4.143 20 C -0.041 4.041 21 C -0.118 4.118 22 C -0.040 4.040 23 C -0.150 4.150 24 N 0.546 4.454 25 O -0.410 6.410 26 O -0.368 6.368 27 C -0.028 4.028 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.244 0.756 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.258 0.742 36 H 0.188 0.812 37 H 0.217 0.783 38 H 0.200 0.800 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.602 4.270 -19.140 19.783 hybrid contribution 0.323 -0.658 0.721 1.028 sum 2.926 3.612 -18.419 18.997 Atomic orbital electron populations 1.21910 0.98096 0.99548 0.99852 1.18388 0.91207 0.92127 0.81498 0.97585 1.21549 1.32545 1.13617 0.90819 0.90854 1.25735 0.94913 0.95614 1.02193 1.70028 1.36872 1.23819 1.24600 0.85395 0.77746 0.79202 0.78298 1.20452 1.21135 1.18578 1.46212 1.64455 1.14543 1.09503 1.20831 0.77938 0.87222 0.85485 1.90623 1.53214 1.17525 1.85462 1.21134 1.04738 0.92465 0.83547 1.45534 1.66234 1.15473 1.08285 1.18145 0.77007 0.87199 0.82582 1.90817 1.49771 1.19719 1.84119 1.19665 1.06507 0.95532 0.92576 1.22257 0.89637 0.90446 1.01804 1.21698 0.98029 1.02829 0.89291 1.21735 0.89714 0.91728 1.00845 1.21115 1.13713 0.97561 0.82624 1.43859 0.97747 1.00386 1.03378 1.94595 1.52517 1.03494 1.90349 1.94497 1.57050 1.50915 1.34385 1.20957 0.91314 1.00627 0.89900 0.94202 0.91545 0.96337 0.92555 0.75605 0.86818 0.86609 0.74236 0.81238 0.78313 0.79989 0.83317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.30 9.26 71.98 0.67 -5.63 16 2 C 0.27 12.83 2.56 44.25 0.11 12.94 16 3 H 0.01 0.35 7.58 -2.39 -0.02 0.33 16 4 C -0.55 -27.14 8.73 25.60 0.22 -26.92 16 5 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 6 C 0.02 0.81 5.30 84.65 0.45 1.26 16 7 N -0.91 -49.92 11.32 21.44 0.24 -49.68 16 8 Si 0.97 40.26 29.54 68.60 2.03 42.29 16 9 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 10 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 12 N -0.70 -25.18 5.07 -446.09 -2.26 -27.44 16 13 C 0.50 16.33 7.86 87.66 0.69 17.02 16 14 O -0.59 -23.02 15.33 -3.02 -0.05 -23.06 16 15 C 0.11 2.54 6.15 85.63 0.53 3.07 16 16 N -0.70 -15.08 5.48 -469.72 -2.57 -17.65 16 17 C 0.56 12.69 7.77 86.78 0.67 13.36 16 18 O -0.56 -16.57 16.35 -3.87 -0.06 -16.64 16 19 C -0.14 -2.35 5.87 -20.09 -0.12 -2.47 16 20 C -0.02 -0.22 9.54 22.53 0.21 -0.01 16 21 C -0.10 -0.53 10.03 22.23 0.22 -0.31 16 22 C -0.02 -0.20 9.55 22.33 0.21 0.02 16 23 C -0.07 -1.15 6.85 36.34 0.25 -0.90 16 24 N 0.03 0.68 4.45 -46.55 -0.21 0.47 16 25 O -0.20 -5.43 18.44 18.88 0.35 -5.08 16 26 O -0.15 -3.20 18.44 18.89 0.35 -2.86 16 27 C -0.01 -0.15 9.10 22.53 0.20 0.06 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 3.45 6.07 -2.39 -0.01 3.43 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.27 13.76 8.31 -92.70 -0.77 12.99 16 32 H 0.41 12.22 8.54 -92.71 -0.79 11.43 16 33 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.42 8.14 5.47 -92.71 -0.51 7.64 16 36 H 0.17 1.07 6.41 -2.91 -0.02 1.05 16 37 H 0.20 -0.50 8.06 -2.91 -0.02 -0.52 16 38 H 0.18 0.86 7.60 -2.91 -0.02 0.83 16 39 H 0.15 3.32 7.20 -2.91 -0.02 3.30 16 Total: -1.00 -70.52 349.86 1.98 -68.54 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -0.17 Total: 19.62 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 4.33 Total: 11.50 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -4.80 Total: -94.31 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: 0.59 Total: -47.64 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -70.52 1.98 -68.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194742662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.513 kcal (2) G-P(sol) polarization free energy of solvation -70.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds