Wall clock time and date at job start Fri Apr 10 2020 14:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46811 * 2 1 4 4 C 1.50695 * 109.47053 * 240.00297 * 2 1 3 5 5 H 1.08007 * 120.00278 * 239.99902 * 4 2 1 6 6 C 1.37879 * 120.00318 * 59.99733 * 4 2 1 7 7 N 1.31517 * 119.99497 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00285 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46999 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46827 * 120.00170 * 8 6 4 11 11 H 1.48498 * 109.47196 * 240.00218 * 8 6 4 12 12 N 1.46501 * 109.47038 * 120.00511 * 2 1 3 13 13 C 1.46501 * 120.00096 * 60.00021 * 12 2 1 14 14 C 1.34777 * 119.99807 * 240.00063 * 12 2 1 15 15 O 1.21365 * 120.00114 * 0.72588 * 14 12 2 16 16 C 1.49363 * 120.00296 * 180.72555 * 14 12 2 17 17 O 1.21361 * 119.99735 * 355.58931 * 16 14 12 18 18 N 1.34776 * 120.00137 * 175.58803 * 16 14 12 19 19 C 1.39075 * 119.99699 * 183.84469 * 18 16 14 20 20 C 1.39537 * 120.56327 * 332.91298 * 19 18 16 21 21 C 1.38249 * 118.42168 * 180.30590 * 20 19 18 22 22 C 1.38821 * 119.47115 * 359.44237 * 21 20 19 23 23 N 1.31361 * 121.11086 * 0.27594 * 22 21 20 24 24 C 1.32872 * 121.72040 * 359.97438 * 23 22 21 25 25 C 1.47691 * 119.80041 * 180.02562 * 24 23 22 26 26 O 1.21484 * 120.00035 * 174.15452 * 25 24 23 27 27 O 1.34733 * 120.00461 * 354.16109 * 25 24 23 28 28 H 1.08991 * 109.47108 * 59.99828 * 1 2 3 29 29 H 1.08998 * 109.46811 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47078 * 299.99414 * 1 2 3 31 31 H 0.97001 * 119.99663 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46826 * 263.63426 * 13 12 2 33 33 H 1.08999 * 109.47248 * 23.63346 * 13 12 2 34 34 H 1.09000 * 109.46857 * 143.63943 * 13 12 2 35 35 H 0.96996 * 119.99719 * 3.84806 * 18 16 14 36 36 H 1.08001 * 120.79204 * 0.02562 * 20 19 18 37 37 H 1.07997 * 120.26601 * 179.71359 * 21 20 19 38 38 H 1.07997 * 119.43749 * 180.25550 * 22 21 20 39 39 H 0.96699 * 117.00030 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2861 -3.6039 10 1 1.1678 -1.5864 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 6 2.7932 -0.0358 2.0833 15 8 3.0755 1.1300 1.8981 16 6 3.3045 -0.7445 3.2946 17 8 2.9577 -1.8851 3.5218 18 7 4.1510 -0.1174 4.1353 19 6 4.6897 -0.8028 5.2189 20 6 4.0048 -1.8750 5.7918 21 6 4.5782 -2.5207 6.8714 22 6 5.8127 -2.0967 7.3440 23 7 6.4432 -1.0884 6.7859 24 6 5.9322 -0.4322 5.7497 25 6 6.6780 0.6952 5.1546 26 8 6.2671 1.2292 4.1437 27 8 7.8141 1.1314 5.7327 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 0.7095 1.1619 -3.4843 32 1 0.8025 -2.1454 2.0930 33 1 1.4194 -2.5680 0.4777 34 1 2.5082 -2.6101 1.8853 35 1 4.3843 0.8119 3.9845 36 1 3.0473 -2.1901 5.4040 37 1 4.0718 -3.3512 7.3407 38 1 6.2620 -2.6041 8.1848 39 1 8.2669 1.8722 5.3070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595237935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:08 Heat of formation + Delta-G solvation = -89.878405 kcal Electronic energy + Delta-G solvation = -27013.767529 eV Core-core repulsion = 22923.120899 eV Total energy + Delta-G solvation = -4090.646630 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.120 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65151 -40.33228 -39.54618 -38.22722 -36.60857 -35.91270 -34.94569 -32.82291 -32.70294 -30.72694 -29.56280 -26.43712 -25.79545 -25.32672 -25.02720 -23.33337 -22.08488 -20.88958 -19.44698 -18.62643 -17.96659 -17.76569 -17.37441 -16.53133 -16.42956 -16.07510 -15.91960 -15.57924 -15.30192 -15.01606 -14.45748 -14.22590 -13.84138 -13.73182 -13.47471 -13.22075 -12.90512 -12.57918 -12.41813 -11.89107 -11.81232 -11.68434 -11.42384 -11.14072 -11.01424 -10.90440 -10.81822 -10.72466 -10.32808 -10.24042 -10.13895 -10.00024 -9.26710 -8.87905 -8.69590 -8.50230 -7.80153 -6.15061 -4.23505 0.10118 0.79267 1.74934 2.12139 2.44300 2.59334 3.23192 3.31361 3.34765 3.39871 3.61633 3.84887 3.96942 4.33134 4.40757 4.52007 4.68127 4.69809 4.97039 5.10100 5.17020 5.55753 5.74950 5.81493 6.01099 6.12785 6.14476 6.29025 6.54105 6.64108 6.70672 6.90186 6.98321 7.19315 7.30630 7.34391 7.61739 7.62502 7.72522 7.90701 8.04847 8.28150 8.52946 8.81585 9.42863 10.90524 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.003251 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.657263 B = 8610.774296 C = 9218.588434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.254 3.746 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.549 5.549 13 C 0.072 3.928 14 C 0.493 3.507 15 O -0.526 6.526 16 C 0.512 3.488 17 O -0.498 6.498 18 N -0.635 5.635 19 C 0.179 3.821 20 C -0.104 4.104 21 C -0.112 4.112 22 C 0.071 3.929 23 N -0.412 5.412 24 C 0.043 3.957 25 C 0.544 3.456 26 O -0.500 6.500 27 O -0.491 6.491 28 H 0.097 0.903 29 H 0.033 0.967 30 H 0.013 0.987 31 H 0.264 0.736 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.437 0.563 36 H 0.174 0.826 37 H 0.149 0.851 38 H 0.168 0.832 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.037 -5.385 19.385 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.155 3.845 3 H 0.085 0.915 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.280 5.280 13 C -0.071 4.071 14 C 0.273 3.727 15 O -0.404 6.404 16 C 0.296 3.704 17 O -0.372 6.372 18 N -0.286 5.286 19 C 0.077 3.923 20 C -0.132 4.132 21 C -0.132 4.132 22 C -0.093 4.093 23 N -0.123 5.123 24 C -0.095 4.095 25 C 0.386 3.614 26 O -0.388 6.388 27 O -0.301 6.301 28 H 0.116 0.884 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.283 0.717 36 H 0.191 0.809 37 H 0.167 0.833 38 H 0.185 0.815 39 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 7.303 -5.259 19.339 21.331 hybrid contribution -0.064 0.073 -1.490 1.493 sum 7.239 -5.186 17.849 19.947 Atomic orbital electron populations 1.22092 0.97438 0.99837 1.01101 1.19210 0.91390 0.94656 0.79269 0.91478 1.21312 1.32221 1.13261 0.89970 0.91908 1.24888 0.94799 0.94949 0.99024 1.69884 1.36149 1.22468 1.23885 0.86383 0.78639 0.79596 0.82475 1.19721 1.20829 1.20814 1.48284 1.45244 1.12600 1.21883 1.22120 1.01118 0.81826 1.02046 1.19424 0.82124 0.87175 0.83930 1.90765 1.58118 1.15838 1.75667 1.21226 0.78268 0.86292 0.84580 1.90588 1.55932 1.17571 1.73120 1.43712 1.43866 1.17557 1.23494 1.18705 0.91182 0.94110 0.88281 1.22176 1.01987 0.94420 0.94568 1.22466 0.96161 0.99550 0.95066 1.22838 0.92885 0.93668 0.99880 1.67612 1.32994 1.05777 1.05872 1.19627 0.91657 0.99261 0.98962 1.20349 0.78892 0.81304 0.80806 1.90874 1.67463 1.56504 1.23937 1.84655 1.36789 1.52139 1.56491 0.88450 0.94783 0.96792 0.92575 0.93309 0.90249 0.89824 0.71698 0.80917 0.83332 0.81496 0.72652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.97 37.16 0.33 -3.10 16 2 C 0.25 6.41 2.63 -69.08 -0.18 6.23 16 3 H 0.07 1.93 6.90 -51.93 -0.36 1.57 16 4 C -0.53 -14.14 7.95 -34.44 -0.27 -14.42 16 5 H 0.06 1.67 7.44 -52.48 -0.39 1.28 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.55 -11.95 2.75 -175.80 -0.48 -12.44 16 13 C 0.07 1.31 8.37 59.85 0.50 1.81 16 14 C 0.49 10.42 7.74 -11.63 -0.09 10.33 16 15 O -0.53 -12.51 15.81 5.48 0.09 -12.42 16 16 C 0.51 8.86 7.65 -11.63 -0.09 8.77 16 17 O -0.50 -8.15 10.21 5.49 0.06 -8.09 16 18 N -0.64 -9.85 4.77 -10.02 -0.05 -9.90 16 19 C 0.18 2.39 6.45 -83.39 -0.54 1.85 16 20 C -0.10 -1.15 8.86 -39.09 -0.35 -1.50 16 21 C -0.11 -0.89 10.10 -39.36 -0.40 -1.28 16 22 C 0.07 0.59 11.17 -17.54 -0.20 0.39 16 23 N -0.41 -4.74 10.12 -9.68 -0.10 -4.84 16 24 C 0.04 0.55 6.76 -82.86 -0.56 -0.01 16 25 C 0.54 6.98 8.29 34.59 0.29 7.26 16 26 O -0.50 -7.64 14.62 -19.25 -0.28 -7.92 16 27 O -0.49 -4.80 13.25 -40.58 -0.54 -5.34 16 28 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 29 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.48 7.12 -51.93 -0.37 1.11 16 34 H 0.08 1.45 5.54 -51.93 -0.29 1.16 16 35 H 0.44 7.11 5.62 -40.82 -0.23 6.88 16 36 H 0.17 1.99 5.75 -52.49 -0.30 1.69 16 37 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.41 2.02 9.11 45.56 0.42 2.44 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -32.55 335.89 -5.35 -37.90 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -3.06 Total: 8.12 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: -1.65 Total: 18.02 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.00 Total: -51.15 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.68 Total: -33.77 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.55 -5.35 -37.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595237935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.982 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds