Wall clock time and date at job start Fri Apr 10 2020 14:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46811 * 2 1 4 4 C 1.50695 * 109.47053 * 240.00297 * 2 1 3 5 5 H 1.08007 * 120.00278 * 239.99902 * 4 2 1 6 6 C 1.37879 * 120.00318 * 59.99733 * 4 2 1 7 7 N 1.31517 * 119.99497 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00285 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46999 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46827 * 120.00170 * 8 6 4 11 11 H 1.48498 * 109.47196 * 240.00218 * 8 6 4 12 12 N 1.46501 * 109.47038 * 120.00511 * 2 1 3 13 13 C 1.46501 * 120.00096 * 60.00021 * 12 2 1 14 14 C 1.34777 * 119.99807 * 240.00063 * 12 2 1 15 15 O 1.21365 * 120.00114 * 0.72588 * 14 12 2 16 16 C 1.49363 * 120.00296 * 180.72555 * 14 12 2 17 17 O 1.21361 * 119.99735 * 355.58931 * 16 14 12 18 18 N 1.34776 * 120.00137 * 175.58803 * 16 14 12 19 19 C 1.39075 * 119.99699 * 183.84469 * 18 16 14 20 20 C 1.39537 * 120.56327 * 332.91298 * 19 18 16 21 21 C 1.38249 * 118.42168 * 180.30590 * 20 19 18 22 22 C 1.38821 * 119.47115 * 359.44237 * 21 20 19 23 23 N 1.31361 * 121.11086 * 0.27594 * 22 21 20 24 24 C 1.32872 * 121.72040 * 359.97438 * 23 22 21 25 25 C 1.47691 * 119.80041 * 180.02562 * 24 23 22 26 26 O 1.21484 * 120.00035 * 174.15452 * 25 24 23 27 27 O 1.34733 * 120.00461 * 354.16109 * 25 24 23 28 28 H 1.08991 * 109.47108 * 59.99828 * 1 2 3 29 29 H 1.08998 * 109.46811 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47078 * 299.99414 * 1 2 3 31 31 H 0.97001 * 119.99663 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46826 * 263.63426 * 13 12 2 33 33 H 1.08999 * 109.47248 * 23.63346 * 13 12 2 34 34 H 1.09000 * 109.46857 * 143.63943 * 13 12 2 35 35 H 0.96996 * 119.99719 * 3.84806 * 18 16 14 36 36 H 1.08001 * 120.79204 * 0.02562 * 20 19 18 37 37 H 1.07997 * 120.26601 * 179.71359 * 21 20 19 38 38 H 1.07997 * 119.43749 * 180.25550 * 22 21 20 39 39 H 0.96699 * 117.00030 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2861 -3.6039 10 1 1.1678 -1.5864 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 6 2.7932 -0.0358 2.0833 15 8 3.0755 1.1300 1.8981 16 6 3.3045 -0.7445 3.2946 17 8 2.9577 -1.8851 3.5218 18 7 4.1510 -0.1174 4.1353 19 6 4.6897 -0.8028 5.2189 20 6 4.0048 -1.8750 5.7918 21 6 4.5782 -2.5207 6.8714 22 6 5.8127 -2.0967 7.3440 23 7 6.4432 -1.0884 6.7859 24 6 5.9322 -0.4322 5.7497 25 6 6.6780 0.6952 5.1546 26 8 6.2671 1.2292 4.1437 27 8 7.8141 1.1314 5.7327 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 0.7095 1.1619 -3.4843 32 1 0.8025 -2.1454 2.0930 33 1 1.4194 -2.5680 0.4777 34 1 2.5082 -2.6101 1.8853 35 1 4.3843 0.8119 3.9845 36 1 3.0473 -2.1901 5.4040 37 1 4.0718 -3.3512 7.3407 38 1 6.2620 -2.6041 8.1848 39 1 8.2669 1.8722 5.3070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595237935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:08 Heat of formation + Delta-G solvation = -114.380781 kcal Electronic energy + Delta-G solvation = -27014.830032 eV Core-core repulsion = 22923.120899 eV Total energy + Delta-G solvation = -4091.709132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.73366 -41.56582 -40.54472 -39.67264 -37.77322 -37.32979 -36.25006 -34.74090 -33.50707 -31.74460 -31.42253 -27.94352 -27.36474 -26.89000 -26.14843 -24.54355 -23.00213 -22.41036 -20.93507 -19.54782 -19.22126 -18.74632 -18.66103 -18.38484 -17.72556 -17.42850 -17.18690 -16.88295 -16.59408 -16.16971 -15.97788 -15.45295 -15.08892 -14.78121 -14.63204 -14.50554 -14.35771 -14.01768 -13.73101 -13.59097 -13.25143 -13.03111 -12.78001 -12.73843 -12.73275 -12.50214 -12.30167 -12.25743 -12.11728 -11.96890 -11.24571 -11.01717 -10.85644 -10.58745 -10.26419 -9.73450 -9.52357 -8.19517 -6.35996 -0.80058 -0.11605 0.42780 1.10499 1.24261 1.40558 1.42891 1.54112 1.75253 2.00517 2.34076 2.48118 2.65893 3.09104 3.13979 3.21139 3.55750 3.73658 3.97838 4.16145 4.42414 4.45305 4.64575 4.69679 4.71643 4.85813 4.90263 4.97106 5.04506 5.12864 5.31995 5.35457 5.38088 5.51050 5.59061 5.75900 5.92482 6.07089 6.31001 6.52808 6.55162 6.68303 6.86736 6.91794 7.34703 8.85623 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.003251 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.657263 B = 8610.774296 C = 9218.588434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.257 3.743 3 H 0.021 0.979 4 C -0.543 4.543 5 H 0.061 0.939 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.967 3.033 9 H -0.267 1.267 10 H -0.272 1.272 11 H -0.284 1.284 12 N -0.557 5.557 13 C 0.075 3.925 14 C 0.484 3.516 15 O -0.564 6.564 16 C 0.523 3.477 17 O -0.489 6.489 18 N -0.631 5.631 19 C 0.151 3.849 20 C -0.113 4.113 21 C -0.087 4.087 22 C 0.082 3.918 23 N -0.429 5.429 24 C 0.029 3.971 25 C 0.544 3.456 26 O -0.535 6.535 27 O -0.484 6.484 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.024 0.976 31 H 0.267 0.733 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.431 0.569 36 H 0.169 0.831 37 H 0.194 0.806 38 H 0.211 0.789 39 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.691 -8.155 21.508 24.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.156 3.844 3 H 0.039 0.961 4 C -0.582 4.582 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.197 1.197 11 H -0.210 1.210 12 N -0.288 5.288 13 C -0.066 4.066 14 C 0.266 3.734 15 O -0.444 6.444 16 C 0.306 3.694 17 O -0.364 6.364 18 N -0.282 5.282 19 C 0.051 3.949 20 C -0.140 4.140 21 C -0.107 4.107 22 C -0.081 4.081 23 N -0.140 5.140 24 C -0.108 4.108 25 C 0.388 3.612 26 O -0.426 6.426 27 O -0.296 6.296 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.276 0.724 36 H 0.186 0.814 37 H 0.211 0.789 38 H 0.228 0.772 39 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 7.991 -8.054 21.519 24.326 hybrid contribution -0.173 0.908 -1.944 2.152 sum 7.818 -7.146 19.575 22.257 Atomic orbital electron populations 1.21886 0.96179 1.00555 1.00472 1.18854 0.92312 0.92594 0.80595 0.96139 1.21537 1.32423 1.13321 0.90897 0.92079 1.25697 0.94896 0.95589 1.01887 1.70009 1.36936 1.23598 1.24638 0.85379 0.78284 0.78442 0.78754 1.19130 1.19729 1.20995 1.48256 1.45465 1.13874 1.21166 1.22259 1.02423 0.79666 1.02277 1.20107 0.81388 0.86955 0.84987 1.90732 1.59205 1.17635 1.76853 1.20229 0.79222 0.86150 0.83818 1.90575 1.56205 1.16775 1.72873 1.43531 1.43331 1.17348 1.23963 1.18952 0.92125 0.95442 0.88414 1.22294 1.01952 0.94070 0.95703 1.22939 0.95528 0.99273 0.92992 1.23672 0.92654 0.92045 0.99760 1.67687 1.33630 1.06953 1.05733 1.19631 0.91669 0.99736 0.99740 1.20528 0.79205 0.81155 0.80281 1.90860 1.68424 1.57770 1.25538 1.84613 1.35789 1.52935 1.56261 0.90739 0.93219 0.95690 0.92391 0.91166 0.90815 0.88660 0.72433 0.81354 0.78890 0.77231 0.70387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.33 8.97 71.98 0.65 -5.68 16 2 C 0.26 13.43 2.63 44.25 0.12 13.55 16 3 H 0.02 1.26 6.90 -2.39 -0.02 1.24 16 4 C -0.54 -29.60 7.95 25.60 0.20 -29.40 16 5 H 0.06 3.27 7.44 -2.91 -0.02 3.25 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -51.88 11.32 21.45 0.24 -51.64 16 8 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 N -0.56 -24.73 2.75 -828.46 -2.28 -27.01 16 13 C 0.08 2.68 8.37 127.77 1.07 3.75 16 14 C 0.48 21.16 7.74 87.24 0.68 21.84 16 15 O -0.56 -28.45 15.81 -3.29 -0.05 -28.50 16 16 C 0.52 18.27 7.65 87.24 0.67 18.94 16 17 O -0.49 -15.53 10.21 -3.28 -0.03 -15.56 16 18 N -0.63 -20.03 4.77 -303.98 -1.45 -21.48 16 19 C 0.15 3.93 6.45 38.76 0.25 4.18 16 20 C -0.11 -2.24 8.86 22.59 0.20 -2.04 16 21 C -0.09 -0.99 10.10 22.41 0.23 -0.76 16 22 C 0.08 1.01 11.17 84.90 0.95 1.96 16 23 N -0.43 -8.81 10.12 -184.55 -1.87 -10.68 16 24 C 0.03 0.71 6.76 41.94 0.28 1.00 16 25 C 0.54 14.08 8.29 70.32 0.58 14.66 16 26 O -0.54 -17.09 14.62 19.89 0.29 -16.80 16 27 O -0.48 -9.15 13.25 -56.43 -0.75 -9.90 16 28 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 29 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 30 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.07 2.70 7.12 -2.39 -0.02 2.68 16 34 H 0.10 3.17 5.54 -2.39 -0.01 3.16 16 35 H 0.43 14.80 5.62 -92.71 -0.52 14.28 16 36 H 0.17 3.51 5.75 -2.91 -0.02 3.49 16 37 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 38 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16 39 H 0.43 3.99 9.11 -74.06 -0.67 3.32 16 Total: -1.00 -73.72 335.89 2.40 -71.32 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -0.05 Total: 21.81 kcal Atomic # 6 Polarization: 37.17 SS G_CDS: 6.32 Total: 43.49 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -5.36 Total: -110.81 kcal Atomic # 8 Polarization: -70.22 SS G_CDS: -0.54 Total: -70.76 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -73.72 2.40 -71.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595237935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.059 kcal (2) G-P(sol) polarization free energy of solvation -73.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds