Wall clock time and date at job start Fri Apr 10 2020 14:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 N 1.46498 * 109.47113 * 185.00342 * 4 2 1 6 6 C 1.38647 * 120.00203 * 179.97438 * 5 4 2 7 7 C 1.39622 * 120.03542 * 0.02562 * 6 5 4 8 8 C 1.38259 * 118.03095 * 179.97438 * 7 6 5 9 9 C 1.40151 * 117.97849 * 359.97438 * 8 7 6 10 10 C 1.43193 * 120.10611 * 179.97438 * 9 8 7 11 11 N 8.96979 * 128.08278 * 237.97299 * 2 1 3 12 12 N 1.32800 * 119.78388 * 0.02562 * 9 8 7 13 13 N 1.28357 * 122.09499 * 359.72098 * 12 9 8 14 14 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 15 15 C 1.34779 * 119.99741 * 275.00368 * 14 2 1 16 16 O 1.21279 * 120.00369 * 359.97438 * 15 14 2 17 17 C 1.50708 * 119.99762 * 179.97438 * 15 14 2 18 18 S 1.81002 * 109.47063 * 179.97438 * 17 15 14 19 19 C 1.76200 * 99.99762 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00163 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99866 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99671 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 119.99833 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47405 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47087 * 120.00112 * 23 21 19 26 26 H 1.48499 * 109.47111 * 240.00103 * 23 21 19 27 27 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 28 28 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 31 31 H 1.09002 * 109.47223 * 64.99920 * 4 2 1 32 32 H 0.97004 * 120.00154 * 359.97438 * 5 4 2 33 33 H 1.07998 * 120.97783 * 359.94725 * 7 6 5 34 34 H 1.07996 * 121.00678 * 179.97438 * 8 7 6 35 35 H 0.96997 * 120.00110 * 94.99637 * 14 2 1 36 36 H 1.08994 * 109.47136 * 300.00021 * 17 15 14 37 37 H 1.09002 * 109.46457 * 59.99935 * 17 15 14 38 38 H 0.97003 * 119.99794 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1924 -1.4465 -2.2193 7 6 3.4989 -1.9706 -3.3119 8 6 4.2306 -2.5796 -4.3145 9 6 5.6239 -2.6328 -4.1721 10 6 6.4260 -3.2535 -5.1829 11 7 7.0626 -3.7442 -5.9857 12 7 6.1975 -2.1066 -3.0962 13 7 5.5159 -1.5376 -2.1693 14 7 2.0184 -0.6906 1.1962 15 6 2.1470 -0.0182 2.3572 16 8 1.8589 1.1586 2.4115 17 6 2.6488 -0.7288 3.5878 18 16 2.7104 0.4345 4.9732 19 6 3.3134 -0.6308 6.2405 20 1 3.5228 -1.6672 6.0206 21 6 3.5205 -0.1376 7.5214 22 7 3.2658 1.1257 7.7893 23 14 4.1605 -1.2668 8.8647 24 1 4.3664 -2.6288 8.3101 25 1 5.4509 -0.7420 9.3793 26 1 3.1735 -1.3270 9.9726 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6055 -1.7198 -1.2951 31 1 1.7517 -0.1583 -2.1370 32 1 3.9825 -0.4622 -0.4318 33 1 2.4227 -1.9025 -3.3719 34 1 3.7434 -3.0016 -5.1810 35 1 2.2490 -1.6317 1.1527 36 1 1.9759 -1.5505 3.8326 37 1 3.6479 -1.1213 3.3987 38 1 3.4102 1.4703 8.6845 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107653447.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:21 Heat of formation + Delta-G solvation = 56.950498 kcal Electronic energy + Delta-G solvation = -22603.165237 eV Core-core repulsion = 18993.931209 eV Total energy + Delta-G solvation = -3609.234029 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.100 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55915 -39.73335 -37.74317 -36.91597 -35.08569 -33.71156 -32.47046 -32.10123 -30.99009 -28.72340 -27.16922 -25.54112 -25.31847 -24.19111 -22.06498 -20.54058 -20.15982 -18.72615 -17.89890 -17.86954 -16.77788 -16.45165 -15.92521 -15.45732 -15.06888 -14.98366 -14.84095 -14.54016 -14.39404 -14.03804 -13.72095 -13.51811 -13.36609 -13.29043 -13.21483 -13.05490 -12.64643 -12.26878 -12.06421 -11.87984 -11.50504 -11.24229 -11.09790 -11.06437 -10.84685 -10.79071 -10.17198 -9.85534 -9.56237 -9.19852 -9.10146 -8.67383 -8.29939 -6.55555 -6.26121 -3.97104 0.14661 0.27799 2.03885 2.32605 2.37687 2.87721 2.92409 3.08625 3.19281 3.24719 3.29150 3.31005 3.57641 3.86560 3.99200 4.08296 4.16299 4.20479 4.32785 4.56075 4.79742 4.88960 4.96151 5.04268 5.09616 5.11523 5.18575 5.31887 5.37911 5.53047 5.73519 5.79611 5.93494 6.06038 6.24614 6.40207 6.85626 6.94945 7.47969 7.56243 8.18664 8.31250 8.43045 9.19771 10.81319 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.015853 B = 0.002279 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.782147 B =12283.768170 C =13687.281420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 H 0.099 0.901 4 C 0.111 3.889 5 N -0.698 5.698 6 C 0.364 3.636 7 C -0.180 4.180 8 C -0.031 4.031 9 C 0.066 3.934 10 C 0.278 3.722 11 N -0.392 5.392 12 N -0.147 5.147 13 N -0.291 5.291 14 N -0.739 5.739 15 C 0.535 3.465 16 O -0.512 6.512 17 C -0.155 4.155 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.280 1.280 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.420 0.580 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 -7.332 -24.235 25.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 H 0.117 0.883 4 C -0.014 4.014 5 N -0.329 5.329 6 C 0.121 3.879 7 C -0.213 4.213 8 C -0.061 4.061 9 C -0.084 4.084 10 C -0.040 4.040 11 N -0.070 5.070 12 N 0.006 4.994 13 N -0.146 5.146 14 N -0.395 5.395 15 C 0.321 3.679 16 O -0.386 6.386 17 C -0.306 4.306 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.206 1.206 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.258 0.742 33 H 0.176 0.824 34 H 0.176 0.824 35 H 0.234 0.766 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.274 -5.588 -24.370 25.365 hybrid contribution -0.559 -2.498 0.681 2.648 sum -4.832 -8.085 -23.689 25.493 Atomic orbital electron populations 1.22133 0.93773 1.02647 1.03523 1.21093 0.95126 0.98086 0.82976 0.88333 1.22006 0.78464 1.01729 0.99180 1.44560 1.06499 1.60016 1.21844 1.20242 0.91087 0.88481 0.88069 1.21774 1.02318 1.03072 0.94186 1.22047 0.91930 0.93391 0.98726 1.17701 0.90517 1.05641 0.94546 1.24538 0.93245 0.93556 0.92670 1.81287 1.06847 1.08737 1.10099 1.73218 1.29700 1.00370 0.96091 1.73340 1.03700 1.17737 1.19781 1.46146 1.69834 1.14085 1.09445 1.20358 0.76617 0.87202 0.83682 1.90717 1.47900 1.15700 1.84262 1.23545 1.03759 1.04949 0.98304 1.85393 1.86327 1.12759 0.98788 1.22899 1.51007 0.98153 0.96324 0.90851 1.24998 0.95049 0.95556 0.98000 1.70022 1.45521 1.13194 1.21498 0.86110 0.78557 0.80128 0.80668 1.19607 1.20518 1.20564 0.90761 0.91413 0.92088 0.90377 0.89577 0.74215 0.82448 0.82371 0.76632 0.89184 0.89105 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.48 37.16 0.35 -0.77 16 2 C 0.13 0.99 2.73 -67.93 -0.19 0.80 16 3 H 0.10 0.95 7.58 -51.93 -0.39 0.55 16 4 C 0.11 0.45 4.47 -4.04 -0.02 0.43 16 5 N -0.70 -4.41 5.55 -60.30 -0.33 -4.75 16 6 C 0.36 2.65 7.74 -154.88 -1.20 1.45 16 7 C -0.18 -0.77 9.39 -39.06 -0.37 -1.14 16 8 C -0.03 -0.14 9.91 -38.86 -0.38 -0.52 16 9 C 0.07 0.52 6.67 -84.81 -0.57 -0.04 16 10 C 0.28 2.52 15.57 -22.48 -0.35 2.17 16 11 N -0.39 -4.31 18.54 41.84 0.78 -3.54 16 12 N -0.15 -1.56 11.44 32.29 0.37 -1.19 16 13 N -0.29 -3.05 11.54 31.23 0.36 -2.69 16 14 N -0.74 -7.33 4.52 -53.80 -0.24 -7.57 16 15 C 0.54 8.55 7.81 -10.98 -0.09 8.46 16 16 O -0.51 -10.28 15.52 5.56 0.09 -10.19 16 17 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 18 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 19 C -0.54 -14.87 9.50 30.94 0.29 -14.57 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -25.68 13.22 55.49 0.73 -24.94 16 23 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.18 7.95 -51.93 -0.41 -0.23 16 31 H 0.09 0.19 7.95 -51.93 -0.41 -0.22 16 32 H 0.42 3.34 8.26 -40.82 -0.34 3.00 16 33 H 0.16 0.17 6.81 -52.49 -0.36 -0.19 16 34 H 0.16 0.17 8.06 -52.49 -0.42 -0.25 16 35 H 0.40 3.05 8.60 -40.82 -0.35 2.70 16 36 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 37 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 358.73 15.07 5.41 5.41 Total: -1.00 -35.89 358.73 -6.81 -42.70 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.35 Total: -1.15 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.38 Total: -4.41 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 1.66 Total: -44.68 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.89 -6.81 -42.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107653447.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.655 kcal (2) G-P(sol) polarization free energy of solvation -35.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds