Wall clock time and date at job start Fri Apr 10 2020 14:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 N 1.46501 * 109.47252 * 185.00253 * 4 2 1 6 6 C 1.31904 * 120.00239 * 119.99593 * 5 4 2 7 7 C 1.46877 * 120.57138 * 179.97438 * 6 5 4 8 8 C 1.34957 * 118.30591 * 179.97438 * 7 6 5 9 9 N 1.36658 * 119.28946 * 0.02562 * 8 7 6 10 10 H 0.96995 * 119.43206 * 180.02562 * 9 8 7 11 11 C 1.36210 * 121.13033 * 359.96872 * 9 8 7 12 12 C 1.43197 * 119.06577 * 180.02562 * 11 9 8 13 13 N 6.62902 * 97.84496 * 192.18474 * 2 1 3 14 14 N 1.31037 * 121.86750 * 359.78787 * 11 9 8 15 15 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 16 16 C 1.34777 * 120.00199 * 275.00460 * 15 2 1 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 2 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 2 19 19 S 1.80999 * 109.46903 * 179.72354 * 18 16 15 20 20 C 1.76200 * 99.99730 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00351 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99941 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00384 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46990 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47522 * 119.99735 * 24 22 20 27 27 H 1.48500 * 109.47073 * 240.00101 * 24 22 20 28 28 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 29 29 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 30 30 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46830 * 304.99500 * 4 2 1 32 32 H 1.08994 * 109.47535 * 64.99592 * 4 2 1 33 33 H 1.08004 * 120.84893 * 359.95609 * 7 6 5 34 34 H 1.07996 * 120.35574 * 180.02562 * 8 7 6 35 35 H 0.97000 * 119.99484 * 94.99557 * 15 2 1 36 36 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 37 37 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 38 38 H 0.97002 * 120.00288 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.0767 -2.0126 -1.1990 7 6 5.5395 -2.1326 -1.1412 8 6 6.0811 -3.3686 -1.1520 9 7 5.2589 -4.4583 -1.2162 10 1 5.6459 -5.3476 -1.2237 11 6 3.9052 -4.3169 -1.2688 12 6 3.0853 -5.4891 -1.3347 13 7 2.4348 -6.4190 -1.3861 14 7 3.3316 -3.1388 -1.2562 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8589 1.1586 2.4115 18 6 2.6553 -0.7271 3.5861 19 16 2.7223 0.4375 4.9700 20 6 3.3309 -0.6263 6.2359 21 1 3.5396 -1.6629 6.0161 22 6 3.5431 -0.1319 7.5153 23 7 3.2902 1.1319 7.7829 24 14 4.1890 -1.2595 8.8572 25 1 4.3919 -2.6223 8.3034 26 1 5.4813 -0.7340 9.3659 27 1 3.2066 -1.3188 9.9693 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -1.7198 -1.2952 32 1 1.7516 -0.1583 -2.1370 33 1 6.1657 -1.2540 -1.0916 34 1 7.1528 -3.4953 -1.1102 35 1 2.2490 -1.6317 1.1526 36 1 1.9840 -1.5491 3.8351 37 1 3.6536 -1.1193 3.3925 38 1 3.4381 1.4774 8.6771 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107653640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:27 Heat of formation + Delta-G solvation = 68.781050 kcal Electronic energy + Delta-G solvation = -23285.794556 eV Core-core repulsion = 19677.073539 eV Total energy + Delta-G solvation = -3608.721017 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40409 -39.21143 -37.47659 -36.78178 -35.05161 -33.51064 -32.39183 -31.97003 -30.75551 -28.41475 -26.53931 -26.20687 -25.44280 -23.06821 -21.28337 -20.43314 -20.06689 -18.69381 -18.17952 -17.74100 -16.40310 -16.09384 -16.02006 -15.74464 -14.78035 -14.73590 -14.64962 -14.20514 -14.04120 -13.90229 -13.85787 -13.61664 -13.48107 -13.09501 -12.80945 -12.65207 -12.42221 -12.04386 -11.82914 -11.61085 -11.05471 -11.00007 -10.97479 -10.78061 -10.73645 -10.62549 -9.75988 -9.45168 -9.21901 -9.04035 -8.70673 -8.16289 -7.96625 -6.43849 -6.17860 -3.87311 -0.00620 0.92918 1.39723 1.94172 2.24495 2.97313 3.13590 3.22866 3.27594 3.30511 3.31129 3.37292 3.80312 3.87727 4.06375 4.24056 4.55176 4.70407 4.99692 5.16972 5.20410 5.26589 5.34725 5.41137 5.54992 5.69073 5.69524 5.78982 5.82433 5.94306 5.97592 6.21248 6.22859 6.24780 6.35276 6.45778 6.87791 7.22186 7.63164 7.72283 7.90831 8.39064 8.80187 9.27270 10.89634 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.011443 B = 0.003206 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.279253 B = 8732.487315 C =10032.524623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 H 0.091 0.909 4 C 0.033 3.967 5 N -0.504 5.504 6 C 0.334 3.666 7 C -0.175 4.175 8 C 0.107 3.893 9 N -0.623 5.623 10 H 0.424 0.576 11 C 0.498 3.502 12 C 0.253 3.747 13 N -0.332 5.332 14 N -0.517 5.517 15 N -0.727 5.727 16 C 0.534 3.466 17 O -0.519 6.519 18 C -0.151 4.151 19 S -0.058 6.058 20 C -0.534 4.534 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.161 0.839 34 H 0.182 0.818 35 H 0.392 0.608 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.036 -14.255 -23.208 27.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.110 0.890 4 C -0.097 4.097 5 N -0.222 5.222 6 C 0.058 3.942 7 C -0.205 4.205 8 C -0.017 4.017 9 N -0.245 5.245 10 H 0.260 0.740 11 C 0.219 3.781 12 C -0.067 4.067 13 N -0.010 5.010 14 N -0.246 5.246 15 N -0.380 5.380 16 C 0.320 3.680 17 O -0.393 6.393 18 C -0.302 4.302 19 S 0.168 5.832 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.179 0.821 34 H 0.199 0.801 35 H 0.224 0.776 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.802 -12.015 -23.057 26.277 hybrid contribution 1.586 -3.277 0.822 3.732 sum 5.388 -15.292 -22.235 27.519 Atomic orbital electron populations 1.22159 0.95193 1.01957 1.02705 1.20848 0.93287 0.97917 0.83201 0.89046 1.22365 0.88393 1.01228 0.97752 1.73497 1.11871 1.18558 1.18282 1.21133 0.91021 0.86658 0.95422 1.22299 0.93504 0.97482 1.07197 1.21892 0.96442 0.85164 0.98204 1.41932 1.04183 1.11342 1.67068 0.73951 1.16621 0.79903 0.88740 0.92817 1.24367 0.94564 0.91853 0.95961 1.81374 1.05659 1.09445 1.04551 1.69262 1.37573 0.96781 1.20984 1.45954 1.69034 1.13514 1.09511 1.20208 0.76907 0.87195 0.83710 1.90683 1.48620 1.15619 1.84422 1.23511 1.03330 1.04735 0.98618 1.85389 1.86055 1.12875 0.98866 1.22914 1.50577 0.98160 0.96597 0.91032 1.24985 0.95198 0.95506 0.97910 1.70035 1.45692 1.13126 1.21420 0.86131 0.78541 0.80105 0.80785 1.19710 1.20567 1.20582 0.91448 0.91856 0.92693 0.91469 0.89275 0.82131 0.80110 0.77551 0.89619 0.89626 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 2 C 0.15 2.20 2.88 -67.93 -0.20 2.01 16 3 H 0.09 1.54 7.58 -51.93 -0.39 1.14 16 4 C 0.03 0.41 5.91 -4.04 -0.02 0.39 16 5 N -0.50 -6.52 10.34 -59.19 -0.61 -7.13 16 6 C 0.33 3.48 7.60 -155.91 -1.18 2.30 16 7 C -0.18 -1.20 10.29 -37.25 -0.38 -1.58 16 8 C 0.11 0.29 11.28 -16.57 -0.19 0.11 16 9 N -0.62 -1.51 5.31 -12.04 -0.06 -1.58 16 10 H 0.42 -0.46 8.73 -40.82 -0.36 -0.81 16 11 C 0.50 2.97 7.48 -157.24 -1.18 1.80 16 12 C 0.25 1.64 15.62 -22.47 -0.35 1.29 16 13 N -0.33 -2.81 18.54 41.84 0.78 -2.03 16 14 N -0.52 -4.79 8.73 -10.42 -0.09 -4.88 16 15 N -0.73 -11.65 4.80 -53.81 -0.26 -11.91 16 16 C 0.53 10.97 7.81 -10.98 -0.09 10.89 16 17 O -0.52 -12.60 15.52 5.55 0.09 -12.51 16 18 C -0.15 -3.28 6.16 36.01 0.22 -3.06 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 20 C -0.53 -15.55 9.50 30.94 0.29 -15.26 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 24 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.80 6.70 -51.93 -0.35 0.45 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.16 1.02 8.06 -52.48 -0.42 0.59 16 34 H 0.18 -0.24 8.06 -52.49 -0.42 -0.66 16 35 H 0.39 5.63 8.60 -40.82 -0.35 5.28 16 36 H 0.09 1.74 8.14 -51.91 -0.42 1.31 16 37 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 38 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 360.11 15.07 5.43 5.43 Total: -1.00 -38.98 360.11 -8.43 -47.41 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.38 Total: 1.10 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.82 Total: -0.83 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.48 Total: -53.34 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.98 -8.43 -47.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107653640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.188 kcal (2) G-P(sol) polarization free energy of solvation -38.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds