Wall clock time and date at job start Fri Apr 10 2020 14:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 N 1.46501 * 109.47252 * 185.00253 * 4 2 1 6 6 C 1.31904 * 120.00239 * 119.99593 * 5 4 2 7 7 C 1.46877 * 120.57138 * 179.97438 * 6 5 4 8 8 C 1.34957 * 118.30591 * 179.97438 * 7 6 5 9 9 N 1.36658 * 119.28946 * 0.02562 * 8 7 6 10 10 H 0.96995 * 119.43206 * 180.02562 * 9 8 7 11 11 C 1.36210 * 121.13033 * 359.96872 * 9 8 7 12 12 C 1.43197 * 119.06577 * 180.02562 * 11 9 8 13 13 N 6.62902 * 97.84496 * 192.18474 * 2 1 3 14 14 N 1.31037 * 121.86750 * 359.78787 * 11 9 8 15 15 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 16 16 C 1.34777 * 120.00199 * 275.00460 * 15 2 1 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 2 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 2 19 19 S 1.80999 * 109.46903 * 179.72354 * 18 16 15 20 20 C 1.76200 * 99.99730 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00351 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99941 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00384 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46990 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47522 * 119.99735 * 24 22 20 27 27 H 1.48500 * 109.47073 * 240.00101 * 24 22 20 28 28 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 29 29 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 30 30 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46830 * 304.99500 * 4 2 1 32 32 H 1.08994 * 109.47535 * 64.99592 * 4 2 1 33 33 H 1.08004 * 120.84893 * 359.95609 * 7 6 5 34 34 H 1.07996 * 120.35574 * 180.02562 * 8 7 6 35 35 H 0.97000 * 119.99484 * 94.99557 * 15 2 1 36 36 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 37 37 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 38 38 H 0.97002 * 120.00288 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.0767 -2.0126 -1.1990 7 6 5.5395 -2.1326 -1.1412 8 6 6.0811 -3.3686 -1.1520 9 7 5.2589 -4.4583 -1.2162 10 1 5.6459 -5.3476 -1.2237 11 6 3.9052 -4.3169 -1.2688 12 6 3.0853 -5.4891 -1.3347 13 7 2.4348 -6.4190 -1.3861 14 7 3.3316 -3.1388 -1.2562 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8589 1.1586 2.4115 18 6 2.6553 -0.7271 3.5861 19 16 2.7223 0.4375 4.9700 20 6 3.3309 -0.6263 6.2359 21 1 3.5396 -1.6629 6.0161 22 6 3.5431 -0.1319 7.5153 23 7 3.2902 1.1319 7.7829 24 14 4.1890 -1.2595 8.8572 25 1 4.3919 -2.6223 8.3034 26 1 5.4813 -0.7340 9.3659 27 1 3.2066 -1.3188 9.9693 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -1.7198 -1.2952 32 1 1.7516 -0.1583 -2.1370 33 1 6.1657 -1.2540 -1.0916 34 1 7.1528 -3.4953 -1.1102 35 1 2.2490 -1.6317 1.1526 36 1 1.9840 -1.5491 3.8351 37 1 3.6536 -1.1193 3.3925 38 1 3.4381 1.4774 8.6771 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107653640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:26 Heat of formation + Delta-G solvation = 38.866519 kcal Electronic energy + Delta-G solvation = -23287.091748 eV Core-core repulsion = 19677.073539 eV Total energy + Delta-G solvation = -3610.018209 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.93609 -40.73753 -38.16636 -37.67547 -36.03346 -34.58744 -34.14844 -33.09153 -31.71560 -29.99551 -27.66623 -27.33216 -26.76326 -23.79819 -22.43008 -21.51254 -20.96850 -19.85268 -19.20192 -18.68424 -17.95785 -17.19872 -16.88323 -16.77643 -16.59385 -16.33412 -15.95596 -15.18322 -14.90647 -14.76714 -14.62187 -14.51653 -14.43762 -14.27278 -14.20905 -13.82641 -13.61453 -13.26357 -13.16361 -12.92862 -12.90424 -12.64153 -12.52128 -12.03005 -11.71222 -11.36785 -11.22810 -11.15807 -10.91654 -10.28391 -10.22669 -10.06867 -8.67634 -8.59649 -8.34419 -6.13265 -0.57059 0.48540 0.89368 1.25985 1.38613 1.41880 1.46575 1.58074 1.62867 1.68494 2.26149 2.30396 2.52902 2.71805 2.99490 3.27041 3.32263 3.58845 3.85851 4.01183 4.16091 4.20508 4.25560 4.30997 4.43314 4.48495 4.64780 4.73768 4.82529 4.87063 5.03990 5.11327 5.25622 5.41209 5.48016 5.55361 5.81895 6.09191 6.19825 6.47876 6.67336 7.06206 7.06283 7.24439 8.75275 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.011443 B = 0.003206 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.279253 B = 8732.487315 C =10032.524623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.151 3.849 3 H 0.061 0.939 4 C 0.050 3.950 5 N -0.571 5.571 6 C 0.343 3.657 7 C -0.222 4.222 8 C 0.156 3.844 9 N -0.595 5.595 10 H 0.447 0.553 11 C 0.509 3.491 12 C 0.276 3.724 13 N -0.362 5.362 14 N -0.554 5.554 15 N -0.702 5.702 16 C 0.534 3.466 17 O -0.564 6.564 18 C -0.125 4.125 19 S -0.146 6.146 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.002 2.998 25 H -0.256 1.256 26 H -0.271 1.271 27 H -0.274 1.274 28 H 0.037 0.963 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.160 0.840 34 H 0.237 0.763 35 H 0.403 0.597 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.275 -18.114 -23.852 31.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.046 3.954 3 H 0.079 0.921 4 C -0.081 4.081 5 N -0.293 5.293 6 C 0.069 3.931 7 C -0.252 4.252 8 C 0.031 3.969 9 N -0.218 5.218 10 H 0.288 0.712 11 C 0.231 3.769 12 C -0.044 4.044 13 N -0.040 5.040 14 N -0.284 5.284 15 N -0.354 5.354 16 C 0.320 3.680 17 O -0.443 6.443 18 C -0.276 4.276 19 S 0.081 5.919 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.823 3.177 25 H -0.180 1.180 26 H -0.197 1.197 27 H -0.199 1.199 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.178 0.822 34 H 0.254 0.746 35 H 0.238 0.762 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.064 -15.993 -23.753 29.271 hybrid contribution 1.023 -2.303 0.862 2.663 sum 7.088 -18.296 -22.892 30.150 Atomic orbital electron populations 1.22086 0.93966 1.02742 1.02443 1.20989 0.94189 0.96580 0.83596 0.92114 1.22095 0.89253 1.00670 0.96048 1.73531 1.11321 1.20105 1.24347 1.21596 0.92576 0.86346 0.92622 1.22381 0.91901 0.99494 1.11418 1.22675 0.98295 0.83406 0.92502 1.42105 1.02975 1.12927 1.63753 0.71166 1.16532 0.81131 0.87719 0.91500 1.24262 0.93861 0.91306 0.95000 1.81415 1.06425 1.10678 1.05465 1.69186 1.38599 0.97413 1.23245 1.45736 1.67245 1.13786 1.08617 1.20053 0.76791 0.86626 0.84529 1.90669 1.50968 1.17485 1.85141 1.23322 1.04895 1.03130 0.96301 1.85596 1.86531 1.17107 1.02682 1.23225 1.50842 0.98398 0.96983 0.90038 1.26159 0.95045 0.97242 1.00696 1.70199 1.46804 1.15471 1.22318 0.84872 0.77897 0.78130 0.76810 1.18000 1.19670 1.19947 0.94335 0.89464 0.91272 0.91268 0.89024 0.82219 0.74644 0.76248 0.87825 0.87847 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.48 71.98 0.68 -3.34 16 2 C 0.15 4.52 2.88 44.99 0.13 4.65 16 3 H 0.06 2.20 7.58 -2.39 -0.02 2.18 16 4 C 0.05 1.26 5.91 86.38 0.51 1.77 16 5 N -0.57 -15.10 10.34 -341.18 -3.53 -18.63 16 6 C 0.34 6.83 7.60 136.53 1.04 7.87 16 7 C -0.22 -2.53 10.29 23.78 0.24 -2.29 16 8 C 0.16 0.09 11.28 83.19 0.94 1.02 16 9 N -0.60 -0.08 5.31 -192.00 -1.02 -1.10 16 10 H 0.45 -3.49 8.73 -92.71 -0.81 -4.30 16 11 C 0.51 4.57 7.48 135.43 1.01 5.58 16 12 C 0.28 2.90 15.62 88.33 1.38 4.28 16 13 N -0.36 -5.43 18.54 19.00 0.35 -5.08 16 14 N -0.55 -9.37 8.73 -186.88 -1.63 -11.00 16 15 N -0.70 -22.82 4.80 -442.54 -2.12 -24.95 16 16 C 0.53 22.56 7.81 87.66 0.68 23.24 16 17 O -0.56 -28.86 15.52 -3.04 -0.05 -28.90 16 18 C -0.13 -5.45 6.16 71.24 0.44 -5.01 16 19 S -0.15 -8.48 20.57 -56.49 -1.16 -9.65 16 20 C -0.55 -31.96 9.50 67.95 0.65 -31.31 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.76 5.49 84.86 0.47 1.23 16 23 N -0.91 -56.82 13.22 21.65 0.29 -56.54 16 24 Si 1.00 43.88 29.55 68.60 2.03 45.90 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 28 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.63 6.70 -2.38 -0.02 1.61 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.24 -2.33 8.06 -2.91 -0.02 -2.35 16 35 H 0.40 11.36 8.60 -92.71 -0.80 10.56 16 36 H 0.10 4.12 8.14 -2.39 -0.02 4.10 16 37 H 0.10 4.11 8.14 -2.40 -0.02 4.09 16 38 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -90.90 360.11 0.85 -90.05 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -0.48 Total: 12.19 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 8.17 Total: 7.70 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -7.66 Total: -117.30 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.05 Total: -28.90 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.65 kcal Total: -90.90 0.85 -90.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107653640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.915 kcal (2) G-P(sol) polarization free energy of solvation -90.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds