Wall clock time and date at job start Fri Apr 10 2020 14:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47106 * 2 1 4 4 C 1.53004 * 109.46819 * 119.99758 * 2 1 3 5 5 N 1.46495 * 109.46970 * 175.00117 * 4 2 1 6 6 C 1.38567 * 119.99914 * 180.02562 * 5 4 2 7 7 C 1.39748 * 119.98085 * 0.02562 * 6 5 4 8 8 N 1.31550 * 120.03195 * 180.02562 * 7 6 5 9 9 C 1.33303 * 119.99316 * 359.97438 * 8 7 6 10 10 C 1.43199 * 120.02154 * 179.97438 * 9 8 7 11 11 N 8.92027 * 125.91247 * 121.74336 * 2 1 3 12 12 C 1.39522 * 119.96085 * 359.97438 * 9 8 7 13 13 N 1.32029 * 119.96769 * 0.02562 * 12 9 8 14 14 N 1.46499 * 109.47003 * 239.99432 * 2 1 3 15 15 C 1.34773 * 120.00173 * 85.00611 * 14 2 1 16 16 O 1.21293 * 119.99714 * 359.97438 * 15 14 2 17 17 C 1.50694 * 120.00289 * 180.02562 * 15 14 2 18 18 S 1.81007 * 109.47057 * 179.97438 * 17 15 14 19 19 C 1.76210 * 99.99728 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99960 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99648 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00021 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99860 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47037 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47156 * 120.00063 * 23 21 19 26 26 H 1.48505 * 109.47120 * 240.00274 * 23 21 19 27 27 H 1.09003 * 109.47438 * 300.00841 * 1 2 3 28 28 H 1.09000 * 109.47179 * 60.00010 * 1 2 3 29 29 H 1.09000 * 109.47539 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47363 * 54.99809 * 4 2 1 31 31 H 1.09006 * 109.47011 * 294.99996 * 4 2 1 32 32 H 0.96996 * 120.00253 * 359.97438 * 5 4 2 33 33 H 1.08000 * 119.98802 * 359.97438 * 7 6 5 34 34 H 1.08001 * 120.01627 * 180.02562 * 12 9 8 35 35 H 0.97004 * 119.99810 * 264.99766 * 14 2 1 36 36 H 1.09005 * 109.47026 * 299.99106 * 17 15 14 37 37 H 1.08993 * 109.47458 * 59.99923 * 17 15 14 38 38 H 0.97001 * 120.00046 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4999 -0.8264 1.1907 6 6 4.1918 -1.4461 2.2190 7 6 3.4963 -1.9711 3.3115 8 7 4.1521 -2.5592 4.2885 9 6 5.4807 -2.6549 4.2364 10 6 6.1952 -3.2945 5.2998 11 7 6.7622 -3.8010 6.1439 12 6 6.1746 -2.1316 3.1450 13 7 5.5149 -1.5416 2.1652 14 7 2.0183 -0.6907 -1.1961 15 6 2.1471 -0.0185 -2.3571 16 8 1.8583 1.1583 -2.4117 17 6 2.6488 -0.7291 -3.5876 18 16 2.7093 0.4337 -4.9734 19 6 3.3126 -0.6317 -6.2407 20 1 3.5218 -1.6681 -6.0206 21 6 3.5179 -0.1390 -7.5219 22 7 3.2624 1.1240 -7.7902 23 14 4.1567 -1.2686 -8.8656 24 1 4.3627 -2.6306 -8.3108 25 1 3.1684 -1.3297 -9.9723 26 1 5.4463 -0.7436 -9.3819 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6053 -1.7198 1.2953 31 1 1.7515 -0.1582 2.1370 32 1 3.9823 -0.4628 0.4318 33 1 2.4199 -1.8933 3.3542 34 1 7.2510 -2.2090 3.1016 35 1 2.2490 -1.6319 -1.1524 36 1 3.6480 -1.1217 -3.3985 37 1 1.9759 -1.5508 -3.8324 38 1 3.4062 1.4684 -8.6856 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108254874.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:49 Heat of formation + Delta-G solvation = 46.621729 kcal Electronic energy + Delta-G solvation = -22615.624882 eV Core-core repulsion = 19005.942964 eV Total energy + Delta-G solvation = -3609.681918 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.65305 -39.73339 -37.71219 -36.79108 -35.20321 -34.37666 -32.48778 -31.88419 -30.74890 -28.73248 -27.00539 -25.55750 -25.42554 -24.14136 -22.00746 -20.53983 -20.05061 -18.73075 -17.94149 -17.86713 -16.78351 -16.45200 -15.86984 -15.67274 -15.22062 -15.10663 -14.85786 -14.69448 -14.49348 -14.03368 -13.56226 -13.43519 -13.30750 -13.23226 -13.16387 -12.99617 -12.63793 -12.22836 -12.11320 -11.97454 -11.90875 -11.40808 -11.11477 -11.08249 -10.81428 -10.78680 -9.87194 -9.74477 -9.57158 -9.20685 -9.11772 -8.51016 -8.31604 -6.57324 -6.27784 -3.98909 0.08057 0.58980 2.14951 2.26339 2.46244 2.86564 2.91350 3.14793 3.17683 3.23213 3.27623 3.41668 3.56243 3.79113 3.89912 4.04727 4.14509 4.18478 4.53595 4.57898 4.81700 4.92098 4.93316 5.01587 5.07937 5.12510 5.36165 5.46504 5.52413 5.73658 5.77778 5.92962 6.04099 6.06265 6.39014 6.71011 6.79271 7.07693 7.29647 7.47039 7.54467 8.29488 8.41939 9.18068 10.79637 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.016358 B = 0.002264 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.311305 B =12365.796341 C =13713.588134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 H 0.099 0.901 4 C 0.108 3.892 5 N -0.695 5.695 6 C 0.385 3.615 7 C 0.003 3.997 8 N -0.366 5.366 9 C 0.050 3.950 10 C 0.280 3.720 11 N -0.401 5.401 12 C 0.174 3.826 13 N -0.501 5.501 14 N -0.739 5.739 15 C 0.535 3.465 16 O -0.512 6.512 17 C -0.155 4.155 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.279 1.279 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.418 0.582 33 H 0.176 0.824 34 H 0.180 0.820 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 -6.236 21.575 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.028 3.972 3 H 0.117 0.883 4 C -0.016 4.016 5 N -0.325 5.325 6 C 0.142 3.858 7 C -0.171 4.171 8 N -0.081 5.081 9 C -0.091 4.091 10 C -0.037 4.037 11 N -0.079 5.079 12 C 0.009 3.991 13 N -0.223 5.223 14 N -0.395 5.395 15 C 0.321 3.679 16 O -0.386 6.386 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.256 0.744 33 H 0.193 0.807 34 H 0.197 0.803 35 H 0.234 0.766 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.875 -4.860 22.633 23.225 hybrid contribution 0.743 -2.191 -1.475 2.744 sum -1.132 -7.051 21.158 22.331 Atomic orbital electron populations 1.22133 0.93707 1.02723 1.03551 1.21096 0.95197 0.98033 0.82922 0.88346 1.22058 0.78243 1.02004 0.99317 1.44677 1.06676 1.59466 1.21697 1.19657 0.89442 0.88289 0.88380 1.23143 1.01421 1.01937 0.90643 1.68072 1.06790 1.08393 1.24827 1.16899 0.90054 1.07779 0.94342 1.24639 0.93435 0.93263 0.92396 1.81277 1.08714 1.08988 1.08876 1.23467 1.01323 0.87968 0.86337 1.68172 1.06393 1.19809 1.27919 1.46150 1.69810 1.14077 1.09467 1.20354 0.76650 0.87205 0.83680 1.90722 1.47893 1.15717 1.84256 1.23541 1.03719 1.04962 0.98321 1.85403 1.86337 1.12771 0.98766 1.22897 1.51031 0.98166 0.96312 0.90857 1.24996 0.95046 0.95558 0.97992 1.70019 1.45486 1.13218 1.21497 0.86112 0.78557 0.80118 0.80688 1.19612 1.20552 1.20520 0.91336 0.90783 0.92025 0.90102 0.89287 0.74412 0.80666 0.80303 0.76641 0.89166 0.89170 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.48 37.16 0.35 -0.78 16 2 C 0.13 0.98 2.73 -67.93 -0.19 0.79 16 3 H 0.10 0.93 7.58 -51.93 -0.39 0.53 16 4 C 0.11 0.44 4.45 -4.04 -0.02 0.42 16 5 N -0.70 -4.16 5.54 -60.28 -0.33 -4.50 16 6 C 0.39 2.70 7.66 -154.90 -1.19 1.52 16 7 C 0.00 0.02 10.48 -17.11 -0.18 -0.16 16 8 N -0.37 -3.03 10.41 -10.72 -0.11 -3.14 16 9 C 0.05 0.39 6.59 -84.82 -0.56 -0.16 16 10 C 0.28 2.58 15.56 -22.47 -0.35 2.23 16 11 N -0.40 -4.50 18.54 41.84 0.78 -3.72 16 12 C 0.17 1.18 10.92 -16.99 -0.19 0.99 16 13 N -0.50 -4.13 10.52 -11.93 -0.13 -4.25 16 14 N -0.74 -7.19 4.52 -53.81 -0.24 -7.43 16 15 C 0.53 8.43 7.81 -10.99 -0.09 8.34 16 16 O -0.51 -10.18 15.53 5.55 0.09 -10.10 16 17 C -0.15 -2.82 6.16 36.00 0.22 -2.60 16 18 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 19 C -0.54 -14.75 9.50 30.94 0.29 -14.45 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 22 N -0.87 -25.50 13.22 55.49 0.73 -24.77 16 23 Si 0.92 20.90 29.55 -169.99 -5.02 15.88 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.20 7.93 -51.93 -0.41 -0.21 16 31 H 0.09 0.21 7.93 -51.93 -0.41 -0.20 16 32 H 0.42 3.11 8.26 -40.82 -0.34 2.77 16 33 H 0.18 0.58 6.71 -52.49 -0.35 0.23 16 34 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.40 2.97 8.60 -40.82 -0.35 2.62 16 36 H 0.09 1.52 8.14 -51.91 -0.42 1.10 16 37 H 0.09 1.53 8.14 -51.92 -0.42 1.10 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 358.45 15.07 5.40 5.40 Total: -1.00 -35.36 358.45 -7.37 -42.72 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.34 Total: -0.44 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.98 Total: -1.92 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.69 Total: -47.81 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.36 -7.37 -42.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108254874.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.347 kcal (2) G-P(sol) polarization free energy of solvation -35.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds