Wall clock time and date at job start Fri Apr 10 2020 14:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47212 * 2 1 4 4 O 1.42901 * 109.47090 * 240.00219 * 2 1 3 5 5 C 1.52994 * 109.47147 * 120.00121 * 2 1 3 6 6 C 1.53007 * 109.47132 * 186.90051 * 5 2 1 7 7 H 1.08992 * 109.70733 * 62.43762 * 6 5 2 8 8 C 1.53300 * 109.67955 * 301.90248 * 6 5 2 9 9 O 1.42965 * 109.22136 * 187.97616 * 8 6 5 10 10 C 1.42965 * 114.16496 * 62.57741 * 9 8 6 11 11 C 1.53705 * 109.15162 * 297.28942 * 10 9 8 12 12 N 1.47154 * 109.68072 * 182.97834 * 6 5 2 13 13 S 1.65602 * 120.98320 * 350.23216 * 12 6 5 14 14 O 1.42105 * 104.27456 * 323.89821 * 13 12 6 15 15 O 1.42102 * 104.27694 * 196.04016 * 13 12 6 16 16 C 1.81399 * 104.44851 * 79.96996 * 13 12 6 17 17 C 1.53008 * 109.46831 * 180.02562 * 16 13 12 18 18 C 1.53000 * 109.46823 * 179.97438 * 17 16 13 19 19 C 1.50701 * 109.47046 * 180.02562 * 18 17 16 20 20 H 1.07993 * 119.99573 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99888 * 180.27893 * 19 18 17 22 22 N 1.31510 * 119.99995 * 179.72253 * 21 19 18 23 23 Si 1.86803 * 119.99983 * 359.71733 * 21 19 18 24 24 H 1.48499 * 109.47067 * 90.00662 * 23 21 19 25 25 H 1.48500 * 109.46794 * 210.00048 * 23 21 19 26 26 H 1.48491 * 109.47313 * 330.00304 * 23 21 19 27 27 H 1.08999 * 109.47013 * 299.99995 * 1 2 3 28 28 H 1.08998 * 109.47262 * 60.00243 * 1 2 3 29 29 H 1.09005 * 109.46972 * 179.97438 * 1 2 3 30 30 H 0.96708 * 113.99996 * 299.99318 * 4 2 1 31 31 H 1.09000 * 109.47490 * 66.90195 * 5 2 1 32 32 H 1.08999 * 109.47200 * 306.89599 * 5 2 1 33 33 H 1.09000 * 109.51226 * 307.89902 * 8 6 5 34 34 H 1.08992 * 109.51186 * 68.05124 * 8 6 5 35 35 H 1.09001 * 109.51079 * 57.34481 * 10 9 8 36 36 H 1.09003 * 109.50801 * 177.49255 * 10 9 8 37 37 H 1.08996 * 109.83908 * 292.85945 * 11 10 9 38 38 H 1.09003 * 109.75106 * 172.16547 * 11 10 9 39 39 H 1.08999 * 109.47062 * 59.99992 * 16 13 12 40 40 H 1.09000 * 109.46998 * 300.00016 * 16 13 12 41 41 H 1.09000 * 109.46864 * 59.99893 * 17 16 13 42 42 H 1.08999 * 109.46845 * 300.00051 * 17 16 13 43 43 H 1.08999 * 109.47035 * 59.99962 * 18 17 16 44 44 H 1.09000 * 109.47033 * 299.99980 * 18 17 16 45 45 H 0.96998 * 120.00109 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5602 -0.5729 1.3388 7 1 3.8212 0.4803 1.4421 8 6 4.2102 -1.1443 0.0735 9 8 5.6293 -1.1719 0.2447 10 6 6.0741 -2.0170 1.3086 11 6 5.5198 -1.4856 2.6401 12 7 4.0639 -1.3246 2.4993 13 16 3.0234 -1.9645 3.6175 14 8 1.9772 -1.0073 3.7106 15 8 3.8488 -2.2590 4.7361 16 6 2.4203 -3.4941 2.8512 17 6 1.4379 -4.1860 3.7984 18 6 0.9287 -5.4759 3.1519 19 6 -0.0394 -6.1570 4.0845 20 1 -0.2682 -5.7145 5.0426 21 6 -0.6281 -7.3484 3.7171 22 7 -1.4688 -7.9457 4.5332 23 14 -0.2317 -8.1142 2.0599 24 1 0.9359 -9.0210 2.2003 25 1 -1.4044 -8.8880 1.5791 26 1 0.0884 -7.0425 1.0833 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7210 -1.5953 -1.2329 31 1 1.7810 -1.7784 1.1896 32 1 1.5794 -0.2836 2.1349 33 1 3.8444 -2.1566 -0.0984 34 1 3.9587 -0.5156 -0.7806 35 1 5.7150 -3.0325 1.1412 36 1 7.1635 -2.0163 1.3429 37 1 5.9748 -0.5227 2.8722 38 1 5.7351 -2.1959 3.4384 39 1 3.2622 -4.1573 2.6524 40 1 1.9156 -3.2569 1.9147 41 1 0.5961 -3.5226 3.9968 42 1 1.9422 -4.4232 4.7351 43 1 1.7703 -6.1394 2.9531 44 1 0.4243 -5.2382 2.2153 45 1 -1.8833 -8.7836 4.2746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152896477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:30 Heat of formation + Delta-G solvation = -164.674171 kcal Electronic energy + Delta-G solvation = -27263.730295 eV Core-core repulsion = 23408.824572 eV Total energy + Delta-G solvation = -3854.905723 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -39.96803 -38.06374 -37.16563 -36.00352 -35.20610 -34.93711 -32.82328 -32.27743 -31.05880 -28.52119 -27.90392 -26.31567 -23.76749 -23.67664 -21.82965 -21.58073 -20.36061 -19.01229 -17.80843 -17.15069 -16.89777 -16.74903 -16.28674 -15.87950 -15.83605 -15.48423 -15.16316 -15.04583 -14.56669 -14.46992 -14.25165 -13.82605 -13.16459 -13.03432 -12.86587 -12.50272 -12.40019 -12.27441 -12.17341 -12.07318 -12.02289 -11.90447 -11.73728 -11.64259 -11.26200 -11.07743 -11.01068 -10.89998 -10.61893 -10.42936 -10.17318 -10.07064 -9.93673 -9.66301 -9.34340 -8.95262 -8.65063 -6.14459 -4.14258 0.22307 2.47401 3.21046 3.28812 3.29930 3.61608 3.75854 3.98306 4.06984 4.25500 4.34147 4.43673 4.52995 4.65809 4.80630 4.85289 4.92152 4.93968 5.00903 5.07124 5.10408 5.18938 5.23942 5.30494 5.53656 5.55047 5.57633 5.64407 5.70931 5.83388 5.87556 5.96294 6.02953 6.10036 6.17995 6.31425 6.56898 6.92671 7.03409 7.17386 7.32003 7.64041 8.41001 8.89655 9.46363 10.98808 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.004261 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.159090 B = 6569.302838 C = 7194.030707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.113 3.887 3 H 0.104 0.896 4 O -0.565 6.565 5 C -0.227 4.227 6 C 0.132 3.868 7 H 0.086 0.914 8 C 0.049 3.951 9 O -0.381 6.381 10 C 0.045 3.955 11 C 0.086 3.914 12 N -1.005 6.005 13 S 2.600 3.400 14 O -0.953 6.953 15 O -0.957 6.957 16 C -0.620 4.620 17 C -0.097 4.097 18 C -0.003 4.003 19 C -0.529 4.529 20 H 0.075 0.925 21 C 0.069 3.931 22 N -0.899 5.899 23 Si 0.880 3.120 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.267 1.267 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.376 0.624 31 H 0.074 0.926 32 H 0.146 0.854 33 H 0.052 0.948 34 H 0.129 0.871 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.015 0.985 44 H 0.019 0.981 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.071 15.894 -10.927 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.054 3.946 3 H 0.122 0.878 4 O -0.372 6.372 5 C -0.265 4.265 6 C 0.026 3.974 7 H 0.104 0.896 8 C -0.029 4.029 9 O -0.299 6.299 10 C -0.034 4.034 11 C -0.040 4.040 12 N -0.843 5.843 13 S 2.698 3.302 14 O -0.943 6.943 15 O -0.948 6.948 16 C -0.751 4.751 17 C -0.136 4.136 18 C -0.042 4.042 19 C -0.567 4.567 20 H 0.093 0.907 21 C -0.133 4.133 22 N -0.537 5.537 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.191 1.191 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.092 0.908 32 H 0.164 0.836 33 H 0.070 0.930 34 H 0.147 0.853 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.034 0.966 44 H 0.037 0.963 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.177 16.830 -10.260 23.169 hybrid contribution -0.331 -1.808 -0.979 2.083 sum 11.846 15.021 -11.240 22.188 Atomic orbital electron populations 1.22485 0.95615 1.03242 1.03086 1.21767 0.93445 0.96523 0.82904 0.87843 1.86545 1.76362 1.29605 1.44643 1.23825 0.94764 1.03466 1.04461 1.21603 0.93322 0.96776 0.85688 0.89631 1.23463 0.80233 1.01602 0.97605 1.87980 1.22315 1.67537 1.52037 1.23058 1.00111 0.93686 0.86543 1.22209 0.79471 1.03261 0.99026 1.58064 1.16619 1.68730 1.40900 1.05405 0.73849 0.76899 0.74036 1.93454 1.57549 1.57816 1.85470 1.93554 1.66941 1.86130 1.48147 1.30852 1.11304 1.20192 1.12731 1.21322 0.96015 0.99579 0.96675 1.19517 0.96308 0.91652 0.96678 1.21114 1.24697 1.06627 1.04214 0.90719 1.25017 0.94596 0.96724 0.96969 1.69903 1.29571 1.17864 1.36388 0.86788 0.78129 0.79596 0.84803 1.20193 1.21191 1.19136 0.90942 0.91658 0.91874 0.77537 0.90782 0.83618 0.93015 0.85338 0.92603 0.87856 0.90319 0.87843 0.85421 0.85431 0.90936 0.90996 0.96646 0.96259 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.50 9.53 37.16 0.35 -1.15 16 2 C 0.11 0.91 3.43 -26.73 -0.09 0.81 16 3 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 4 O -0.56 -4.41 9.97 -35.23 -0.35 -4.76 16 5 C -0.23 -2.20 3.30 -26.73 -0.09 -2.29 16 6 C 0.13 1.31 3.17 -67.41 -0.21 1.10 16 7 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 8 C 0.05 0.46 4.97 37.31 0.19 0.64 16 9 O -0.38 -4.05 10.74 -35.23 -0.38 -4.43 16 10 C 0.04 0.39 7.00 37.52 0.26 0.65 16 11 C 0.09 0.84 6.59 -3.32 -0.02 0.82 16 12 N -1.01 -11.27 3.26 -105.79 -0.34 -11.61 16 13 S 2.60 36.45 4.85 -107.50 -0.52 35.93 16 14 O -0.95 -14.90 14.18 -57.54 -0.82 -15.71 16 15 O -0.96 -16.16 16.49 -57.54 -0.95 -17.11 16 16 C -0.62 -8.61 5.95 37.16 0.22 -8.39 16 17 C -0.10 -1.81 5.16 -26.73 -0.14 -1.95 16 18 C 0.00 -0.07 4.04 -27.88 -0.11 -0.18 16 19 C -0.53 -14.72 9.66 -34.44 -0.33 -15.05 16 20 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 22 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 23 Si 0.88 20.97 27.46 -169.99 -4.67 16.30 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -5.99 6.55 56.52 0.37 -5.62 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.38 2.09 9.05 45.56 0.41 2.50 16 31 H 0.07 0.69 5.15 -51.93 -0.27 0.42 16 32 H 0.15 1.69 5.17 -52.15 -0.27 1.42 16 33 H 0.05 0.46 8.13 -51.93 -0.42 0.04 16 34 H 0.13 1.17 5.99 -51.93 -0.31 0.85 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.99 6.93 -51.93 -0.36 0.63 16 39 H 0.13 1.56 8.14 -51.92 -0.42 1.13 16 40 H 0.13 1.50 5.65 -51.92 -0.29 1.21 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.02 0.34 7.56 -51.93 -0.39 -0.06 16 44 H 0.02 0.42 7.21 -51.93 -0.37 0.05 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -34.49 356.67 -8.47 -42.96 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.52 Total: 2.63 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -0.07 Total: -23.11 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.43 Total: -38.08 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -2.49 Total: -42.01 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Atomic # 16 Polarization: 36.45 SS G_CDS: -0.52 Total: 35.93 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.49 -8.47 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152896477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.714 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds