Wall clock time and date at job start Fri Apr 10 2020 14:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47212 * 2 1 4 4 O 1.42901 * 109.47090 * 240.00219 * 2 1 3 5 5 C 1.52994 * 109.47147 * 120.00121 * 2 1 3 6 6 C 1.53007 * 109.47132 * 186.90051 * 5 2 1 7 7 H 1.08992 * 109.70733 * 62.43762 * 6 5 2 8 8 C 1.53300 * 109.67955 * 301.90248 * 6 5 2 9 9 O 1.42965 * 109.22136 * 187.97616 * 8 6 5 10 10 C 1.42965 * 114.16496 * 62.57741 * 9 8 6 11 11 C 1.53705 * 109.15162 * 297.28942 * 10 9 8 12 12 N 1.47154 * 109.68072 * 182.97834 * 6 5 2 13 13 S 1.65602 * 120.98320 * 350.23216 * 12 6 5 14 14 O 1.42105 * 104.27456 * 323.89821 * 13 12 6 15 15 O 1.42102 * 104.27694 * 196.04016 * 13 12 6 16 16 C 1.81399 * 104.44851 * 79.96996 * 13 12 6 17 17 C 1.53008 * 109.46831 * 180.02562 * 16 13 12 18 18 C 1.53000 * 109.46823 * 179.97438 * 17 16 13 19 19 C 1.50701 * 109.47046 * 180.02562 * 18 17 16 20 20 H 1.07993 * 119.99573 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99888 * 180.27893 * 19 18 17 22 22 N 1.31510 * 119.99995 * 179.72253 * 21 19 18 23 23 Si 1.86803 * 119.99983 * 359.71733 * 21 19 18 24 24 H 1.48499 * 109.47067 * 90.00662 * 23 21 19 25 25 H 1.48500 * 109.46794 * 210.00048 * 23 21 19 26 26 H 1.48491 * 109.47313 * 330.00304 * 23 21 19 27 27 H 1.08999 * 109.47013 * 299.99995 * 1 2 3 28 28 H 1.08998 * 109.47262 * 60.00243 * 1 2 3 29 29 H 1.09005 * 109.46972 * 179.97438 * 1 2 3 30 30 H 0.96708 * 113.99996 * 299.99318 * 4 2 1 31 31 H 1.09000 * 109.47490 * 66.90195 * 5 2 1 32 32 H 1.08999 * 109.47200 * 306.89599 * 5 2 1 33 33 H 1.09000 * 109.51226 * 307.89902 * 8 6 5 34 34 H 1.08992 * 109.51186 * 68.05124 * 8 6 5 35 35 H 1.09001 * 109.51079 * 57.34481 * 10 9 8 36 36 H 1.09003 * 109.50801 * 177.49255 * 10 9 8 37 37 H 1.08996 * 109.83908 * 292.85945 * 11 10 9 38 38 H 1.09003 * 109.75106 * 172.16547 * 11 10 9 39 39 H 1.08999 * 109.47062 * 59.99992 * 16 13 12 40 40 H 1.09000 * 109.46998 * 300.00016 * 16 13 12 41 41 H 1.09000 * 109.46864 * 59.99893 * 17 16 13 42 42 H 1.08999 * 109.46845 * 300.00051 * 17 16 13 43 43 H 1.08999 * 109.47035 * 59.99962 * 18 17 16 44 44 H 1.09000 * 109.47033 * 299.99980 * 18 17 16 45 45 H 0.96998 * 120.00109 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5602 -0.5729 1.3388 7 1 3.8212 0.4803 1.4421 8 6 4.2102 -1.1443 0.0735 9 8 5.6293 -1.1719 0.2447 10 6 6.0741 -2.0170 1.3086 11 6 5.5198 -1.4856 2.6401 12 7 4.0639 -1.3246 2.4993 13 16 3.0234 -1.9645 3.6175 14 8 1.9772 -1.0073 3.7106 15 8 3.8488 -2.2590 4.7361 16 6 2.4203 -3.4941 2.8512 17 6 1.4379 -4.1860 3.7984 18 6 0.9287 -5.4759 3.1519 19 6 -0.0394 -6.1570 4.0845 20 1 -0.2682 -5.7145 5.0426 21 6 -0.6281 -7.3484 3.7171 22 7 -1.4688 -7.9457 4.5332 23 14 -0.2317 -8.1142 2.0599 24 1 0.9359 -9.0210 2.2003 25 1 -1.4044 -8.8880 1.5791 26 1 0.0884 -7.0425 1.0833 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7210 -1.5953 -1.2329 31 1 1.7810 -1.7784 1.1896 32 1 1.5794 -0.2836 2.1349 33 1 3.8444 -2.1566 -0.0984 34 1 3.9587 -0.5156 -0.7806 35 1 5.7150 -3.0325 1.1412 36 1 7.1635 -2.0163 1.3429 37 1 5.9748 -0.5227 2.8722 38 1 5.7351 -2.1959 3.4384 39 1 3.2622 -4.1573 2.6524 40 1 1.9156 -3.2569 1.9147 41 1 0.5961 -3.5226 3.9968 42 1 1.9422 -4.4232 4.7351 43 1 1.7703 -6.1394 2.9531 44 1 0.4243 -5.2382 2.2153 45 1 -1.8833 -8.7836 4.2746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152896477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:29 Heat of formation + Delta-G solvation = -192.409925 kcal Electronic energy + Delta-G solvation = -27264.933007 eV Core-core repulsion = 23408.824572 eV Total energy + Delta-G solvation = -3856.108435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.70951 -38.84847 -38.18812 -37.17890 -36.57087 -36.02041 -34.30582 -33.50947 -31.70771 -30.23934 -28.65538 -27.07989 -25.45415 -24.38255 -22.70525 -22.50045 -21.77650 -20.03060 -19.04235 -18.70641 -17.91437 -17.51264 -17.39938 -16.77996 -16.58855 -16.28857 -16.21627 -16.17162 -15.77977 -15.64066 -15.33811 -14.88939 -14.56472 -14.18954 -13.90467 -13.73705 -13.54277 -13.31784 -13.28020 -13.27377 -13.07910 -12.84050 -12.72916 -12.64942 -12.58035 -12.39676 -11.93615 -11.84597 -11.77346 -11.63902 -11.45148 -11.42516 -11.30249 -10.97342 -10.79287 -10.72865 -9.78594 -8.31311 -6.37587 -0.88640 1.35697 1.37800 1.48993 1.49570 2.34669 2.67278 2.94317 3.01968 3.04125 3.26101 3.57110 3.57894 3.74271 3.78017 3.92438 3.97658 4.12791 4.21951 4.27111 4.31783 4.36427 4.44050 4.51959 4.56716 4.64234 4.78859 4.83125 4.88836 4.92369 4.93125 5.01363 5.10348 5.22514 5.29640 5.32388 5.37031 5.42034 5.50662 5.60410 6.23276 6.24481 6.70806 6.85328 7.27283 8.85693 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.004261 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.159090 B = 6569.302838 C = 7194.030707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.121 3.879 3 H 0.109 0.891 4 O -0.568 6.568 5 C -0.227 4.227 6 C 0.131 3.869 7 H 0.087 0.913 8 C 0.052 3.948 9 O -0.395 6.395 10 C 0.044 3.956 11 C 0.078 3.922 12 N -0.999 5.999 13 S 2.612 3.388 14 O -0.974 6.974 15 O -0.990 6.990 16 C -0.613 4.613 17 C -0.101 4.101 18 C -0.003 4.003 19 C -0.544 4.544 20 H 0.029 0.971 21 C 0.003 3.997 22 N -0.952 5.952 23 Si 0.953 3.047 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.236 1.236 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.387 0.613 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.133 0.867 35 H 0.064 0.936 36 H 0.125 0.875 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.035 0.965 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.769 16.086 -14.076 25.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.062 3.938 3 H 0.127 0.873 4 O -0.376 6.376 5 C -0.266 4.266 6 C 0.026 3.974 7 H 0.105 0.895 8 C -0.025 4.025 9 O -0.314 6.314 10 C -0.034 4.034 11 C -0.047 4.047 12 N -0.839 5.839 13 S 2.711 3.289 14 O -0.964 6.964 15 O -0.980 6.980 16 C -0.744 4.744 17 C -0.140 4.140 18 C -0.041 4.041 19 C -0.582 4.582 20 H 0.048 0.952 21 C -0.194 4.194 22 N -0.592 5.592 23 Si 0.775 3.225 24 H -0.191 1.191 25 H -0.212 1.212 26 H -0.159 1.159 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.237 0.763 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.151 0.849 35 H 0.082 0.918 36 H 0.143 0.857 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.170 0.830 40 H 0.172 0.828 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.885 17.041 -13.401 25.744 hybrid contribution -0.869 -1.809 0.090 2.009 sum 13.016 15.232 -13.311 24.054 Atomic orbital electron populations 1.22489 0.95739 1.03125 1.03119 1.21660 0.93214 0.96650 0.82294 0.87301 1.86530 1.76399 1.30564 1.44153 1.23785 0.94504 1.03790 1.04483 1.21739 0.93511 0.96751 0.85437 0.89537 1.23484 0.79795 1.02201 0.97034 1.87967 1.22833 1.68052 1.52540 1.23204 1.01376 0.93634 0.85197 1.22427 0.78404 1.03837 1.00003 1.57831 1.16922 1.68368 1.40751 1.04837 0.73500 0.76711 0.73901 1.93455 1.58514 1.58416 1.85981 1.93510 1.67784 1.86583 1.50161 1.30765 1.11114 1.20060 1.12462 1.21168 0.97054 0.98466 0.97306 1.19486 0.95520 0.93040 0.96100 1.21539 1.25891 1.07113 1.03695 0.95227 1.26092 0.94249 0.97331 1.01750 1.70079 1.31346 1.18668 1.39141 0.85627 0.78073 0.79271 0.79513 1.19121 1.21161 1.15870 0.91548 0.91019 0.92068 0.76275 0.90291 0.85567 0.92008 0.84919 0.91803 0.85728 0.89735 0.87803 0.83009 0.82780 0.91621 0.92152 0.95255 0.94715 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.70 9.53 71.98 0.69 -2.02 16 2 C 0.12 1.69 3.43 30.59 0.11 1.79 16 3 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 4 O -0.57 -7.20 9.97 -148.98 -1.49 -8.69 16 5 C -0.23 -3.96 3.30 30.59 0.10 -3.86 16 6 C 0.13 2.31 3.17 44.97 0.14 2.46 16 7 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 8 C 0.05 0.82 4.97 72.08 0.36 1.18 16 9 O -0.40 -7.22 10.74 -148.98 -1.60 -8.82 16 10 C 0.04 0.64 7.00 72.22 0.51 1.14 16 11 C 0.08 1.36 6.59 86.49 0.57 1.93 16 12 N -1.00 -20.43 3.26 -488.62 -1.59 -22.02 16 13 S 2.61 70.43 4.85 -56.49 -0.27 70.16 16 14 O -0.97 -30.13 14.18 -127.65 -1.81 -31.94 16 15 O -0.99 -33.04 16.49 -127.65 -2.11 -35.14 16 16 C -0.61 -15.53 5.95 71.98 0.43 -15.10 16 17 C -0.10 -3.70 5.16 30.60 0.16 -3.54 16 18 C 0.00 -0.13 4.04 29.85 0.12 -0.01 16 19 C -0.54 -30.86 9.66 25.60 0.25 -30.62 16 20 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 21 C 0.00 0.15 5.47 84.66 0.46 0.61 16 22 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 23 Si 0.95 42.08 27.46 68.60 1.88 43.97 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 26 H -0.24 -9.18 6.55 99.48 0.65 -8.52 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.39 3.00 9.05 -74.05 -0.67 2.33 16 31 H 0.08 1.25 5.15 -2.39 -0.01 1.24 16 32 H 0.13 2.82 5.17 -5.94 -0.03 2.79 16 33 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 34 H 0.13 2.00 5.99 -2.39 -0.01 1.98 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.10 1.81 6.93 -2.39 -0.02 1.80 16 39 H 0.15 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.15 3.07 5.65 -2.39 -0.01 3.05 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.03 1.20 7.56 -2.39 -0.02 1.18 16 44 H 0.03 1.41 7.21 -2.39 -0.02 1.39 16 45 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -75.82 356.67 -2.55 -78.37 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.25 Total: 19.12 kcal Atomic # 6 Polarization: -49.91 SS G_CDS: 3.89 Total: -46.02 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -1.29 Total: -81.01 kcal Atomic # 8 Polarization: -77.58 SS G_CDS: -7.00 Total: -84.58 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.97 kcal Atomic # 16 Polarization: 70.43 SS G_CDS: -0.27 Total: 70.16 kcal Total: -75.82 -2.55 -78.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152896477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.036 kcal (2) G-P(sol) polarization free energy of solvation -75.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds