Wall clock time and date at job start Fri Apr 10 2020 14:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46460 * 2 1 4 4 O 1.42898 * 109.46970 * 119.99440 * 2 1 3 5 5 C 1.52996 * 109.47277 * 240.00040 * 2 1 3 6 6 C 1.53002 * 109.47266 * 177.54006 * 5 2 1 7 7 H 1.09004 * 109.70606 * 53.39302 * 6 5 2 8 8 C 1.52881 * 109.61642 * 293.09922 * 6 5 2 9 9 O 1.42960 * 109.29519 * 188.11447 * 8 6 5 10 10 C 1.42959 * 114.17202 * 62.44442 * 9 8 6 11 11 C 1.53297 * 109.22410 * 297.42248 * 10 9 8 12 12 N 1.47148 * 108.38372 * 52.29674 * 11 10 9 13 13 S 1.65603 * 120.98277 * 129.44841 * 12 11 10 14 14 O 1.42098 * 104.27441 * 348.03041 * 13 12 11 15 15 O 1.42099 * 104.27478 * 220.17774 * 13 12 11 16 16 C 1.81396 * 104.45406 * 104.10644 * 13 12 11 17 17 C 1.52996 * 109.47401 * 175.02257 * 16 13 12 18 18 C 1.52995 * 109.47144 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.46924 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00084 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99667 * 180.27449 * 19 18 17 22 22 N 1.31519 * 119.99990 * 179.72508 * 21 19 18 23 23 Si 1.86797 * 120.00327 * 359.72329 * 21 19 18 24 24 H 1.48507 * 109.46912 * 89.99970 * 23 21 19 25 25 H 1.48493 * 109.47477 * 210.00008 * 23 21 19 26 26 H 1.48507 * 109.46973 * 330.00373 * 23 21 19 27 27 H 1.09006 * 109.46460 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47652 * 299.99880 * 1 2 3 29 29 H 1.09004 * 109.47023 * 60.00727 * 1 2 3 30 30 H 0.96701 * 113.99994 * 64.93678 * 4 2 1 31 31 H 1.08997 * 109.47556 * 57.53889 * 5 2 1 32 32 H 1.08999 * 109.47242 * 297.53701 * 5 2 1 33 33 H 1.08998 * 109.58580 * 68.10198 * 8 6 5 34 34 H 1.08994 * 109.36511 * 307.98976 * 8 6 5 35 35 H 1.08995 * 109.51661 * 177.49715 * 10 9 8 36 36 H 1.09008 * 109.51218 * 57.34355 * 10 9 8 37 37 H 1.09005 * 109.67915 * 292.57737 * 11 10 9 38 38 H 1.08998 * 109.71343 * 172.04084 * 11 10 9 39 39 H 1.09001 * 109.46939 * 55.01556 * 16 13 12 40 40 H 1.09008 * 109.46760 * 295.01951 * 16 13 12 41 41 H 1.09000 * 109.47218 * 59.99425 * 17 16 13 42 42 H 1.09008 * 109.46914 * 299.99599 * 17 16 13 43 43 H 1.09000 * 109.47440 * 59.99674 * 18 17 16 44 44 H 1.08994 * 109.47074 * 299.99639 * 18 17 16 45 45 H 0.96992 * 120.00268 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0401 -0.7212 -1.2492 6 6 3.5688 -0.6678 -1.2805 7 1 3.9692 -1.0483 -0.3408 8 6 4.0279 0.7762 -1.4840 9 8 5.4407 0.7966 -1.7012 10 6 5.8625 0.0989 -2.8756 11 6 5.4985 -1.3840 -2.7398 12 7 4.0704 -1.4820 -2.3989 13 16 3.0562 -2.4741 -3.2531 14 8 3.8136 -2.8500 -4.3951 15 8 1.8581 -1.7215 -3.3839 16 6 2.7957 -3.9012 -2.1640 17 6 1.7679 -4.8430 -2.7944 18 6 1.5488 -6.0469 -1.8761 19 6 0.5359 -6.9743 -2.4968 20 1 0.0931 -6.7296 -3.4510 21 6 0.1707 -8.1325 -1.8440 22 7 -0.7173 -8.9392 -2.3831 23 14 0.9370 -8.5561 -0.1939 24 1 0.1139 -7.9760 0.8976 25 1 0.9950 -10.0319 -0.0393 26 1 2.3112 -7.9971 -0.1283 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 1.7846 -1.6143 1.1960 31 1 1.6412 -0.2336 -2.1387 32 1 1.7133 -1.7608 -1.2274 33 1 3.7872 1.3643 -0.5984 34 1 3.5201 1.1981 -2.3512 35 1 6.9416 0.1997 -2.9911 36 1 5.3614 0.5184 -3.7480 37 1 6.0966 -1.8379 -1.9495 38 1 5.6868 -1.8967 -3.6831 39 1 2.4289 -3.5579 -1.1967 40 1 3.7386 -4.4311 -2.0277 41 1 2.1349 -5.1862 -3.7617 42 1 0.8251 -4.3131 -2.9306 43 1 1.1820 -5.7040 -0.9086 44 1 2.4916 -6.5767 -1.7403 45 1 -0.9745 -9.7538 -1.9237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152896532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:36 Heat of formation + Delta-G solvation = -169.288587 kcal Electronic energy + Delta-G solvation = -27067.933631 eV Core-core repulsion = 23212.827812 eV Total energy + Delta-G solvation = -3855.105819 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.96965 -38.07083 -37.13111 -35.98666 -35.22396 -34.91090 -33.01304 -32.27404 -30.88867 -28.50478 -27.94270 -26.48755 -23.74519 -23.63452 -21.93641 -21.48880 -20.44791 -18.94777 -17.67919 -17.21233 -16.95078 -16.62181 -16.23724 -16.16053 -15.75210 -15.43154 -15.21293 -15.03764 -14.48150 -14.38706 -14.20238 -13.89458 -13.32403 -12.97640 -12.78194 -12.46389 -12.42588 -12.38332 -12.16148 -12.06668 -12.01189 -11.81281 -11.71606 -11.67171 -11.35388 -11.05014 -11.02411 -10.97854 -10.66737 -10.28063 -10.17635 -10.14439 -9.93320 -9.73882 -9.33657 -8.98284 -8.63822 -6.13394 -4.13207 0.22638 2.47802 3.22274 3.30695 3.32178 3.50039 3.78542 4.02957 4.09854 4.24830 4.35602 4.40019 4.58439 4.68207 4.75542 4.82136 4.89675 4.93258 5.00475 5.09041 5.11043 5.20171 5.25803 5.31461 5.36549 5.45978 5.56420 5.61813 5.64816 5.78724 5.86895 6.00064 6.02279 6.06736 6.18193 6.28767 6.58024 6.81186 7.04780 7.19167 7.40662 7.65217 8.41959 8.90538 9.47478 10.99839 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.004016 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.788025 B = 6970.519666 C = 7899.464950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.105 3.895 3 H 0.101 0.899 4 O -0.565 6.565 5 C -0.187 4.187 6 C 0.124 3.876 7 H 0.092 0.908 8 C 0.056 3.944 9 O -0.378 6.378 10 C 0.050 3.950 11 C 0.081 3.919 12 N -1.005 6.005 13 S 2.598 3.402 14 O -0.960 6.960 15 O -0.953 6.953 16 C -0.616 4.616 17 C -0.097 4.097 18 C -0.003 4.003 19 C -0.528 4.528 20 H 0.074 0.926 21 C 0.069 3.931 22 N -0.899 5.899 23 Si 0.880 3.120 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.266 1.266 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.378 0.622 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.015 0.985 44 H 0.020 0.980 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.862 20.685 3.947 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.046 3.954 3 H 0.118 0.882 4 O -0.372 6.372 5 C -0.225 4.225 6 C 0.018 3.982 7 H 0.110 0.890 8 C -0.022 4.022 9 O -0.296 6.296 10 C -0.028 4.028 11 C -0.045 4.045 12 N -0.843 5.843 13 S 2.696 3.304 14 O -0.951 6.951 15 O -0.943 6.943 16 C -0.747 4.747 17 C -0.136 4.136 18 C -0.042 4.042 19 C -0.566 4.566 20 H 0.092 0.908 21 C -0.133 4.133 22 N -0.538 5.538 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.191 1.191 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.225 0.775 31 H 0.140 0.860 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.034 0.966 44 H 0.038 0.962 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.803 21.391 3.341 24.195 hybrid contribution 0.006 -1.529 1.134 1.904 sum 10.808 19.861 4.475 23.050 Atomic orbital electron populations 1.22473 0.95741 1.03342 1.02780 1.21931 0.93541 0.96497 0.83466 0.88168 1.86555 1.80611 1.26989 1.42998 1.23311 0.93441 1.03723 1.02056 1.21574 0.94180 0.92524 0.89953 0.89037 1.22943 0.81906 0.95215 1.02185 1.87951 1.22409 1.74499 1.44720 1.22931 1.00859 0.90890 0.88127 1.22175 0.80682 0.98478 1.03128 1.58030 1.20082 1.58076 1.48089 1.05476 0.73750 0.75915 0.75257 1.93538 1.70853 1.84164 1.46512 1.93607 1.47104 1.67674 1.85885 1.30700 1.10243 1.18087 1.15690 1.21320 0.95427 0.96695 1.00154 1.19522 0.97472 0.92516 0.94697 1.21115 1.23099 1.04856 1.07576 0.90752 1.25021 0.94594 0.96015 0.97694 1.69905 1.31960 1.12819 1.39081 0.86787 0.80378 0.77673 0.84487 1.20178 1.21197 1.19070 0.91752 0.91747 0.91188 0.77478 0.86049 0.90683 0.87631 0.92406 0.87610 0.92552 0.90516 0.87351 0.85579 0.85274 0.91140 0.90877 0.96644 0.96176 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 9.56 37.16 0.36 -1.24 16 2 C 0.11 0.90 3.46 -26.73 -0.09 0.81 16 3 H 0.10 0.75 6.72 -51.93 -0.35 0.40 16 4 O -0.57 -5.27 12.68 -35.23 -0.45 -5.72 16 5 C -0.19 -1.86 2.72 -26.73 -0.07 -1.93 16 6 C 0.12 1.21 3.08 -67.64 -0.21 1.00 16 7 H 0.09 0.87 7.59 -51.93 -0.39 0.47 16 8 C 0.06 0.51 5.86 37.10 0.22 0.73 16 9 O -0.38 -3.89 10.74 -35.23 -0.38 -4.27 16 10 C 0.05 0.44 6.98 37.31 0.26 0.70 16 11 C 0.08 0.77 6.70 -3.53 -0.02 0.74 16 12 N -1.00 -11.01 3.26 -106.26 -0.35 -11.35 16 13 S 2.60 35.77 4.86 -107.50 -0.52 35.25 16 14 O -0.96 -15.87 16.33 -57.54 -0.94 -16.80 16 15 O -0.95 -14.57 13.66 -57.54 -0.79 -15.35 16 16 C -0.62 -8.58 5.89 37.16 0.22 -8.36 16 17 C -0.10 -1.81 5.16 -26.74 -0.14 -1.95 16 18 C 0.00 -0.08 4.04 -27.88 -0.11 -0.19 16 19 C -0.53 -14.75 9.66 -34.44 -0.33 -15.09 16 20 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 22 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 23 Si 0.88 21.06 27.46 -169.99 -4.67 16.39 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.06 6.55 56.52 0.37 -5.69 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.38 2.67 9.03 45.56 0.41 3.08 16 31 H 0.12 1.35 6.37 -51.93 -0.33 1.02 16 32 H 0.07 0.78 5.03 -51.93 -0.26 0.52 16 33 H 0.11 0.80 6.99 -51.93 -0.36 0.44 16 34 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.11 1.05 6.63 -51.93 -0.34 0.70 16 39 H 0.13 1.46 6.75 -51.92 -0.35 1.11 16 40 H 0.13 1.62 8.14 -51.92 -0.42 1.20 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.07 1.35 8.14 -51.92 -0.42 0.92 16 43 H 0.02 0.33 7.56 -51.93 -0.39 -0.06 16 44 H 0.02 0.45 7.21 -51.93 -0.37 0.08 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 359.87 15.07 5.42 5.42 Total: -1.00 -34.77 359.87 -8.48 -43.25 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.56 Total: 2.64 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -0.03 Total: -22.91 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.43 Total: -37.89 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -2.55 Total: -42.15 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: 35.77 SS G_CDS: -0.52 Total: 35.25 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.77 -8.48 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152896532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.042 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds