Wall clock time and date at job start Fri Apr 10 2020 14:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46460 * 2 1 4 4 O 1.42898 * 109.46970 * 119.99440 * 2 1 3 5 5 C 1.52996 * 109.47277 * 240.00040 * 2 1 3 6 6 C 1.53002 * 109.47266 * 177.54006 * 5 2 1 7 7 H 1.09004 * 109.70606 * 53.39302 * 6 5 2 8 8 C 1.52881 * 109.61642 * 293.09922 * 6 5 2 9 9 O 1.42960 * 109.29519 * 188.11447 * 8 6 5 10 10 C 1.42959 * 114.17202 * 62.44442 * 9 8 6 11 11 C 1.53297 * 109.22410 * 297.42248 * 10 9 8 12 12 N 1.47148 * 108.38372 * 52.29674 * 11 10 9 13 13 S 1.65603 * 120.98277 * 129.44841 * 12 11 10 14 14 O 1.42098 * 104.27441 * 348.03041 * 13 12 11 15 15 O 1.42099 * 104.27478 * 220.17774 * 13 12 11 16 16 C 1.81396 * 104.45406 * 104.10644 * 13 12 11 17 17 C 1.52996 * 109.47401 * 175.02257 * 16 13 12 18 18 C 1.52995 * 109.47144 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.46924 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00084 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99667 * 180.27449 * 19 18 17 22 22 N 1.31519 * 119.99990 * 179.72508 * 21 19 18 23 23 Si 1.86797 * 120.00327 * 359.72329 * 21 19 18 24 24 H 1.48507 * 109.46912 * 89.99970 * 23 21 19 25 25 H 1.48493 * 109.47477 * 210.00008 * 23 21 19 26 26 H 1.48507 * 109.46973 * 330.00373 * 23 21 19 27 27 H 1.09006 * 109.46460 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47652 * 299.99880 * 1 2 3 29 29 H 1.09004 * 109.47023 * 60.00727 * 1 2 3 30 30 H 0.96701 * 113.99994 * 64.93678 * 4 2 1 31 31 H 1.08997 * 109.47556 * 57.53889 * 5 2 1 32 32 H 1.08999 * 109.47242 * 297.53701 * 5 2 1 33 33 H 1.08998 * 109.58580 * 68.10198 * 8 6 5 34 34 H 1.08994 * 109.36511 * 307.98976 * 8 6 5 35 35 H 1.08995 * 109.51661 * 177.49715 * 10 9 8 36 36 H 1.09008 * 109.51218 * 57.34355 * 10 9 8 37 37 H 1.09005 * 109.67915 * 292.57737 * 11 10 9 38 38 H 1.08998 * 109.71343 * 172.04084 * 11 10 9 39 39 H 1.09001 * 109.46939 * 55.01556 * 16 13 12 40 40 H 1.09008 * 109.46760 * 295.01951 * 16 13 12 41 41 H 1.09000 * 109.47218 * 59.99425 * 17 16 13 42 42 H 1.09008 * 109.46914 * 299.99599 * 17 16 13 43 43 H 1.09000 * 109.47440 * 59.99674 * 18 17 16 44 44 H 1.08994 * 109.47074 * 299.99639 * 18 17 16 45 45 H 0.96992 * 120.00268 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0401 -0.7212 -1.2492 6 6 3.5688 -0.6678 -1.2805 7 1 3.9692 -1.0483 -0.3408 8 6 4.0279 0.7762 -1.4840 9 8 5.4407 0.7966 -1.7012 10 6 5.8625 0.0989 -2.8756 11 6 5.4985 -1.3840 -2.7398 12 7 4.0704 -1.4820 -2.3989 13 16 3.0562 -2.4741 -3.2531 14 8 3.8136 -2.8500 -4.3951 15 8 1.8581 -1.7215 -3.3839 16 6 2.7957 -3.9012 -2.1640 17 6 1.7679 -4.8430 -2.7944 18 6 1.5488 -6.0469 -1.8761 19 6 0.5359 -6.9743 -2.4968 20 1 0.0931 -6.7296 -3.4510 21 6 0.1707 -8.1325 -1.8440 22 7 -0.7173 -8.9392 -2.3831 23 14 0.9370 -8.5561 -0.1939 24 1 0.1139 -7.9760 0.8976 25 1 0.9950 -10.0319 -0.0393 26 1 2.3112 -7.9971 -0.1283 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 1.7846 -1.6143 1.1960 31 1 1.6412 -0.2336 -2.1387 32 1 1.7133 -1.7608 -1.2274 33 1 3.7872 1.3643 -0.5984 34 1 3.5201 1.1981 -2.3512 35 1 6.9416 0.1997 -2.9911 36 1 5.3614 0.5184 -3.7480 37 1 6.0966 -1.8379 -1.9495 38 1 5.6868 -1.8967 -3.6831 39 1 2.4289 -3.5579 -1.1967 40 1 3.7386 -4.4311 -2.0277 41 1 2.1349 -5.1862 -3.7617 42 1 0.8251 -4.3131 -2.9306 43 1 1.1820 -5.7040 -0.9086 44 1 2.4916 -6.5767 -1.7403 45 1 -0.9745 -9.7538 -1.9237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152896532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:34 Heat of formation + Delta-G solvation = -197.519769 kcal Electronic energy + Delta-G solvation = -27069.157827 eV Core-core repulsion = 23212.827812 eV Total energy + Delta-G solvation = -3856.330015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.71251 -38.87570 -38.16298 -37.14342 -36.55578 -36.03143 -34.29336 -33.73326 -31.56999 -30.22577 -28.70139 -27.26264 -25.35862 -24.45682 -22.70177 -22.43496 -21.94281 -19.98024 -19.00553 -18.58202 -18.01604 -17.42958 -17.35231 -16.98598 -16.61656 -16.29888 -16.25336 -16.11014 -15.76138 -15.65454 -15.18065 -14.83800 -14.67374 -14.12379 -14.02003 -13.79367 -13.46451 -13.35986 -13.26058 -13.23111 -13.09067 -12.95403 -12.72880 -12.61985 -12.56054 -12.42750 -12.08125 -11.86763 -11.73464 -11.67282 -11.48896 -11.43568 -11.18092 -11.04037 -10.89900 -10.79036 -9.81722 -8.31445 -6.37645 -0.86757 1.35601 1.38379 1.49630 1.51481 2.34778 2.69783 2.83553 3.03760 3.07017 3.26588 3.55243 3.61757 3.72515 3.78046 3.88711 4.04066 4.09533 4.16200 4.28399 4.29336 4.35123 4.41788 4.52900 4.60675 4.63439 4.65341 4.73935 4.82130 4.90182 4.91390 4.93986 5.06248 5.18881 5.28172 5.30553 5.34002 5.41930 5.48963 5.60384 6.12590 6.23053 6.70599 6.83845 7.27254 8.85521 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.004016 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.788025 B = 6970.519666 C = 7899.464950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.112 3.888 3 H 0.114 0.886 4 O -0.574 6.574 5 C -0.187 4.187 6 C 0.124 3.876 7 H 0.102 0.898 8 C 0.053 3.947 9 O -0.388 6.388 10 C 0.048 3.952 11 C 0.073 3.927 12 N -0.999 5.999 13 S 2.612 3.388 14 O -0.991 6.991 15 O -0.972 6.972 16 C -0.612 4.612 17 C -0.100 4.100 18 C -0.004 4.004 19 C -0.544 4.544 20 H 0.029 0.971 21 C 0.003 3.997 22 N -0.952 5.952 23 Si 0.953 3.047 24 H -0.262 1.262 25 H -0.286 1.286 26 H -0.240 1.240 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.387 0.613 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.123 0.877 34 H 0.056 0.944 35 H 0.131 0.869 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.033 0.967 44 H 0.029 0.971 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.983 22.012 6.504 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.052 3.948 3 H 0.132 0.868 4 O -0.382 6.382 5 C -0.226 4.226 6 C 0.019 3.981 7 H 0.120 0.880 8 C -0.025 4.025 9 O -0.307 6.307 10 C -0.031 4.031 11 C -0.051 4.051 12 N -0.838 5.838 13 S 2.711 3.289 14 O -0.981 6.981 15 O -0.962 6.962 16 C -0.743 4.743 17 C -0.140 4.140 18 C -0.042 4.042 19 C -0.582 4.582 20 H 0.048 0.952 21 C -0.194 4.194 22 N -0.592 5.592 23 Si 0.776 3.224 24 H -0.187 1.187 25 H -0.212 1.212 26 H -0.163 1.163 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.236 0.764 31 H 0.126 0.874 32 H 0.087 0.913 33 H 0.141 0.859 34 H 0.074 0.926 35 H 0.149 0.851 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.172 0.828 40 H 0.167 0.833 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.927 22.730 5.884 26.803 hybrid contribution -0.693 -1.899 0.245 2.037 sum 12.234 20.831 6.129 24.923 Atomic orbital electron populations 1.22487 0.95992 1.02886 1.03106 1.21905 0.93284 0.96934 0.82651 0.86815 1.86537 1.80698 1.27912 1.43033 1.23277 0.93673 1.03409 1.02212 1.21710 0.93955 0.92769 0.89678 0.87971 1.23051 0.81584 0.94901 1.02967 1.87941 1.22808 1.74691 1.45228 1.23085 1.02377 0.90031 0.87560 1.22407 0.79740 0.99309 1.03678 1.57790 1.20505 1.57291 1.48256 1.04842 0.73370 0.75829 0.74907 1.93497 1.71531 1.84753 1.48360 1.93595 1.48321 1.68033 1.86276 1.30628 1.09714 1.17303 1.16636 1.21160 0.96915 0.96496 0.99389 1.19492 0.96081 0.92937 0.95730 1.21536 1.24114 1.06259 1.06310 0.95213 1.26091 0.95074 0.95769 1.02473 1.70079 1.34055 1.13663 1.41411 0.85618 0.80663 0.77409 0.78739 1.18687 1.21215 1.16334 0.92608 0.91158 0.91155 0.76423 0.87444 0.91253 0.85914 0.92618 0.85088 0.92985 0.88623 0.87786 0.82769 0.83268 0.92329 0.91490 0.94838 0.95242 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.95 9.56 71.98 0.69 -2.26 16 2 C 0.11 1.68 3.46 30.59 0.11 1.78 16 3 H 0.11 1.39 6.72 -2.38 -0.02 1.38 16 4 O -0.57 -9.12 12.68 -148.98 -1.89 -11.01 16 5 C -0.19 -3.38 2.72 30.59 0.08 -3.30 16 6 C 0.12 2.12 3.08 44.83 0.14 2.26 16 7 H 0.10 1.58 7.59 -2.39 -0.02 1.56 16 8 C 0.05 0.85 5.86 71.94 0.42 1.27 16 9 O -0.39 -6.97 10.74 -148.98 -1.60 -8.57 16 10 C 0.05 0.71 6.98 72.08 0.50 1.22 16 11 C 0.07 1.22 6.70 86.36 0.58 1.80 16 12 N -1.00 -19.79 3.26 -490.09 -1.60 -21.39 16 13 S 2.61 69.21 4.86 -56.49 -0.27 68.94 16 14 O -0.99 -32.34 16.33 -127.65 -2.08 -34.43 16 15 O -0.97 -29.39 13.66 -127.65 -1.74 -31.13 16 16 C -0.61 -15.70 5.89 71.98 0.42 -15.28 16 17 C -0.10 -3.72 5.16 30.59 0.16 -3.56 16 18 C 0.00 -0.17 4.04 29.85 0.12 -0.05 16 19 C -0.54 -31.05 9.66 25.60 0.25 -30.80 16 20 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 21 C 0.00 0.16 5.47 84.65 0.46 0.62 16 22 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 23 Si 0.95 42.51 27.46 68.60 1.88 44.39 16 24 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 25 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.24 -9.64 6.55 99.48 0.65 -8.99 16 27 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.39 4.40 9.03 -74.06 -0.67 3.73 16 31 H 0.11 2.29 6.37 -2.39 -0.02 2.28 16 32 H 0.07 1.32 5.03 -2.39 -0.01 1.31 16 33 H 0.12 1.51 6.99 -2.39 -0.02 1.49 16 34 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 35 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.10 1.85 6.63 -2.39 -0.02 1.83 16 39 H 0.15 3.06 6.75 -2.39 -0.02 3.05 16 40 H 0.15 3.26 8.14 -2.39 -0.02 3.24 16 41 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 43 H 0.03 1.36 7.56 -2.39 -0.02 1.34 16 44 H 0.03 1.24 7.21 -2.39 -0.02 1.23 16 45 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -76.26 359.87 -2.81 -79.07 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.26 Total: 19.59 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 3.93 Total: -46.30 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.30 Total: -80.56 kcal Atomic # 8 Polarization: -77.82 SS G_CDS: -7.32 Total: -85.13 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.88 Total: 44.39 kcal Atomic # 16 Polarization: 69.21 SS G_CDS: -0.27 Total: 68.94 kcal Total: -76.26 -2.81 -79.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152896532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.449 kcal (2) G-P(sol) polarization free energy of solvation -76.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds