Wall clock time and date at job start Fri Apr 10 2020 14:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99942 * 2 1 4 4 C 1.53004 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.51034 * 305.10432 * 4 3 2 6 6 C 1.53299 * 109.51075 * 185.00235 * 4 3 2 7 7 N 1.47150 * 108.38058 * 187.72432 * 6 4 3 8 8 S 1.65599 * 120.98183 * 230.51125 * 7 6 4 9 9 O 1.42105 * 104.27655 * 333.93019 * 8 7 6 10 10 O 1.42101 * 104.27764 * 206.07456 * 8 7 6 11 11 C 1.81395 * 104.44748 * 90.00324 * 8 7 6 12 12 C 1.52999 * 109.46986 * 180.02562 * 11 8 7 13 13 C 1.53002 * 109.47213 * 180.02562 * 12 11 8 14 14 C 1.50706 * 109.47044 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00265 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99848 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99731 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99899 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47633 * 59.99291 * 18 16 14 20 20 H 1.48504 * 109.47025 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47285 * 299.99307 * 18 16 14 22 22 C 1.47153 * 118.03481 * 50.78830 * 7 6 4 23 23 C 1.53713 * 108.16165 * 309.15590 * 22 7 6 24 24 H 1.08998 * 109.43865 * 172.37742 * 23 22 7 25 25 C 1.52993 * 109.69615 * 292.54632 * 23 22 7 26 26 O 1.42960 * 109.54734 * 65.23136 * 4 3 2 27 27 H 1.09005 * 109.47160 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47614 * 299.99707 * 1 2 3 29 29 H 1.09005 * 109.47250 * 59.99755 * 1 2 3 30 30 H 1.09004 * 109.46704 * 59.99991 * 3 2 1 31 31 H 1.08997 * 109.47397 * 300.00101 * 3 2 1 32 32 H 1.08993 * 109.67824 * 68.00249 * 6 4 3 33 33 H 1.09002 * 109.70786 * 307.46489 * 6 4 3 34 34 H 1.09003 * 109.47393 * 299.99669 * 11 8 7 35 35 H 1.08994 * 109.47678 * 60.00285 * 11 8 7 36 36 H 1.09004 * 109.47080 * 299.99725 * 12 11 8 37 37 H 1.09005 * 109.47285 * 59.99790 * 12 11 8 38 38 H 1.09003 * 109.47218 * 299.99466 * 13 12 11 39 39 H 1.08995 * 109.47220 * 59.99596 * 13 12 11 40 40 H 0.97002 * 119.99124 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.68152 * 68.93470 * 22 7 6 42 42 H 1.09000 * 109.68018 * 189.48560 * 22 7 6 43 43 H 1.09005 * 109.47432 * 179.77087 * 25 23 22 44 44 H 1.08999 * 109.47661 * 299.76722 * 25 23 22 45 45 H 1.09003 * 109.47436 * 59.76936 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8514 0.5671 0.8414 6 6 4.1595 2.5792 0.1266 7 7 5.6136 2.4557 -0.0619 8 16 6.6734 3.1208 1.0229 9 8 5.9496 4.1959 1.6058 10 8 7.8506 3.3570 0.2630 11 6 6.9558 1.8082 2.2426 12 6 7.9302 2.3066 3.3118 13 6 8.1689 1.1992 4.3403 14 6 9.1282 1.6904 5.3938 15 1 9.5279 2.6920 5.3353 16 6 9.4963 0.8607 6.4316 17 7 9.0099 -0.3592 6.5024 18 14 10.6858 1.4692 7.7369 19 1 10.1107 2.6586 8.4151 20 1 10.9174 0.3945 8.7352 21 1 11.9748 1.8386 7.0986 22 6 6.0982 1.7290 -1.2461 23 6 5.3797 0.3713 -1.3024 24 1 5.6200 -0.1277 -2.2412 25 6 5.8325 -0.5007 -0.1297 26 8 3.9682 0.5840 -1.2223 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.6885 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.9508 2.9867 1.1158 33 1 3.7449 3.2378 -0.6367 34 1 6.0096 1.5381 2.7115 35 1 7.3773 0.9346 1.7454 36 1 8.8765 2.5769 2.8433 37 1 7.5083 3.1800 3.8091 38 1 7.2228 0.9284 4.8089 39 1 8.5909 0.3261 3.8428 40 1 9.2687 -0.9427 7.2328 41 1 5.8755 2.3029 -2.1456 42 1 7.1741 1.5733 -1.1665 43 1 5.3178 -1.4608 -0.1708 44 1 6.9086 -0.6625 -0.1914 45 1 5.5935 -0.0003 0.8088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249948664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:22 Heat of formation + Delta-G solvation = -168.511489 kcal Electronic energy + Delta-G solvation = -26536.273055 eV Core-core repulsion = 22681.200933 eV Total energy + Delta-G solvation = -3855.072121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -40.08856 -37.89248 -37.06646 -35.87275 -34.97263 -34.71310 -33.21470 -32.22547 -30.01078 -27.91078 -27.59149 -26.31293 -24.96656 -23.66440 -22.96777 -20.70145 -20.13847 -18.95087 -17.83790 -17.18431 -16.85546 -16.70413 -16.10809 -15.98629 -15.81424 -15.54036 -15.01058 -14.85648 -14.51093 -14.43008 -14.36778 -14.06874 -13.06727 -12.72576 -12.63606 -12.48194 -12.32501 -12.19897 -12.13648 -12.03918 -11.90132 -11.83319 -11.70951 -11.56759 -11.39492 -11.31152 -10.91921 -10.90467 -10.65498 -10.44873 -10.31372 -9.98729 -9.95529 -9.44863 -9.21650 -8.88657 -8.42616 -6.07706 -4.11040 0.31323 2.55012 3.30569 3.34147 3.34641 3.37666 3.46989 3.91658 4.18201 4.34277 4.41112 4.49588 4.67510 4.75995 4.86562 4.91626 4.97492 5.02652 5.07630 5.10208 5.10585 5.12667 5.17579 5.25801 5.28661 5.39728 5.45383 5.55202 5.63942 5.68634 5.81438 5.90256 6.05722 6.17615 6.29597 6.39581 6.82753 6.83400 6.97411 7.53773 7.63547 7.89881 8.30112 8.94869 9.53769 11.03406 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.003283 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.997611 B = 8525.508093 C = 9332.472956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.070 3.930 4 C 0.073 3.927 5 H 0.080 0.920 6 C 0.098 3.902 7 N -1.004 6.004 8 S 2.596 3.404 9 O -0.957 6.957 10 O -0.956 6.956 11 C -0.611 4.611 12 C -0.105 4.105 13 C 0.032 3.968 14 C -0.528 4.528 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.093 3.907 23 C 0.075 3.925 24 H 0.114 0.886 25 C -0.195 4.195 26 O -0.360 6.360 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.262 0.738 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.882 1.063 -17.086 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.008 4.008 4 C 0.013 3.987 5 H 0.098 0.902 6 C -0.029 4.029 7 N -0.841 5.841 8 S 2.694 3.306 9 O -0.948 6.948 10 O -0.946 6.946 11 C -0.742 4.742 12 C -0.144 4.144 13 C -0.006 4.006 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.033 4.033 23 C 0.016 3.984 24 H 0.132 0.868 25 C -0.252 4.252 26 O -0.279 6.279 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.119 0.881 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.548 1.591 -17.214 22.594 hybrid contribution 0.456 -0.191 1.194 1.293 sum -14.092 1.400 -16.020 21.382 Atomic orbital electron populations 1.22754 0.80953 1.02886 0.99933 1.87949 1.19613 1.27050 1.95398 1.22471 0.91331 0.85658 1.01307 1.22472 0.92904 0.93743 0.89559 0.90236 1.21913 0.79983 0.96840 1.04120 1.57983 1.16335 1.72440 1.37337 1.05601 0.73400 0.76654 0.74991 1.93564 1.72007 1.50466 1.78724 1.93567 1.47903 1.84441 1.68691 1.30671 1.10319 1.18046 1.15203 1.21508 0.95683 1.01847 0.95385 1.19048 0.97222 0.92285 0.92054 1.21210 1.26958 0.99768 1.08691 0.92433 1.25015 0.96400 0.94868 0.98035 1.69949 1.44188 1.06913 1.32312 0.86614 0.81494 0.78409 0.81257 1.20113 1.21227 1.20109 1.22228 0.99854 0.92821 0.88402 1.22676 0.81333 0.94217 1.00190 0.86798 1.22540 1.02612 1.00937 0.99097 1.88045 1.21906 1.81118 1.36801 0.89558 0.94006 0.94072 0.91336 0.92155 0.88013 0.90059 0.85464 0.85313 0.91577 0.91586 0.96138 0.96118 0.92817 0.90192 0.88065 0.91031 0.90869 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.05 10.67 -39.67 -0.42 -4.48 16 3 C 0.07 0.61 5.61 37.16 0.21 0.82 16 4 C 0.07 0.73 2.67 -26.57 -0.07 0.66 16 5 H 0.08 0.84 6.25 -51.93 -0.32 0.51 16 6 C 0.10 0.97 5.79 -3.53 -0.02 0.95 16 7 N -1.00 -11.55 2.78 -112.82 -0.31 -11.87 16 8 S 2.60 38.22 5.42 -107.50 -0.58 37.64 16 9 O -0.96 -16.43 16.81 -57.54 -0.97 -17.40 16 10 O -0.96 -16.47 16.80 -57.54 -0.97 -17.43 16 11 C -0.61 -9.25 5.39 37.16 0.20 -9.05 16 12 C -0.10 -2.09 5.16 -26.73 -0.14 -2.23 16 13 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16 14 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 18 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.09 0.92 5.92 -3.31 -0.02 0.90 16 23 C 0.07 0.70 3.93 -26.36 -0.10 0.60 16 24 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 25 C -0.19 -1.91 8.60 37.15 0.32 -1.59 16 26 O -0.36 -3.97 10.20 -39.67 -0.40 -4.38 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.96 7.23 -51.93 -0.38 0.58 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 35 H 0.13 1.75 7.50 -51.93 -0.39 1.36 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.97 7.22 -51.93 -0.37 0.59 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.68 4.86 -51.93 -0.25 0.43 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -35.30 371.68 -9.00 -44.31 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -7.60 Total: -2.35 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 0.94 Total: -20.44 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.42 Total: -37.53 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -2.76 Total: -43.68 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 38.22 SS G_CDS: -0.58 Total: 37.64 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.30 -9.00 -44.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249948664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.205 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.13 seconds