Wall clock time and date at job start Fri Apr 10 2020 14:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99942 * 2 1 4 4 C 1.53004 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.51034 * 305.10432 * 4 3 2 6 6 C 1.53299 * 109.51075 * 185.00235 * 4 3 2 7 7 N 1.47150 * 108.38058 * 187.72432 * 6 4 3 8 8 S 1.65599 * 120.98183 * 230.51125 * 7 6 4 9 9 O 1.42105 * 104.27655 * 333.93019 * 8 7 6 10 10 O 1.42101 * 104.27764 * 206.07456 * 8 7 6 11 11 C 1.81395 * 104.44748 * 90.00324 * 8 7 6 12 12 C 1.52999 * 109.46986 * 180.02562 * 11 8 7 13 13 C 1.53002 * 109.47213 * 180.02562 * 12 11 8 14 14 C 1.50706 * 109.47044 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00265 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99848 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99731 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99899 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47633 * 59.99291 * 18 16 14 20 20 H 1.48504 * 109.47025 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47285 * 299.99307 * 18 16 14 22 22 C 1.47153 * 118.03481 * 50.78830 * 7 6 4 23 23 C 1.53713 * 108.16165 * 309.15590 * 22 7 6 24 24 H 1.08998 * 109.43865 * 172.37742 * 23 22 7 25 25 C 1.52993 * 109.69615 * 292.54632 * 23 22 7 26 26 O 1.42960 * 109.54734 * 65.23136 * 4 3 2 27 27 H 1.09005 * 109.47160 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47614 * 299.99707 * 1 2 3 29 29 H 1.09005 * 109.47250 * 59.99755 * 1 2 3 30 30 H 1.09004 * 109.46704 * 59.99991 * 3 2 1 31 31 H 1.08997 * 109.47397 * 300.00101 * 3 2 1 32 32 H 1.08993 * 109.67824 * 68.00249 * 6 4 3 33 33 H 1.09002 * 109.70786 * 307.46489 * 6 4 3 34 34 H 1.09003 * 109.47393 * 299.99669 * 11 8 7 35 35 H 1.08994 * 109.47678 * 60.00285 * 11 8 7 36 36 H 1.09004 * 109.47080 * 299.99725 * 12 11 8 37 37 H 1.09005 * 109.47285 * 59.99790 * 12 11 8 38 38 H 1.09003 * 109.47218 * 299.99466 * 13 12 11 39 39 H 1.08995 * 109.47220 * 59.99596 * 13 12 11 40 40 H 0.97002 * 119.99124 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.68152 * 68.93470 * 22 7 6 42 42 H 1.09000 * 109.68018 * 189.48560 * 22 7 6 43 43 H 1.09005 * 109.47432 * 179.77087 * 25 23 22 44 44 H 1.08999 * 109.47661 * 299.76722 * 25 23 22 45 45 H 1.09003 * 109.47436 * 59.76936 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8514 0.5671 0.8414 6 6 4.1595 2.5792 0.1266 7 7 5.6136 2.4557 -0.0619 8 16 6.6734 3.1208 1.0229 9 8 5.9496 4.1959 1.6058 10 8 7.8506 3.3570 0.2630 11 6 6.9558 1.8082 2.2426 12 6 7.9302 2.3066 3.3118 13 6 8.1689 1.1992 4.3403 14 6 9.1282 1.6904 5.3938 15 1 9.5279 2.6920 5.3353 16 6 9.4963 0.8607 6.4316 17 7 9.0099 -0.3592 6.5024 18 14 10.6858 1.4692 7.7369 19 1 10.1107 2.6586 8.4151 20 1 10.9174 0.3945 8.7352 21 1 11.9748 1.8386 7.0986 22 6 6.0982 1.7290 -1.2461 23 6 5.3797 0.3713 -1.3024 24 1 5.6200 -0.1277 -2.2412 25 6 5.8325 -0.5007 -0.1297 26 8 3.9682 0.5840 -1.2223 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.6885 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.9508 2.9867 1.1158 33 1 3.7449 3.2378 -0.6367 34 1 6.0096 1.5381 2.7115 35 1 7.3773 0.9346 1.7454 36 1 8.8765 2.5769 2.8433 37 1 7.5083 3.1800 3.8091 38 1 7.2228 0.9284 4.8089 39 1 8.5909 0.3261 3.8428 40 1 9.2687 -0.9427 7.2328 41 1 5.8755 2.3029 -2.1456 42 1 7.1741 1.5733 -1.1665 43 1 5.3178 -1.4608 -0.1708 44 1 6.9086 -0.6625 -0.1914 45 1 5.5935 -0.0003 0.8088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249948664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:14 Heat of formation + Delta-G solvation = -194.437171 kcal Electronic energy + Delta-G solvation = -26537.397277 eV Core-core repulsion = 22681.200933 eV Total energy + Delta-G solvation = -3856.196343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 4.33 seconds Orbital eigenvalues (eV) -40.86902 -38.58693 -38.33258 -37.15418 -36.50695 -35.83386 -34.20656 -33.94550 -30.78849 -29.69587 -28.29703 -27.06195 -25.90908 -25.37800 -23.70601 -22.38793 -21.04409 -19.96430 -18.95882 -18.58958 -17.99247 -17.60255 -17.29524 -17.08947 -16.79364 -16.48176 -16.30389 -15.98342 -15.73778 -15.45626 -15.26622 -14.97645 -14.50816 -14.12796 -13.80870 -13.59410 -13.47594 -13.36669 -13.27673 -13.19547 -13.00717 -12.89893 -12.80832 -12.74071 -12.68100 -12.51645 -12.31182 -12.20089 -12.05580 -11.77584 -11.55500 -11.35745 -11.21988 -10.89807 -10.59445 -10.57933 -9.80319 -8.23372 -6.34576 -0.88168 1.39754 1.42094 1.49770 1.50441 2.39076 2.65331 2.69560 2.80084 3.06974 3.10280 3.46306 3.72356 3.77490 3.82564 3.97572 4.03669 4.16308 4.17699 4.28472 4.34158 4.38915 4.45404 4.51237 4.59822 4.60348 4.63031 4.70747 4.76503 4.87494 4.90276 4.91929 4.93937 5.03578 5.13390 5.27131 5.40976 5.43931 5.61259 5.78163 6.17536 6.18376 6.27923 6.80861 7.34845 8.87815 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.003283 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.997611 B = 8525.508093 C = 9332.472956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.067 3.933 4 C 0.072 3.928 5 H 0.070 0.930 6 C 0.093 3.907 7 N -0.998 5.998 8 S 2.623 3.377 9 O -0.981 6.981 10 O -0.980 6.980 11 C -0.612 4.612 12 C -0.104 4.104 13 C 0.033 3.967 14 C -0.554 4.554 15 H 0.060 0.940 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.962 3.038 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.267 1.267 22 C 0.087 3.913 23 C 0.077 3.923 24 H 0.136 0.864 25 C -0.199 4.199 26 O -0.372 6.372 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.002 0.998 39 H 0.003 0.997 40 H 0.265 0.735 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.337 1.690 -17.837 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.010 4.010 4 C 0.012 3.988 5 H 0.088 0.912 6 C -0.032 4.032 7 N -0.836 5.836 8 S 2.720 3.280 9 O -0.971 6.971 10 O -0.970 6.970 11 C -0.742 4.742 12 C -0.143 4.143 13 C -0.005 4.005 14 C -0.592 4.592 15 H 0.079 0.921 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.786 3.214 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.038 4.038 23 C 0.018 3.982 24 H 0.153 0.847 25 C -0.256 4.256 26 O -0.291 6.291 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.020 0.980 39 H 0.021 0.979 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.003 2.224 -17.962 23.509 hybrid contribution 0.525 -0.435 1.366 1.526 sum -14.478 1.790 -16.596 22.096 Atomic orbital electron populations 1.22914 0.79434 1.03677 1.00967 1.87896 1.21413 1.28141 1.95640 1.22574 0.90405 0.85374 1.02645 1.22509 0.93871 0.93359 0.89022 0.91166 1.22115 0.78739 0.97297 1.05083 1.57694 1.16682 1.72411 1.36853 1.04600 0.72943 0.75927 0.74567 1.93529 1.72473 1.51650 1.79452 1.93531 1.49500 1.84809 1.69163 1.30640 1.09950 1.19112 1.14538 1.21305 0.97221 1.00189 0.95594 1.18934 0.95563 0.93276 0.92708 1.21713 1.27625 1.00099 1.09751 0.92134 1.25926 0.98172 0.94998 1.00377 1.70067 1.45534 1.08091 1.33208 0.85547 0.79297 0.78115 0.78406 1.19209 1.20656 1.19214 1.22460 1.00199 0.93135 0.88018 1.22783 0.80650 0.93849 1.00904 0.84653 1.22582 1.03140 1.00861 0.99010 1.88037 1.22674 1.81233 1.37180 0.89011 0.92940 0.93024 0.89611 0.91153 0.87495 0.88436 0.83924 0.83860 0.91506 0.91500 0.97966 0.97902 0.92633 0.88748 0.87724 0.91338 0.90103 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.41 -8.27 10.67 -144.74 -1.54 -9.81 16 3 C 0.07 1.07 5.61 71.98 0.40 1.47 16 4 C 0.07 1.34 2.67 30.70 0.08 1.42 16 5 H 0.07 1.43 6.25 -2.39 -0.01 1.41 16 6 C 0.09 1.68 5.79 86.36 0.50 2.18 16 7 N -1.00 -21.29 2.78 -510.86 -1.42 -22.71 16 8 S 2.62 74.45 5.42 -56.49 -0.31 74.15 16 9 O -0.98 -32.64 16.81 -127.65 -2.15 -34.79 16 10 O -0.98 -32.75 16.80 -127.65 -2.14 -34.89 16 11 C -0.61 -18.23 5.39 71.98 0.39 -17.84 16 12 C -0.10 -4.16 5.16 30.59 0.16 -4.00 16 13 C 0.03 1.71 4.97 29.85 0.15 1.86 16 14 C -0.55 -31.32 9.11 25.60 0.23 -31.08 16 15 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 16 C 0.00 0.21 5.46 84.65 0.46 0.67 16 17 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 18 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 C 0.09 1.55 5.92 86.49 0.51 2.06 16 23 C 0.08 1.30 3.93 30.83 0.12 1.42 16 24 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 25 C -0.20 -3.69 8.60 71.98 0.62 -3.07 16 26 O -0.37 -7.58 10.20 -144.74 -1.48 -9.06 16 27 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 1.83 7.23 -2.39 -0.02 1.81 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.14 3.77 8.14 -2.39 -0.02 3.75 16 35 H 0.14 3.81 7.50 -2.39 -0.02 3.79 16 36 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 38 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 41 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.10 1.81 7.22 -2.39 -0.02 1.80 16 43 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.06 1.13 4.86 -2.39 -0.01 1.12 16 Total: -1.00 -75.06 371.68 -0.90 -75.96 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.96 Total: 13.76 kcal Atomic # 6 Polarization: -48.20 SS G_CDS: 4.88 Total: -43.32 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -1.14 Total: -77.96 kcal Atomic # 8 Polarization: -81.24 SS G_CDS: -7.31 Total: -88.55 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 74.45 SS G_CDS: -0.31 Total: 74.15 kcal Total: -75.06 -0.90 -75.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249948664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.482 kcal (2) G-P(sol) polarization free energy of solvation -75.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.33 seconds