Wall clock time and date at job start Fri Apr 10 2020 14:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00092 * 2 1 4 4 C 1.53002 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.51363 * 304.89837 * 4 3 2 6 6 C 1.53302 * 109.51357 * 184.74424 * 4 3 2 7 7 N 1.47141 * 108.38414 * 187.77420 * 6 4 3 8 8 S 1.65603 * 120.98280 * 230.55343 * 7 6 4 9 9 O 1.42100 * 104.27959 * 206.07046 * 8 7 6 10 10 O 1.42101 * 104.27633 * 333.93546 * 8 7 6 11 11 C 1.81406 * 104.44551 * 90.00319 * 8 7 6 12 12 C 1.53002 * 109.47144 * 180.02562 * 11 8 7 13 13 C 1.52996 * 109.47485 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47080 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00209 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99549 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00187 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99892 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46865 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47102 * 120.00186 * 18 16 14 21 21 H 1.48499 * 109.47101 * 240.00054 * 18 16 14 22 22 C 1.47156 * 118.03778 * 50.53824 * 7 6 4 23 23 C 1.53298 * 108.38263 * 309.46246 * 22 7 6 24 24 H 1.09004 * 109.55127 * 292.35397 * 23 22 7 25 25 C 1.52997 * 109.51181 * 172.22739 * 23 22 7 26 26 O 1.42958 * 109.22138 * 52.30143 * 23 22 7 27 27 H 1.09003 * 109.47056 * 300.00287 * 1 2 3 28 28 H 1.09000 * 109.46718 * 60.00594 * 1 2 3 29 29 H 1.09002 * 109.47116 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47633 * 59.99765 * 3 2 1 31 31 H 1.09004 * 109.47072 * 299.99815 * 3 2 1 32 32 H 1.08999 * 109.68084 * 307.49847 * 6 4 3 33 33 H 1.09000 * 109.67648 * 68.04776 * 6 4 3 34 34 H 1.09000 * 109.47252 * 299.99674 * 11 8 7 35 35 H 1.08999 * 109.46938 * 60.00381 * 11 8 7 36 36 H 1.09005 * 109.46982 * 300.00100 * 12 11 8 37 37 H 1.09006 * 109.47104 * 59.99575 * 12 11 8 38 38 H 1.09003 * 109.46513 * 300.00086 * 13 12 11 39 39 H 1.08995 * 109.47026 * 59.99292 * 13 12 11 40 40 H 0.97007 * 119.99909 * 179.97438 * 17 16 14 41 41 H 1.09005 * 109.68134 * 189.74287 * 22 7 6 42 42 H 1.08993 * 109.68143 * 69.18645 * 22 7 6 43 43 H 1.09002 * 109.47153 * 300.25193 * 25 23 22 44 44 H 1.09001 * 109.46832 * 180.25383 * 25 23 22 45 45 H 1.09004 * 109.47261 * 60.25365 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8517 0.5700 0.8435 6 6 4.1597 2.5797 0.1202 7 7 5.6135 2.4554 -0.0695 8 16 6.6745 3.1242 1.0119 9 8 7.8510 3.3577 0.2499 10 8 5.9514 4.2012 1.5920 11 6 6.9582 1.8156 2.2358 12 6 7.9338 2.3175 3.3023 13 6 8.1736 1.2137 4.3342 14 6 9.1339 1.7084 5.3849 15 1 9.5337 2.7097 5.3226 16 6 9.5023 0.8825 6.4257 17 7 9.0159 -0.3371 6.5012 18 14 10.6933 1.4953 7.7278 19 1 11.0918 2.8915 7.4162 20 1 10.0359 1.4540 9.0587 21 1 11.8985 0.6278 7.7439 22 6 6.0969 1.7191 -1.2483 23 6 5.3784 0.3659 -1.3012 24 1 5.7019 -0.2519 -0.4634 25 6 5.7142 -0.3400 -2.6164 26 8 3.9671 0.5789 -1.2204 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.7441 3.2345 -0.6457 33 1 3.9520 2.9912 1.1079 34 1 6.0125 1.5472 2.7066 35 1 7.3791 0.9404 1.7409 36 1 8.8796 2.5863 2.8318 37 1 7.5125 3.1927 3.7970 38 1 7.2278 0.9446 4.8046 39 1 8.5949 0.3389 3.8391 40 1 9.2754 -0.9183 7.2333 41 1 7.1723 1.5607 -1.1668 42 1 5.8764 2.2873 -2.1519 43 1 5.3920 0.2792 -3.4536 44 1 5.1994 -1.3000 -2.6552 45 1 6.7904 -0.5020 -2.6773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249948669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:26 Heat of formation + Delta-G solvation = -197.710764 kcal Electronic energy + Delta-G solvation = -26170.454063 eV Core-core repulsion = 22314.115766 eV Total energy + Delta-G solvation = -3856.338297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -40.69287 -38.59132 -38.33856 -37.15889 -36.50484 -35.87776 -34.35110 -34.18834 -30.77048 -29.69440 -28.23249 -26.99781 -25.79807 -25.39220 -23.01933 -22.52697 -21.74854 -20.07098 -18.89671 -18.59716 -18.08357 -17.66887 -17.32072 -17.16713 -16.53460 -16.46069 -16.39393 -16.17848 -15.88425 -15.49800 -15.13167 -14.52579 -14.45419 -14.11942 -13.84265 -13.58331 -13.46045 -13.42161 -13.28027 -13.19184 -13.03026 -12.97378 -12.79677 -12.76404 -12.63835 -12.58841 -12.35607 -12.20624 -11.95157 -11.78795 -11.59300 -11.41685 -11.32184 -10.89851 -10.61492 -10.59526 -9.86008 -8.24060 -6.35231 -0.89099 1.38985 1.39757 1.48252 1.53003 2.38737 2.58185 2.67844 2.76196 3.06280 3.09676 3.46245 3.71257 3.75897 3.81828 3.94688 4.02908 4.12397 4.18900 4.26169 4.34557 4.38278 4.45119 4.50041 4.59255 4.59751 4.62184 4.73485 4.81399 4.86270 4.89907 4.92302 4.96769 5.03553 5.12194 5.27198 5.38291 5.43588 5.60222 5.77681 6.16418 6.17753 6.26749 6.80603 7.34388 8.87577 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.003147 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.659333 B = 8894.423949 C = 9619.486846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.068 3.932 4 C 0.076 3.924 5 H 0.067 0.933 6 C 0.092 3.908 7 N -1.001 6.001 8 S 2.625 3.375 9 O -0.979 6.979 10 O -0.979 6.979 11 C -0.610 4.610 12 C -0.105 4.105 13 C 0.032 3.968 14 C -0.551 4.551 15 H 0.061 0.939 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.963 3.037 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.087 3.913 23 C 0.068 3.932 24 H 0.063 0.937 25 C -0.140 4.140 26 O -0.376 6.376 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.265 0.735 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.332 1.675 -18.522 24.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.009 4.009 4 C 0.016 3.984 5 H 0.085 0.915 6 C -0.033 4.033 7 N -0.839 5.839 8 S 2.722 3.278 9 O -0.970 6.970 10 O -0.970 6.970 11 C -0.741 4.741 12 C -0.144 4.144 13 C -0.007 4.007 14 C -0.589 4.589 15 H 0.079 0.921 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.788 3.212 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.038 4.038 23 C 0.009 3.991 24 H 0.081 0.919 25 C -0.198 4.198 26 O -0.295 6.295 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.074 0.926 41 H 0.124 0.876 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.995 2.224 -18.655 24.038 hybrid contribution 0.464 -0.427 1.368 1.507 sum -14.531 1.797 -17.287 22.654 Atomic orbital electron populations 1.22920 0.79358 1.03702 1.01001 1.87896 1.21491 1.28151 1.95650 1.22569 0.90208 0.85394 1.02745 1.22523 0.94133 0.93364 0.88361 0.91511 1.22133 0.78736 0.97252 1.05198 1.57769 1.16815 1.72017 1.37273 1.04571 0.72875 0.75892 0.74511 1.93531 1.49522 1.84839 1.69093 1.93529 1.72472 1.51480 1.79487 1.30583 1.09968 1.18994 1.14554 1.21316 0.97271 1.00199 0.95645 1.18954 0.95621 0.93327 0.92764 1.21759 1.27428 1.00174 1.09589 0.92118 1.25939 0.98211 0.95015 1.00402 1.70080 1.45566 1.08259 1.33064 0.85425 0.78504 0.78806 0.78502 1.18731 1.20222 1.20225 1.22384 1.00182 0.92999 0.88239 1.22647 0.81190 0.94719 1.00594 0.91876 1.21746 1.02953 1.00623 0.94479 1.87987 1.22672 1.81189 1.37682 0.92866 0.93016 0.88997 0.89407 0.91124 0.88477 0.87228 0.83910 0.83892 0.91450 0.91417 0.97937 0.97926 0.92627 0.87645 0.89006 0.91089 0.91564 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -8.38 10.67 -144.45 -1.54 -9.92 16 3 C 0.07 1.09 5.60 71.98 0.40 1.50 16 4 C 0.08 1.45 3.06 30.70 0.09 1.54 16 5 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 6 C 0.09 1.70 5.79 86.36 0.50 2.20 16 7 N -1.00 -21.90 3.27 -511.62 -1.67 -23.58 16 8 S 2.62 74.62 5.42 -56.49 -0.31 74.31 16 9 O -0.98 -32.82 16.81 -127.65 -2.15 -34.97 16 10 O -0.98 -32.49 16.81 -127.65 -2.15 -34.64 16 11 C -0.61 -18.23 6.18 71.98 0.44 -17.79 16 12 C -0.11 -4.23 5.16 30.59 0.16 -4.07 16 13 C 0.03 1.62 4.97 29.85 0.15 1.77 16 14 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 0.15 5.46 84.65 0.46 0.61 16 17 N -0.93 -55.65 13.29 21.45 0.28 -55.37 16 18 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 19 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 C 0.09 1.64 5.79 86.35 0.50 2.14 16 23 C 0.07 1.24 3.40 30.69 0.10 1.35 16 24 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 25 C -0.14 -1.97 9.57 71.98 0.69 -1.29 16 26 O -0.38 -8.04 9.99 -144.45 -1.44 -9.48 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.11 1.88 7.23 -2.39 -0.02 1.86 16 34 H 0.14 3.78 8.14 -2.39 -0.02 3.76 16 35 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 36 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 37 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 38 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 41 H 0.11 1.91 7.23 -2.38 -0.02 1.89 16 42 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -75.49 379.28 -1.02 -76.50 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.94 Total: 12.54 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 4.98 Total: -41.47 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -1.39 Total: -78.94 kcal Atomic # 8 Polarization: -81.74 SS G_CDS: -7.28 Total: -89.01 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 74.62 SS G_CDS: -0.31 Total: 74.31 kcal Total: -75.49 -1.02 -76.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249948669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.206 kcal (2) G-P(sol) polarization free energy of solvation -75.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds