Wall clock time and date at job start Fri Apr 10 2020 14:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47059 * 2 1 4 4 O 1.42892 * 109.47209 * 300.00249 * 3 2 1 5 5 C 1.52999 * 109.46977 * 240.00323 * 2 1 3 6 6 O 1.42905 * 109.46970 * 184.99825 * 5 2 1 7 7 N 1.46500 * 109.47190 * 120.00188 * 2 1 3 8 8 C 1.34776 * 119.99786 * 60.00431 * 7 2 1 9 9 O 1.21722 * 120.00523 * 359.97438 * 8 7 2 10 10 C 1.46261 * 119.99810 * 180.27920 * 8 7 2 11 11 C 1.35019 * 120.00169 * 179.72391 * 10 8 7 12 12 C 1.46959 * 120.00209 * 179.97438 * 11 10 8 13 13 C 1.40017 * 120.10027 * 359.71653 * 12 11 10 14 14 C 1.37600 * 119.89871 * 179.76963 * 13 12 11 15 15 C 1.39173 * 120.09945 * 0.50997 * 14 13 12 16 16 O 1.35570 * 119.89967 * 179.76472 * 15 14 13 17 17 C 1.34788 * 117.00091 * 174.42353 * 16 15 14 18 18 H 1.07991 * 119.99907 * 5.05912 * 17 16 15 19 19 C 1.38714 * 119.99689 * 185.05654 * 17 16 15 20 20 N 1.31507 * 120.00463 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99779 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47342 * 59.99861 * 21 19 17 23 23 H 1.48499 * 109.47262 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46907 * 299.99985 * 21 19 17 25 25 C 1.39180 * 120.20294 * 359.74773 * 15 14 13 26 26 C 1.37600 * 120.10236 * 359.97438 * 25 15 14 27 27 H 1.08999 * 109.46924 * 299.99713 * 1 2 3 28 28 H 1.08994 * 109.46793 * 59.99878 * 1 2 3 29 29 H 1.09008 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46873 * 60.00062 * 3 2 1 31 31 H 1.09001 * 109.47035 * 179.97438 * 3 2 1 32 32 H 0.96701 * 114.00109 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.47381 * 304.99604 * 5 2 1 34 34 H 1.08996 * 109.47401 * 65.00017 * 5 2 1 35 35 H 0.96703 * 114.00102 * 180.02562 * 6 5 2 36 36 H 0.96999 * 120.00112 * 239.99913 * 7 2 1 37 37 H 1.08000 * 119.99984 * 359.71397 * 10 8 7 38 38 H 1.08000 * 119.99847 * 359.97438 * 11 10 8 39 39 H 1.08005 * 120.04922 * 0.02969 * 13 12 11 40 40 H 1.08005 * 119.95289 * 180.23375 * 14 13 12 41 41 H 0.96998 * 120.00154 * 179.97438 * 20 19 17 42 42 H 1.08007 * 119.94868 * 179.97438 * 25 15 14 43 43 H 1.07997 * 120.05056 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5637 2.1161 -1.1667 5 6 2.0400 -0.7212 -1.2493 6 8 3.4642 -0.8237 -1.1921 7 7 2.0184 -0.6906 1.1961 8 6 1.6928 -1.9810 1.4093 9 8 0.9927 -2.5725 0.6083 10 6 2.1753 -2.6687 2.6066 11 6 1.8447 -3.9598 2.8230 12 6 2.3299 -4.6510 4.0257 13 6 3.1402 -3.9745 4.9456 14 6 3.5884 -4.6243 6.0727 15 6 3.2461 -5.9550 6.2936 16 8 3.6938 -6.5927 7.4031 17 6 3.2346 -7.8415 7.6184 18 1 2.6068 -8.3204 6.8817 19 6 3.5684 -8.5114 8.7863 20 7 4.3333 -7.9284 9.6832 21 14 2.9325 -10.2424 9.0844 22 1 3.4163 -11.1402 8.0051 23 1 3.4277 -10.7326 10.3958 24 1 1.4476 -10.2301 9.0898 25 6 2.4453 -6.6332 5.3793 26 6 1.9879 -5.9898 4.2523 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 1.6766 1.9563 0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.8487 3.0378 -1.2326 33 1 1.6054 -1.7198 -1.2953 34 1 1.7517 -0.1582 -2.1370 35 1 3.8573 -1.2708 -1.9541 36 1 2.5761 -0.2193 1.8347 37 1 2.7963 -2.1439 3.3175 38 1 1.2235 -4.4846 2.1122 39 1 3.4096 -2.9429 4.7728 40 1 4.2103 -4.1021 6.7847 41 1 4.5664 -8.3967 10.5000 42 1 2.1826 -7.6660 5.5547 43 1 1.3662 -6.5167 3.5436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273128308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:24 Heat of formation + Delta-G solvation = -120.231610 kcal Electronic energy + Delta-G solvation = -25770.903945 eV Core-core repulsion = 21782.481445 eV Total energy + Delta-G solvation = -3988.422500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.26296 -39.17803 -37.97103 -36.86526 -36.38598 -34.84903 -33.21686 -32.33728 -31.26541 -30.41862 -28.09058 -26.86722 -26.06514 -25.67483 -23.54675 -22.18759 -21.12937 -19.72709 -19.33693 -18.18708 -17.99340 -17.41429 -17.12120 -17.06490 -15.84987 -15.41246 -15.12113 -14.82410 -14.76577 -14.43375 -14.33196 -14.00265 -13.81994 -13.63336 -13.41979 -13.03492 -12.97635 -12.58393 -12.55108 -12.22715 -11.98839 -11.91290 -11.74819 -11.70419 -11.10548 -11.07957 -10.92551 -10.69553 -10.54327 -10.47181 -10.20674 -9.57660 -9.49817 -9.46418 -9.10703 -8.84033 -8.37496 -7.10414 -6.64511 -4.19565 1.09310 2.14185 2.57684 2.96773 3.04275 3.06032 3.08274 3.60347 3.82716 3.94854 4.12382 4.51466 4.57082 4.57861 4.92903 4.93348 5.03046 5.05683 5.21248 5.28393 5.38148 5.46069 5.54040 5.56442 5.62827 5.67936 5.69323 5.77106 6.01936 6.11798 6.14883 6.41764 6.48574 6.52761 6.62621 6.80084 6.92424 7.13671 7.15933 7.24512 7.29031 7.45833 7.59436 7.64727 7.80688 8.38153 8.80127 9.47179 10.52045 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.037819 B = 0.001913 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.185936 B =14635.364075 C =14891.301148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.184 3.816 3 C 0.078 3.922 4 O -0.565 6.565 5 C 0.067 3.933 6 O -0.570 6.570 7 N -0.717 5.717 8 C 0.566 3.434 9 O -0.557 6.557 10 C -0.280 4.280 11 C 0.038 3.962 12 C -0.198 4.198 13 C -0.043 4.043 14 C -0.200 4.200 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.393 4.393 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.268 1.268 25 C -0.242 4.242 26 C -0.035 4.035 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.383 0.617 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.377 0.623 36 H 0.399 0.601 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.274 0.726 42 H 0.131 0.869 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 15.838 -16.981 23.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.097 3.903 3 C 0.000 4.000 4 O -0.370 6.370 5 C -0.011 4.011 6 O -0.375 6.375 7 N -0.369 5.369 8 C 0.358 3.642 9 O -0.438 6.438 10 C -0.301 4.301 11 C 0.018 3.982 12 C -0.199 4.199 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.063 6.063 17 C -0.469 4.469 18 H 0.114 0.886 19 C -0.165 4.165 20 N -0.485 5.485 21 Si 0.769 3.231 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.193 1.193 25 C -0.261 4.261 26 C -0.054 4.054 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.230 0.770 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.223 0.777 36 H 0.233 0.767 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.388 15.165 -16.643 22.939 hybrid contribution 0.393 -0.300 0.115 0.508 sum -3.995 14.865 -16.528 22.585 Atomic orbital electron populations 1.22116 0.92916 1.04320 1.02395 1.20120 0.94693 0.90305 0.85142 1.22173 0.98311 0.91697 0.87844 1.86400 1.77447 1.29223 1.43944 1.22570 0.81195 1.00765 0.96614 1.86401 1.20218 1.82242 1.48656 1.45648 1.54444 1.12460 1.24374 1.18271 0.79136 0.80632 0.86132 1.90698 1.39194 1.66246 1.47690 1.22420 1.10729 0.97165 0.99807 1.22261 0.90241 0.92941 0.92788 1.18463 1.08428 0.95138 0.97881 1.20882 0.94616 0.98276 0.92346 1.20151 1.08247 0.92993 1.00501 1.19612 0.90662 0.91430 0.87277 1.83904 1.58285 1.28664 1.35492 1.21422 1.31990 0.88262 1.05220 0.88599 1.25392 0.96275 1.00402 0.94401 1.70002 1.32203 1.37906 1.08400 0.85715 0.79280 0.79788 0.78352 1.19257 1.20092 1.19254 1.21101 1.06243 1.01734 0.97072 1.20986 0.95834 0.93007 0.95541 0.92234 0.91125 0.89982 0.93119 0.92210 0.76983 0.91358 0.92652 0.77652 0.76688 0.85984 0.85960 0.86425 0.86147 0.91554 0.85137 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.26 37.16 0.31 -1.39 16 2 C 0.18 1.91 0.67 -131.82 -0.09 1.82 16 3 C 0.08 0.61 5.92 37.16 0.22 0.83 16 4 O -0.57 -4.19 12.22 -35.23 -0.43 -4.62 16 5 C 0.07 0.74 5.56 37.16 0.21 0.95 16 6 O -0.57 -6.13 12.96 -35.23 -0.46 -6.59 16 7 N -0.72 -7.86 4.87 -49.03 -0.24 -8.10 16 8 C 0.57 7.90 7.16 -13.04 -0.09 7.81 16 9 O -0.56 -9.20 12.49 5.17 0.06 -9.13 16 10 C -0.28 -3.86 9.41 -37.50 -0.35 -4.22 16 11 C 0.04 0.57 9.45 -37.19 -0.35 0.22 16 12 C -0.20 -3.39 5.87 -105.03 -0.62 -4.01 16 13 C -0.04 -0.74 9.40 -39.15 -0.37 -1.11 16 14 C -0.20 -4.01 9.97 -39.47 -0.39 -4.40 16 15 C 0.17 3.84 6.66 -38.88 -0.26 3.58 16 16 O -0.16 -4.42 9.74 0.72 0.01 -4.41 16 17 C -0.39 -10.47 9.48 30.91 0.29 -10.17 16 18 H 0.10 2.34 5.18 -52.49 -0.27 2.07 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.85 -23.88 13.67 55.48 0.76 -23.12 16 21 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 C -0.24 -5.03 9.14 -39.46 -0.36 -5.39 16 26 C -0.04 -0.63 9.78 -39.15 -0.38 -1.01 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.70 7.68 -51.93 -0.40 0.30 16 29 H 0.08 1.06 6.16 -51.92 -0.32 0.74 16 30 H 0.05 0.33 8.14 -51.92 -0.42 -0.10 16 31 H 0.06 0.47 7.82 -51.93 -0.41 0.07 16 32 H 0.38 1.10 9.12 45.56 0.42 1.51 16 33 H 0.07 0.90 6.32 -51.93 -0.33 0.57 16 34 H 0.06 0.57 7.54 -51.93 -0.39 0.18 16 35 H 0.38 2.63 9.12 45.56 0.42 3.05 16 36 H 0.40 3.46 8.45 -40.82 -0.34 3.12 16 37 H 0.12 1.46 6.07 -52.49 -0.32 1.15 16 38 H 0.12 1.84 7.52 -52.49 -0.39 1.45 16 39 H 0.12 1.65 6.16 -52.48 -0.32 1.33 16 40 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.13 2.67 5.62 -52.48 -0.29 2.38 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -32.77 362.51 -5.98 -38.75 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -3.79 Total: 12.72 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -2.34 Total: -15.48 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.52 Total: -31.21 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.82 Total: -24.75 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.77 -5.98 -38.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273128308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.486 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds