Wall clock time and date at job start Fri Apr 10 2020 14:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47059 * 2 1 4 4 O 1.42892 * 109.47209 * 300.00249 * 3 2 1 5 5 C 1.52999 * 109.46977 * 240.00323 * 2 1 3 6 6 O 1.42905 * 109.46970 * 184.99825 * 5 2 1 7 7 N 1.46500 * 109.47190 * 120.00188 * 2 1 3 8 8 C 1.34776 * 119.99786 * 60.00431 * 7 2 1 9 9 O 1.21722 * 120.00523 * 359.97438 * 8 7 2 10 10 C 1.46261 * 119.99810 * 180.27920 * 8 7 2 11 11 C 1.35019 * 120.00169 * 179.72391 * 10 8 7 12 12 C 1.46959 * 120.00209 * 179.97438 * 11 10 8 13 13 C 1.40017 * 120.10027 * 359.71653 * 12 11 10 14 14 C 1.37600 * 119.89871 * 179.76963 * 13 12 11 15 15 C 1.39173 * 120.09945 * 0.50997 * 14 13 12 16 16 O 1.35570 * 119.89967 * 179.76472 * 15 14 13 17 17 C 1.34788 * 117.00091 * 174.42353 * 16 15 14 18 18 H 1.07991 * 119.99907 * 5.05912 * 17 16 15 19 19 C 1.38714 * 119.99689 * 185.05654 * 17 16 15 20 20 N 1.31507 * 120.00463 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99779 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47342 * 59.99861 * 21 19 17 23 23 H 1.48499 * 109.47262 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46907 * 299.99985 * 21 19 17 25 25 C 1.39180 * 120.20294 * 359.74773 * 15 14 13 26 26 C 1.37600 * 120.10236 * 359.97438 * 25 15 14 27 27 H 1.08999 * 109.46924 * 299.99713 * 1 2 3 28 28 H 1.08994 * 109.46793 * 59.99878 * 1 2 3 29 29 H 1.09008 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46873 * 60.00062 * 3 2 1 31 31 H 1.09001 * 109.47035 * 179.97438 * 3 2 1 32 32 H 0.96701 * 114.00109 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.47381 * 304.99604 * 5 2 1 34 34 H 1.08996 * 109.47401 * 65.00017 * 5 2 1 35 35 H 0.96703 * 114.00102 * 180.02562 * 6 5 2 36 36 H 0.96999 * 120.00112 * 239.99913 * 7 2 1 37 37 H 1.08000 * 119.99984 * 359.71397 * 10 8 7 38 38 H 1.08000 * 119.99847 * 359.97438 * 11 10 8 39 39 H 1.08005 * 120.04922 * 0.02969 * 13 12 11 40 40 H 1.08005 * 119.95289 * 180.23375 * 14 13 12 41 41 H 0.96998 * 120.00154 * 179.97438 * 20 19 17 42 42 H 1.08007 * 119.94868 * 179.97438 * 25 15 14 43 43 H 1.07997 * 120.05056 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5637 2.1161 -1.1667 5 6 2.0400 -0.7212 -1.2493 6 8 3.4642 -0.8237 -1.1921 7 7 2.0184 -0.6906 1.1961 8 6 1.6928 -1.9810 1.4093 9 8 0.9927 -2.5725 0.6083 10 6 2.1753 -2.6687 2.6066 11 6 1.8447 -3.9598 2.8230 12 6 2.3299 -4.6510 4.0257 13 6 3.1402 -3.9745 4.9456 14 6 3.5884 -4.6243 6.0727 15 6 3.2461 -5.9550 6.2936 16 8 3.6938 -6.5927 7.4031 17 6 3.2346 -7.8415 7.6184 18 1 2.6068 -8.3204 6.8817 19 6 3.5684 -8.5114 8.7863 20 7 4.3333 -7.9284 9.6832 21 14 2.9325 -10.2424 9.0844 22 1 3.4163 -11.1402 8.0051 23 1 3.4277 -10.7326 10.3958 24 1 1.4476 -10.2301 9.0898 25 6 2.4453 -6.6332 5.3793 26 6 1.9879 -5.9898 4.2523 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 1.6766 1.9563 0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.8487 3.0378 -1.2326 33 1 1.6054 -1.7198 -1.2953 34 1 1.7517 -0.1582 -2.1370 35 1 3.8573 -1.2708 -1.9541 36 1 2.5761 -0.2193 1.8347 37 1 2.7963 -2.1439 3.3175 38 1 1.2235 -4.4846 2.1122 39 1 3.4096 -2.9429 4.7728 40 1 4.2103 -4.1021 6.7847 41 1 4.5664 -8.3967 10.5000 42 1 2.1826 -7.6660 5.5547 43 1 1.3662 -6.5167 3.5436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273128308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:22 Heat of formation + Delta-G solvation = -147.450487 kcal Electronic energy + Delta-G solvation = -25772.084244 eV Core-core repulsion = 21782.481445 eV Total energy + Delta-G solvation = -3989.602799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.26611 -40.79850 -38.92519 -38.36825 -37.09973 -35.73162 -34.72610 -34.01559 -32.26761 -31.94920 -29.52767 -27.63115 -27.46426 -26.86076 -24.85948 -23.71886 -22.43544 -20.71999 -20.62777 -19.75447 -18.84063 -18.62101 -18.34796 -18.08753 -16.79241 -16.50038 -16.43098 -16.15836 -15.88251 -15.80639 -15.60401 -15.51960 -15.06996 -14.83369 -14.58685 -14.35214 -14.09516 -13.76544 -13.58450 -13.39264 -13.30054 -13.15889 -13.04949 -12.78920 -12.67258 -12.54836 -12.22195 -12.13930 -11.69807 -11.22723 -11.21159 -11.07625 -10.93605 -10.55962 -10.50339 -10.05214 -9.88690 -8.67024 -8.51659 -6.17920 -0.22400 0.59000 1.15860 1.35848 1.47625 1.51625 2.08824 2.15744 2.40780 2.87080 3.18453 3.22847 3.42999 3.48469 3.73704 3.84540 3.95182 4.04776 4.09303 4.25655 4.32703 4.37188 4.48358 4.53942 4.56780 4.66111 4.71502 4.74207 4.83183 4.93465 4.95521 5.03814 5.20214 5.24579 5.33994 5.34930 5.55388 5.60953 5.64534 5.82765 5.97645 6.11221 6.63044 6.79355 6.88548 6.92500 7.33149 7.69719 8.70139 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.037819 B = 0.001913 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.185936 B =14635.364075 C =14891.301148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.174 3.826 3 C 0.087 3.913 4 O -0.580 6.580 5 C 0.072 3.928 6 O -0.580 6.580 7 N -0.701 5.701 8 C 0.558 3.442 9 O -0.583 6.583 10 C -0.244 4.244 11 C 0.015 3.985 12 C -0.170 4.170 13 C -0.038 4.038 14 C -0.207 4.207 15 C 0.129 3.871 16 O -0.220 6.220 17 C -0.417 4.417 18 H 0.105 0.895 19 C -0.019 4.019 20 N -0.914 5.914 21 Si 1.018 2.982 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.249 4.249 26 C -0.041 4.041 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.403 0.597 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.392 0.608 36 H 0.413 0.587 37 H 0.149 0.851 38 H 0.125 0.875 39 H 0.159 0.841 40 H 0.123 0.877 41 H 0.275 0.725 42 H 0.125 0.875 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.614 18.239 -19.556 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.088 3.912 3 C 0.008 3.992 4 O -0.388 6.388 5 C -0.007 4.007 6 O -0.387 6.387 7 N -0.354 5.354 8 C 0.349 3.651 9 O -0.465 6.465 10 C -0.265 4.265 11 C -0.005 4.005 12 C -0.170 4.170 13 C -0.056 4.056 14 C -0.226 4.226 15 C 0.077 3.923 16 O -0.125 6.125 17 C -0.493 4.493 18 H 0.123 0.877 19 C -0.218 4.218 20 N -0.550 5.550 21 Si 0.837 3.163 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.268 4.268 26 C -0.059 4.059 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.254 0.746 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.241 0.759 36 H 0.250 0.750 37 H 0.166 0.834 38 H 0.143 0.857 39 H 0.177 0.823 40 H 0.141 0.859 41 H 0.084 0.916 42 H 0.143 0.857 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.203 17.643 -19.290 26.654 hybrid contribution 0.536 -0.561 0.373 0.861 sum -4.667 17.082 -18.917 25.912 Atomic orbital electron populations 1.22034 0.93217 1.02770 1.03128 1.20293 0.94551 0.91993 0.84401 1.22037 0.98260 0.90048 0.88825 1.86350 1.77694 1.30965 1.43782 1.22451 0.81327 0.99497 0.97385 1.86353 1.19915 1.82541 1.49914 1.45534 1.53575 1.11523 1.24719 1.18375 0.79145 0.81567 0.85964 1.90717 1.40247 1.67090 1.48482 1.22763 1.08000 0.96451 0.99257 1.22141 0.92095 0.93745 0.92519 1.18787 1.05876 0.94672 0.97712 1.21281 0.93542 0.99926 0.90835 1.20422 1.08338 0.92147 1.01717 1.20188 0.92091 0.92840 0.87186 1.83886 1.61224 1.29425 1.37940 1.21854 1.32667 0.88807 1.05973 0.87734 1.26614 0.96436 1.04852 0.93875 1.70140 1.35325 1.40136 1.09439 0.84648 0.78975 0.74203 0.78443 1.18113 1.19596 1.18152 1.21206 1.06155 1.01729 0.97731 1.21315 0.95875 0.93660 0.95029 0.91370 0.90550 0.92562 0.91206 0.92009 0.74611 0.93930 0.92012 0.75907 0.75005 0.83355 0.85699 0.82331 0.85945 0.91595 0.85745 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.26 71.98 0.59 -2.32 16 2 C 0.17 3.09 0.67 3.60 0.00 3.10 16 3 C 0.09 1.03 5.92 71.98 0.43 1.46 16 4 O -0.58 -6.59 12.22 -148.98 -1.82 -8.41 16 5 C 0.07 1.44 5.56 71.98 0.40 1.84 16 6 O -0.58 -10.90 12.96 -148.98 -1.93 -12.83 16 7 N -0.70 -12.74 4.87 -427.23 -2.08 -14.82 16 8 C 0.56 13.68 7.16 86.33 0.62 14.30 16 9 O -0.58 -17.99 12.49 -4.42 -0.06 -18.04 16 10 C -0.24 -5.63 9.41 23.62 0.22 -5.41 16 11 C 0.01 0.40 9.45 23.82 0.23 0.62 16 12 C -0.17 -5.30 5.87 -20.13 -0.12 -5.42 16 13 C -0.04 -1.20 9.40 22.55 0.21 -0.99 16 14 C -0.21 -8.29 9.97 22.34 0.22 -8.07 16 15 C 0.13 6.17 6.66 22.72 0.15 6.32 16 16 O -0.22 -12.76 9.74 -20.34 -0.20 -12.96 16 17 C -0.42 -23.53 9.48 67.93 0.64 -22.89 16 18 H 0.11 5.38 5.18 -2.92 -0.02 5.36 16 19 C -0.02 -1.05 5.49 84.86 0.47 -0.58 16 20 N -0.91 -54.48 13.67 21.62 0.30 -54.18 16 21 Si 1.02 41.56 29.55 68.60 2.03 43.58 16 22 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 25 C -0.25 -10.48 9.14 22.35 0.20 -10.28 16 26 C -0.04 -1.39 9.78 22.55 0.22 -1.17 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.35 7.68 -2.39 -0.02 1.33 16 29 H 0.06 1.37 6.16 -2.38 -0.01 1.36 16 30 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.06 0.73 7.82 -2.39 -0.02 0.71 16 32 H 0.40 0.87 9.12 -74.06 -0.68 0.19 16 33 H 0.04 1.07 6.32 -2.39 -0.02 1.06 16 34 H 0.06 1.15 7.54 -2.39 -0.02 1.13 16 35 H 0.39 4.56 9.12 -74.05 -0.68 3.89 16 36 H 0.41 5.21 8.45 -92.71 -0.78 4.42 16 37 H 0.15 2.64 6.07 -2.91 -0.02 2.62 16 38 H 0.13 3.38 7.52 -2.91 -0.02 3.36 16 39 H 0.16 3.63 6.16 -2.91 -0.02 3.61 16 40 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 41 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.12 5.29 5.62 -2.91 -0.02 5.27 16 43 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -76.16 362.51 -0.31 -76.47 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -1.04 Total: 30.66 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 4.49 Total: -29.48 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: -1.78 Total: -69.00 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -4.00 Total: -52.24 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -76.16 -0.31 -76.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273128308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.977 kcal (2) G-P(sol) polarization free energy of solvation -76.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds