Wall clock time and date at job start Fri Apr 10 2020 14:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.82511 * 2 1 4 4 O 1.43238 * 109.82774 * 239.01900 * 2 1 3 5 5 C 1.43655 * 109.97048 * 238.77575 * 4 2 1 6 6 C 1.54949 * 105.13480 * 24.42984 * 5 4 2 7 7 C 1.54385 * 109.82792 * 120.88658 * 2 1 3 8 8 O 1.42903 * 110.84842 * 216.54612 * 7 2 1 9 9 C 1.52994 * 110.84902 * 339.96547 * 7 2 1 10 10 N 1.46500 * 109.47228 * 180.02562 * 9 7 2 11 11 C 1.34784 * 120.00039 * 179.97438 * 10 9 7 12 12 O 1.21588 * 119.99674 * 0.02562 * 11 10 9 13 13 C 1.47535 * 119.99957 * 179.97438 * 11 10 9 14 14 C 1.39664 * 120.19535 * 0.02562 * 13 11 10 15 15 C 1.37827 * 119.91947 * 179.72502 * 14 13 11 16 16 C 1.38572 * 120.32307 * 0.02562 * 15 14 13 17 17 C 1.38032 * 120.39979 * 0.02562 * 16 15 14 18 18 C 1.38829 * 120.06998 * 359.95231 * 17 16 15 19 19 O 1.35522 * 120.15684 * 180.02562 * 18 17 16 20 20 C 1.34813 * 117.00082 * 354.39374 * 19 18 17 21 21 H 1.07996 * 120.00212 * 5.07210 * 20 19 18 22 22 C 1.38698 * 120.00108 * 185.06270 * 20 19 18 23 23 N 1.31521 * 119.99910 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00239 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47101 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47161 * 120.00254 * 24 22 20 27 27 H 1.48501 * 109.47639 * 240.00305 * 24 22 20 28 28 H 1.09001 * 109.47197 * 299.11938 * 1 2 3 29 29 H 1.08999 * 109.47016 * 59.11118 * 1 2 3 30 30 H 1.08996 * 109.47573 * 179.11292 * 1 2 3 31 31 H 1.08994 * 110.30758 * 143.34171 * 5 4 2 32 32 H 1.08996 * 110.30825 * 265.41654 * 5 4 2 33 33 H 1.08994 * 111.12526 * 205.63472 * 6 5 4 34 34 H 1.09004 * 111.12565 * 81.47099 * 6 5 4 35 35 H 0.96696 * 114.00159 * 182.77579 * 8 7 2 36 36 H 1.09001 * 109.47290 * 59.99945 * 9 7 2 37 37 H 1.09004 * 109.47202 * 299.99741 * 9 7 2 38 38 H 0.96996 * 120.00217 * 0.02562 * 10 9 7 39 39 H 1.08002 * 120.04150 * 359.73982 * 14 13 11 40 40 H 1.07999 * 119.84318 * 180.02562 * 15 14 13 41 41 H 1.07996 * 119.80125 * 179.97438 * 16 15 14 42 42 H 1.07999 * 119.95858 * 180.02562 * 17 16 15 43 43 H 0.96997 * 120.00415 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 8 2.0158 -0.6936 -1.1552 5 6 2.8407 -1.7989 -0.7531 6 6 2.3680 -2.1565 0.6786 7 6 2.0536 -0.7455 1.2464 8 8 3.2354 -0.1219 1.7529 9 6 0.9747 -0.8220 2.3284 10 7 1.5028 -1.5333 3.4952 11 6 0.7241 -1.7216 4.5791 12 8 -0.4169 -1.3015 4.5882 13 6 1.2557 -2.4384 5.7538 14 6 2.5655 -2.9232 5.7475 15 6 3.0582 -3.5871 6.8502 16 6 2.2600 -3.7771 7.9669 17 6 0.9632 -3.3045 7.9871 18 6 0.4503 -2.6331 6.8855 19 8 -0.8224 -2.1679 6.9037 20 6 -1.5766 -2.4898 7.9738 21 1 -1.1367 -3.0225 8.8038 22 6 -2.9174 -2.1367 8.0088 23 7 -3.4532 -1.4881 6.9978 24 14 -3.9625 -2.5833 9.4912 25 1 -3.1287 -3.3061 10.4850 26 1 -4.5034 -1.3449 10.1068 27 1 -5.0861 -3.4536 9.0607 28 1 -0.3633 0.5001 0.8978 29 1 -0.3633 0.5276 -0.8819 30 1 -0.3634 -1.0275 -0.0159 31 1 2.6918 -2.6455 -1.4232 32 1 3.8900 -1.5042 -0.7441 33 1 3.1635 -2.6399 1.2456 34 1 1.4728 -2.7780 0.6530 35 1 3.6270 -0.5778 2.5103 36 1 0.1072 -1.3551 1.9394 37 1 0.6808 0.1862 2.6204 38 1 2.4131 -1.8682 3.4880 39 1 3.1916 -2.7778 4.8796 40 1 4.0714 -3.9610 6.8441 41 1 2.6545 -4.2989 8.8262 42 1 0.3475 -3.4562 8.8613 43 1 -4.3910 -1.2415 7.0221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279415985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:20 Heat of formation + Delta-G solvation = -121.256630 kcal Electronic energy + Delta-G solvation = -27478.627007 eV Core-core repulsion = 23490.160059 eV Total energy + Delta-G solvation = -3988.466948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.64857 -39.53620 -38.09418 -36.55809 -36.38543 -34.00718 -32.40442 -32.29943 -31.27912 -30.45251 -28.98905 -26.90111 -25.46259 -24.99327 -23.01638 -22.50219 -21.45781 -20.11783 -20.00563 -18.19156 -17.94095 -17.42493 -16.45259 -16.26712 -15.82193 -15.41212 -15.31545 -14.88756 -14.67875 -14.31598 -14.20172 -13.87509 -13.82715 -13.45812 -13.32340 -13.05190 -12.80645 -12.58094 -12.53576 -12.31440 -12.01936 -11.76310 -11.72123 -11.50474 -11.37006 -11.18893 -10.96125 -10.86773 -10.68790 -10.47872 -10.26765 -9.78545 -9.63409 -8.95737 -8.92680 -8.71660 -8.34271 -7.37205 -6.49262 -4.09237 1.64286 2.25486 3.08952 3.09691 3.15588 3.42332 3.51499 3.64131 3.71634 3.89579 4.16503 4.36559 4.57370 4.65828 4.84672 4.96922 5.00853 5.11132 5.15123 5.26858 5.35785 5.38989 5.43762 5.44705 5.59316 5.62753 5.66177 5.71272 5.83387 5.88901 6.02272 6.05127 6.08596 6.49219 6.61046 6.73132 6.76963 6.84694 6.99597 7.17558 7.23918 7.28132 7.62958 7.84975 7.96606 8.90192 8.98357 9.61888 10.64496 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.003456 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.843693 B = 8099.823897 C = 9584.021569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.097 3.903 3 H 0.092 0.908 4 O -0.376 6.376 5 C 0.056 3.944 6 C -0.182 4.182 7 C 0.092 3.908 8 O -0.544 6.544 9 C 0.107 3.893 10 N -0.745 5.745 11 C 0.556 3.444 12 O -0.497 6.497 13 C -0.229 4.229 14 C -0.039 4.039 15 C -0.230 4.230 16 C -0.050 4.050 17 C -0.237 4.237 18 C 0.189 3.811 19 O -0.123 6.123 20 C -0.404 4.404 21 H 0.095 0.905 22 C 0.045 3.955 23 N -0.831 5.831 24 Si 0.941 3.059 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.378 0.622 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.386 0.614 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.552 -2.060 -9.473 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.109 0.891 4 O -0.295 6.295 5 C -0.020 4.020 6 C -0.220 4.220 7 C 0.051 3.949 8 O -0.350 6.350 9 C -0.017 4.017 10 N -0.403 5.403 11 C 0.346 3.654 12 O -0.370 6.370 13 C -0.234 4.234 14 C -0.057 4.057 15 C -0.250 4.250 16 C -0.069 4.069 17 C -0.256 4.256 18 C 0.129 3.871 19 O -0.021 6.021 20 C -0.480 4.480 21 H 0.112 0.888 22 C -0.163 4.163 23 N -0.463 5.463 24 Si 0.765 3.235 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.227 0.773 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.221 0.779 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.150 0.850 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.076 -0.996 -10.390 15.219 hybrid contribution 0.283 -0.977 1.520 1.829 sum 11.359 -1.973 -8.870 14.546 Atomic orbital electron populations 1.22250 0.93362 1.03415 1.03408 1.22538 0.94594 0.96615 0.82325 0.89055 1.88443 1.67490 1.43992 1.29593 1.23311 0.94869 0.89268 0.94580 1.23947 1.03424 0.97293 0.97352 1.22971 0.85894 0.92122 0.93952 1.86562 1.41435 1.55210 1.51831 1.21907 0.95949 0.98607 0.85249 1.45844 1.16667 1.61527 1.16236 1.18223 0.85427 0.79769 0.81997 1.90960 1.17058 1.48150 1.80835 1.18799 0.95731 1.13929 0.94906 1.20708 0.92836 0.95097 0.97107 1.20456 1.00126 1.08931 0.95443 1.20906 0.93198 0.95819 0.96962 1.21173 0.97102 1.07122 1.00188 1.19260 0.86339 0.89847 0.91618 1.84167 1.16658 1.59841 1.41460 1.21556 0.91516 1.38833 0.96069 0.88774 1.25394 0.96145 0.96096 0.98668 1.70132 1.13425 1.33418 1.29290 0.85655 0.79564 0.78603 0.79637 1.18948 1.19974 1.19972 0.90238 0.91225 0.91562 0.89656 0.91807 0.89337 0.88901 0.77327 0.90040 0.90500 0.77929 0.87307 0.87249 0.87138 0.85029 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 8.31 37.16 0.31 -1.49 16 2 C 0.10 1.11 3.88 -26.01 -0.10 1.01 16 3 H 0.09 1.06 8.07 -51.93 -0.42 0.64 16 4 O -0.38 -4.50 11.02 -35.23 -0.39 -4.89 16 5 C 0.06 0.53 7.78 38.19 0.30 0.82 16 6 C -0.18 -1.67 6.09 -24.48 -0.15 -1.81 16 7 C 0.09 1.00 0.87 -88.67 -0.08 0.92 16 8 O -0.54 -5.85 13.12 -35.23 -0.46 -6.31 16 9 C 0.11 1.46 3.57 -4.04 -0.01 1.44 16 10 N -0.75 -10.96 5.17 -61.35 -0.32 -11.28 16 11 C 0.56 11.65 7.76 -12.47 -0.10 11.55 16 12 O -0.50 -13.18 15.17 -16.56 -0.25 -13.43 16 13 C -0.23 -4.76 5.89 -104.82 -0.62 -5.38 16 14 C -0.04 -0.62 9.53 -39.20 -0.37 -0.99 16 15 C -0.23 -3.58 10.02 -39.61 -0.40 -3.98 16 16 C -0.05 -0.85 10.03 -39.53 -0.40 -1.25 16 17 C -0.24 -4.95 9.16 -39.44 -0.36 -5.31 16 18 C 0.19 4.58 6.66 -38.60 -0.26 4.32 16 19 O -0.12 -3.57 7.84 -21.06 -0.17 -3.74 16 20 C -0.40 -11.26 9.49 30.90 0.29 -10.96 16 21 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 22 C 0.04 1.23 5.49 -17.51 -0.10 1.14 16 23 N -0.83 -24.73 13.67 55.48 0.76 -23.98 16 24 Si 0.94 20.24 29.55 -169.99 -5.02 15.21 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 28 H 0.08 0.88 6.66 -51.93 -0.35 0.53 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.89 8.01 -51.93 -0.42 0.47 16 35 H 0.38 2.95 7.77 45.56 0.35 3.31 16 36 H 0.08 1.18 6.63 -51.93 -0.34 0.84 16 37 H 0.08 1.17 7.54 -51.93 -0.39 0.78 16 38 H 0.39 4.28 5.31 -40.82 -0.22 4.07 16 39 H 0.11 1.27 6.40 -52.49 -0.34 0.93 16 40 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -35.15 353.13 -7.31 -42.46 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -4.75 Total: 10.59 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.04 Total: -9.97 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.44 Total: -35.25 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -1.27 Total: -28.37 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.15 -7.31 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279415985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.792 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds