Wall clock time and date at job start Fri Apr 10 2020 14:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99670 * 2 1 4 4 C 1.53001 * 109.47230 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47418 * 179.97438 * 4 3 2 6 6 H 1.09008 * 109.47225 * 304.99617 * 5 4 3 7 7 C 1.52995 * 109.47420 * 64.99707 * 5 4 3 8 8 C 1.53001 * 109.47275 * 184.99919 * 5 4 3 9 9 C 1.53003 * 109.47201 * 174.99826 * 8 5 4 10 10 S 1.81401 * 109.47004 * 179.97438 * 9 8 5 11 11 O 1.42096 * 110.54430 * 68.37445 * 10 9 8 12 12 O 1.42106 * 110.54350 * 291.62336 * 10 9 8 13 13 N 1.65597 * 104.44835 * 180.02562 * 10 9 8 14 14 C 1.47583 * 134.49625 * 89.99868 * 13 10 9 15 15 C 1.53945 * 86.11541 * 204.65555 * 14 13 10 16 16 O 1.42903 * 113.74155 * 90.74233 * 15 14 13 17 17 C 1.50704 * 113.74101 * 221.93630 * 15 14 13 18 18 H 1.07996 * 119.99852 * 358.07848 * 17 15 14 19 19 C 1.37883 * 119.99641 * 178.07674 * 17 15 14 20 20 N 1.31510 * 120.00287 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 119.99749 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47063 * 90.00014 * 21 19 17 23 23 H 1.48503 * 109.47292 * 210.00273 * 21 19 17 24 24 H 1.48506 * 109.47342 * 330.00355 * 21 19 17 25 25 C 1.47935 * 134.49889 * 270.02804 * 13 10 9 26 26 H 1.08998 * 109.47003 * 60.00754 * 1 2 3 27 27 H 1.08999 * 109.46903 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47211 * 299.99963 * 1 2 3 29 29 H 1.08993 * 109.47442 * 59.99619 * 3 2 1 30 30 H 1.09007 * 109.47178 * 299.99410 * 3 2 1 31 31 H 1.09001 * 109.47043 * 59.99203 * 4 3 2 32 32 H 1.09006 * 109.46981 * 299.99832 * 4 3 2 33 33 H 1.08998 * 109.47042 * 59.99834 * 7 5 4 34 34 H 1.09001 * 109.47276 * 180.02562 * 7 5 4 35 35 H 1.09008 * 109.47239 * 300.00084 * 7 5 4 36 36 H 1.09004 * 109.47199 * 54.99815 * 8 5 4 37 37 H 1.09004 * 109.47212 * 294.99931 * 8 5 4 38 38 H 1.09004 * 109.47053 * 59.99899 * 9 8 5 39 39 H 1.08994 * 109.47215 * 299.99610 * 9 8 5 40 40 H 1.08996 * 113.76772 * 90.35847 * 14 13 10 41 41 H 1.08991 * 113.86922 * 318.97249 * 14 13 10 42 42 H 0.96700 * 114.00311 * 181.92380 * 16 15 14 43 43 H 0.96996 * 120.00241 * 179.97438 * 20 19 17 44 44 H 1.08997 * 113.86757 * 41.07692 * 25 13 10 45 45 H 1.09004 * 113.76551 * 269.58583 * 25 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 6 4.1577 2.5825 -0.0013 6 1 3.7666 3.1539 -0.8432 7 6 3.8088 3.2967 1.3059 8 6 5.6779 2.4639 -0.1276 9 6 6.2896 3.8607 -0.2537 10 16 8.0920 3.7201 -0.4028 11 8 8.4450 3.1289 -1.6457 12 8 8.6586 3.2576 0.8156 13 7 8.6194 5.2847 -0.5296 14 6 9.0396 6.3163 0.4386 15 6 8.6377 7.3409 -0.6378 16 8 7.2790 7.7730 -0.5420 17 6 9.6091 8.4844 -0.7797 18 1 10.4727 8.5426 -0.1338 19 6 9.3952 9.4562 -1.7342 20 7 8.3434 9.3855 -2.5204 21 14 10.5996 10.8731 -1.9106 22 1 11.6600 10.5033 -2.8821 23 1 9.8796 12.0770 -2.3980 24 1 11.2167 11.1654 -0.5918 25 6 8.8580 6.2101 -1.6588 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8901 31 1 3.8567 0.6439 -0.8908 32 1 3.8575 0.6437 0.8892 33 1 4.1998 2.7253 2.1477 34 1 4.2517 4.2927 1.3052 35 1 2.7257 3.3812 1.3959 36 1 5.9243 1.8780 -1.0132 37 1 6.0787 1.9703 0.7577 38 1 6.0432 4.4465 0.6318 39 1 5.8889 4.3542 -1.1390 40 1 10.1074 6.3047 0.6571 41 1 8.4222 6.3566 1.3359 42 1 7.0141 8.3944 -1.2340 43 1 8.1927 10.0693 -3.1916 44 1 8.0946 6.1645 -2.4354 45 1 9.8727 6.1674 -2.0549 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349535168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:51 Heat of formation + Delta-G solvation = -151.042955 kcal Electronic energy + Delta-G solvation = -25712.822692 eV Core-core repulsion = 21858.508063 eV Total energy + Delta-G solvation = -3854.314629 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.58198 -38.44268 -36.93863 -36.64431 -35.52366 -33.89873 -32.19961 -31.97680 -28.77556 -27.79258 -26.70097 -25.39855 -25.27560 -24.57976 -22.39879 -20.23880 -19.54452 -18.23897 -17.55595 -16.86071 -16.57623 -16.39654 -16.00959 -15.98963 -15.42527 -15.20047 -14.93138 -14.26914 -14.10843 -13.79938 -13.56840 -13.26099 -13.14228 -13.00314 -12.81558 -12.15883 -12.13581 -12.10910 -11.73448 -11.65769 -11.63032 -11.61733 -11.50434 -11.42868 -11.20572 -11.11148 -10.88816 -10.80881 -10.78180 -10.53363 -10.32720 -10.21063 -9.93655 -9.29656 -8.76683 -8.54973 -8.05269 -6.36703 -4.45783 0.64457 3.10710 3.16525 3.24581 3.28100 3.42395 4.18656 4.22452 4.41509 4.52943 4.58942 4.62243 4.83972 4.89248 4.93970 5.00222 5.04060 5.13868 5.17258 5.25608 5.32285 5.38929 5.45924 5.49178 5.63352 5.65892 5.80201 5.82802 5.90399 6.07206 6.09997 6.15132 6.17920 6.28044 6.42614 6.65445 6.74658 6.84618 7.02840 7.53957 7.67349 7.86439 8.57044 9.24329 9.41444 10.69877 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021336 B = 0.002703 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.001884 B =10355.324718 C =11095.456889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.059 3.941 4 C -0.117 4.117 5 C -0.080 4.080 6 H 0.078 0.922 7 C -0.157 4.157 8 C -0.106 4.106 9 C -0.628 4.628 10 S 2.623 3.377 11 O -0.966 6.966 12 O -0.969 6.969 13 N -1.039 6.039 14 C 0.137 3.863 15 C 0.239 3.761 16 O -0.576 6.576 17 C -0.535 4.535 18 H 0.071 0.929 19 C 0.071 3.929 20 N -0.899 5.899 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.271 1.271 25 C 0.112 3.888 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.065 0.935 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 -11.214 3.849 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.155 4.155 5 C -0.100 4.100 6 H 0.096 0.904 7 C -0.214 4.214 8 C -0.145 4.145 9 C -0.756 4.756 10 S 2.720 3.280 11 O -0.957 6.957 12 O -0.959 6.959 13 N -0.880 5.880 14 C 0.012 3.988 15 C 0.196 3.804 16 O -0.388 6.388 17 C -0.574 4.574 18 H 0.089 0.911 19 C -0.131 4.131 20 N -0.540 5.540 21 Si 0.734 3.266 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.013 4.013 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.246 0.754 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.584 -12.681 4.224 17.687 hybrid contribution -0.298 1.720 -0.740 1.896 sum -11.882 -10.961 3.483 16.537 Atomic orbital electron populations 1.22732 0.81110 1.02684 0.99976 1.87869 1.19659 1.28385 1.95442 1.22649 0.94266 0.84433 1.00395 1.21610 0.92932 0.97268 1.03698 1.21005 0.94080 0.95530 0.99362 0.90365 1.22008 1.01364 1.01178 0.96850 1.21356 0.96384 0.93397 1.03337 1.30696 1.27503 1.05274 1.12160 1.04343 0.77367 0.72465 0.73860 1.93544 1.81866 1.75581 1.44693 1.93536 1.75305 1.79608 1.47495 1.59975 1.79665 1.29259 1.19060 1.22949 0.99140 0.83555 0.93143 1.20023 0.81934 0.89584 0.88900 1.85993 1.27979 1.67261 1.57532 1.21582 1.09292 1.08059 1.18513 0.91096 1.25066 0.95601 0.98010 0.94452 1.69386 1.27727 1.35605 1.21259 0.86358 0.80655 0.81001 0.78624 1.20365 1.21021 1.19605 1.23798 1.00275 0.86827 0.90426 0.94083 0.89690 0.94121 0.92927 0.93262 0.90793 0.90785 0.92261 0.91713 0.92516 0.90370 0.90399 0.84798 0.84896 0.89703 0.91477 0.75369 0.91779 0.91648 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.08 10.70 -35.23 -0.38 -4.45 16 3 C 0.06 0.53 5.69 37.16 0.21 0.74 16 4 C -0.12 -1.10 5.05 -26.74 -0.14 -1.24 16 5 C -0.08 -0.79 2.39 -90.63 -0.22 -1.01 16 6 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 7 C -0.16 -1.49 8.70 37.15 0.32 -1.17 16 8 C -0.11 -1.23 4.69 -26.73 -0.13 -1.35 16 9 C -0.63 -8.46 5.93 37.16 0.22 -8.24 16 10 S 2.62 46.22 5.93 -107.50 -0.64 45.58 16 11 O -0.97 -19.52 18.03 -57.54 -1.04 -20.56 16 12 O -0.97 -19.07 18.02 -57.54 -1.04 -20.11 16 13 N -1.04 -20.46 4.00 -118.43 -0.47 -20.93 16 14 C 0.14 2.77 8.30 -2.97 -0.02 2.75 16 15 C 0.24 5.47 1.40 -90.85 -0.13 5.35 16 16 O -0.58 -13.56 13.48 -35.23 -0.48 -14.04 16 17 C -0.54 -13.17 8.61 -34.44 -0.30 -13.46 16 18 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 19 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 20 N -0.90 -22.39 11.20 55.43 0.62 -21.77 16 21 Si 0.91 19.35 29.54 -169.99 -5.02 14.33 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 C 0.11 2.42 8.33 -2.77 -0.02 2.40 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.43 6.57 -51.93 -0.34 0.09 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.66 6.57 -51.93 -0.34 0.32 16 35 H 0.06 0.47 6.57 -51.92 -0.34 0.13 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.13 1.70 6.57 -51.92 -0.34 1.36 16 39 H 0.13 1.71 8.14 -51.93 -0.42 1.29 16 40 H 0.08 1.62 8.09 -51.93 -0.42 1.20 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.39 9.51 6.60 45.56 0.30 9.81 16 43 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.08 1.72 8.09 -51.93 -0.42 1.30 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -29.92 378.75 -8.85 -38.77 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.94 Total: 9.71 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 0.82 Total: -12.25 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.15 Total: -42.70 kcal Atomic # 8 Polarization: -56.23 SS G_CDS: -2.93 Total: -59.16 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 46.22 SS G_CDS: -0.64 Total: 45.58 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.92 -8.85 -38.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349535168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.275 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds