Wall clock time and date at job start Fri Apr 10 2020 14:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99670 * 2 1 4 4 C 1.53001 * 109.47230 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47418 * 179.97438 * 4 3 2 6 6 H 1.09008 * 109.47225 * 304.99617 * 5 4 3 7 7 C 1.52995 * 109.47420 * 64.99707 * 5 4 3 8 8 C 1.53001 * 109.47275 * 184.99919 * 5 4 3 9 9 C 1.53003 * 109.47201 * 174.99826 * 8 5 4 10 10 S 1.81401 * 109.47004 * 179.97438 * 9 8 5 11 11 O 1.42096 * 110.54430 * 68.37445 * 10 9 8 12 12 O 1.42106 * 110.54350 * 291.62336 * 10 9 8 13 13 N 1.65597 * 104.44835 * 180.02562 * 10 9 8 14 14 C 1.47583 * 134.49625 * 89.99868 * 13 10 9 15 15 C 1.53945 * 86.11541 * 204.65555 * 14 13 10 16 16 O 1.42903 * 113.74155 * 90.74233 * 15 14 13 17 17 C 1.50704 * 113.74101 * 221.93630 * 15 14 13 18 18 H 1.07996 * 119.99852 * 358.07848 * 17 15 14 19 19 C 1.37883 * 119.99641 * 178.07674 * 17 15 14 20 20 N 1.31510 * 120.00287 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 119.99749 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47063 * 90.00014 * 21 19 17 23 23 H 1.48503 * 109.47292 * 210.00273 * 21 19 17 24 24 H 1.48506 * 109.47342 * 330.00355 * 21 19 17 25 25 C 1.47935 * 134.49889 * 270.02804 * 13 10 9 26 26 H 1.08998 * 109.47003 * 60.00754 * 1 2 3 27 27 H 1.08999 * 109.46903 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47211 * 299.99963 * 1 2 3 29 29 H 1.08993 * 109.47442 * 59.99619 * 3 2 1 30 30 H 1.09007 * 109.47178 * 299.99410 * 3 2 1 31 31 H 1.09001 * 109.47043 * 59.99203 * 4 3 2 32 32 H 1.09006 * 109.46981 * 299.99832 * 4 3 2 33 33 H 1.08998 * 109.47042 * 59.99834 * 7 5 4 34 34 H 1.09001 * 109.47276 * 180.02562 * 7 5 4 35 35 H 1.09008 * 109.47239 * 300.00084 * 7 5 4 36 36 H 1.09004 * 109.47199 * 54.99815 * 8 5 4 37 37 H 1.09004 * 109.47212 * 294.99931 * 8 5 4 38 38 H 1.09004 * 109.47053 * 59.99899 * 9 8 5 39 39 H 1.08994 * 109.47215 * 299.99610 * 9 8 5 40 40 H 1.08996 * 113.76772 * 90.35847 * 14 13 10 41 41 H 1.08991 * 113.86922 * 318.97249 * 14 13 10 42 42 H 0.96700 * 114.00311 * 181.92380 * 16 15 14 43 43 H 0.96996 * 120.00241 * 179.97438 * 20 19 17 44 44 H 1.08997 * 113.86757 * 41.07692 * 25 13 10 45 45 H 1.09004 * 113.76551 * 269.58583 * 25 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 6 4.1577 2.5825 -0.0013 6 1 3.7666 3.1539 -0.8432 7 6 3.8088 3.2967 1.3059 8 6 5.6779 2.4639 -0.1276 9 6 6.2896 3.8607 -0.2537 10 16 8.0920 3.7201 -0.4028 11 8 8.4450 3.1289 -1.6457 12 8 8.6586 3.2576 0.8156 13 7 8.6194 5.2847 -0.5296 14 6 9.0396 6.3163 0.4386 15 6 8.6377 7.3409 -0.6378 16 8 7.2790 7.7730 -0.5420 17 6 9.6091 8.4844 -0.7797 18 1 10.4727 8.5426 -0.1338 19 6 9.3952 9.4562 -1.7342 20 7 8.3434 9.3855 -2.5204 21 14 10.5996 10.8731 -1.9106 22 1 11.6600 10.5033 -2.8821 23 1 9.8796 12.0770 -2.3980 24 1 11.2167 11.1654 -0.5918 25 6 8.8580 6.2101 -1.6588 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8901 31 1 3.8567 0.6439 -0.8908 32 1 3.8575 0.6437 0.8892 33 1 4.1998 2.7253 2.1477 34 1 4.2517 4.2927 1.3052 35 1 2.7257 3.3812 1.3959 36 1 5.9243 1.8780 -1.0132 37 1 6.0787 1.9703 0.7577 38 1 6.0432 4.4465 0.6318 39 1 5.8889 4.3542 -1.1390 40 1 10.1074 6.3047 0.6571 41 1 8.4222 6.3566 1.3359 42 1 7.0141 8.3944 -1.2340 43 1 8.1927 10.0693 -3.1916 44 1 8.0946 6.1645 -2.4354 45 1 9.8727 6.1674 -2.0549 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349535168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:50 Heat of formation + Delta-G solvation = -173.604062 kcal Electronic energy + Delta-G solvation = -25713.801015 eV Core-core repulsion = 21858.508063 eV Total energy + Delta-G solvation = -3855.292952 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.13242 -39.28785 -38.15608 -37.73289 -37.03332 -35.67161 -34.06436 -32.88835 -29.55830 -29.48209 -27.33100 -26.93539 -26.53373 -26.03075 -23.25437 -21.29977 -20.97178 -19.77756 -19.25982 -18.28086 -17.63241 -17.40703 -17.17054 -17.05310 -16.92565 -16.22481 -15.98799 -15.83886 -15.42982 -14.99451 -14.86394 -14.61848 -14.34921 -14.14138 -13.85356 -13.64436 -13.37860 -13.29599 -13.20140 -13.15367 -12.98180 -12.83124 -12.75989 -12.50701 -12.39616 -12.23740 -12.22902 -12.12294 -12.04868 -11.66946 -11.58630 -11.39582 -11.04422 -10.59525 -10.58100 -10.23790 -9.74710 -8.21491 -6.36583 -0.75055 1.47277 1.50891 1.58969 1.64340 2.43110 2.74309 2.91097 2.97809 3.07887 3.52960 3.68009 3.70070 3.82351 3.98392 4.24273 4.28929 4.32075 4.35407 4.42941 4.51256 4.52989 4.56021 4.59956 4.65963 4.69139 4.73114 4.81680 4.84392 4.85835 4.97446 5.01635 5.08133 5.08816 5.09347 5.28171 5.37683 5.44524 5.75817 5.89262 6.03054 6.23611 6.68703 7.36006 7.52504 8.83663 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021336 B = 0.002703 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.001884 B =10355.324718 C =11095.456889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.058 3.942 4 C -0.116 4.116 5 C -0.074 4.074 6 H 0.084 0.916 7 C -0.160 4.160 8 C -0.115 4.115 9 C -0.599 4.599 10 S 2.623 3.377 11 O -0.997 6.997 12 O -0.992 6.992 13 N -1.042 6.042 14 C 0.138 3.862 15 C 0.223 3.777 16 O -0.577 6.577 17 C -0.556 4.556 18 H 0.069 0.931 19 C 0.031 3.969 20 N -0.916 5.916 21 Si 0.963 3.037 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.113 3.887 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.386 0.614 43 H 0.274 0.726 44 H 0.063 0.937 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.303 -11.337 4.364 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C -0.019 4.019 4 C -0.153 4.153 5 C -0.094 4.094 6 H 0.102 0.898 7 C -0.217 4.217 8 C -0.154 4.154 9 C -0.732 4.732 10 S 2.725 3.275 11 O -0.987 6.987 12 O -0.983 6.983 13 N -0.881 5.881 14 C 0.013 3.987 15 C 0.180 3.820 16 O -0.389 6.389 17 C -0.594 4.594 18 H 0.087 0.913 19 C -0.169 4.169 20 N -0.557 5.557 21 Si 0.789 3.211 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.195 1.195 25 C -0.013 4.013 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.240 0.760 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.758 -12.806 4.745 18.689 hybrid contribution -0.008 1.686 -0.880 1.902 sum -12.766 -11.120 3.864 17.365 Atomic orbital electron populations 1.22913 0.79637 1.03738 1.00807 1.87827 1.21398 1.29143 1.95623 1.22682 0.93805 0.84240 1.01125 1.21567 0.93457 0.96775 1.03523 1.20955 0.92470 0.96058 0.99920 0.89803 1.22049 1.02365 1.00685 0.96627 1.21544 0.97741 0.92027 1.04094 1.30432 1.22075 1.07178 1.13499 1.04297 0.79142 0.71340 0.72737 1.93502 1.83538 1.75896 1.45813 1.93501 1.77209 1.79645 1.47913 1.59925 1.80736 1.29422 1.18002 1.22943 0.99886 0.82719 0.93184 1.20207 0.81340 0.89818 0.90630 1.85976 1.28420 1.67120 1.57339 1.21864 1.09760 1.09077 1.18741 0.91255 1.25703 0.96979 0.99934 0.94288 1.69453 1.28584 1.36159 1.21469 0.85482 0.78800 0.78481 0.78373 1.20353 1.20854 1.19468 1.23584 0.99798 0.87331 0.90603 0.93332 0.88660 0.93176 0.92011 0.92679 0.91118 0.90897 0.92003 0.92350 0.91137 0.89847 0.89735 0.83358 0.83717 0.89127 0.89925 0.76012 0.91656 0.91865 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -8.01 10.70 -148.98 -1.59 -9.61 16 3 C 0.06 0.92 5.69 71.98 0.41 1.33 16 4 C -0.12 -1.94 5.05 30.59 0.15 -1.79 16 5 C -0.07 -1.29 2.39 -10.80 -0.03 -1.32 16 6 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 7 C -0.16 -2.63 8.70 71.98 0.63 -2.00 16 8 C -0.11 -2.43 4.69 30.60 0.14 -2.28 16 9 C -0.60 -14.91 5.93 71.98 0.43 -14.49 16 10 S 2.62 90.52 5.93 -56.49 -0.34 90.18 16 11 O -1.00 -40.11 18.03 -127.65 -2.30 -42.41 16 12 O -0.99 -38.38 18.02 -127.65 -2.30 -40.68 16 13 N -1.04 -40.53 4.00 -532.44 -2.13 -42.67 16 14 C 0.14 5.48 8.30 86.49 0.72 6.20 16 15 C 0.22 10.17 1.40 -10.88 -0.02 10.16 16 16 O -0.58 -26.96 13.48 -148.98 -2.01 -28.97 16 17 C -0.56 -27.28 8.61 25.60 0.22 -27.06 16 18 H 0.07 3.33 7.81 -2.91 -0.02 3.31 16 19 C 0.03 1.53 5.39 84.66 0.46 1.99 16 20 N -0.92 -45.47 11.20 21.45 0.24 -45.23 16 21 Si 0.96 39.40 29.54 68.60 2.03 41.43 16 22 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 C 0.11 4.90 8.33 86.41 0.72 5.62 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 27 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.85 6.57 -2.39 -0.02 0.84 16 30 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.03 6.57 -2.39 -0.02 1.02 16 35 H 0.07 0.96 6.57 -2.38 -0.02 0.95 16 36 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.15 3.38 6.57 -2.39 -0.02 3.37 16 39 H 0.14 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.09 3.44 8.09 -2.39 -0.02 3.42 16 41 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 42 H 0.39 18.77 6.60 -74.06 -0.49 18.28 16 43 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 44 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.07 3.16 8.09 -2.39 -0.02 3.14 16 Total: -1.00 -62.39 378.75 -2.84 -65.22 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: 0.49 Total: 34.80 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 5.08 Total: -22.08 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -1.89 Total: -87.90 kcal Atomic # 8 Polarization: -113.45 SS G_CDS: -8.21 Total: -121.66 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Atomic # 16 Polarization: 90.52 SS G_CDS: -0.34 Total: 90.18 kcal Total: -62.39 -2.84 -65.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349535168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.382 kcal (2) G-P(sol) polarization free energy of solvation -62.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds