Wall clock time and date at job start Fri Apr 10 2020 14:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00242 * 2 1 4 4 C 1.52995 * 109.47440 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47027 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47136 * 54.99843 * 5 4 3 7 7 C 1.53004 * 109.46868 * 294.99898 * 5 4 3 8 8 C 1.52993 * 109.46868 * 175.00301 * 5 4 3 9 9 C 1.53002 * 109.47188 * 184.99749 * 8 5 4 10 10 S 1.81403 * 109.47546 * 179.97438 * 9 8 5 11 11 O 1.42098 * 110.53869 * 68.37902 * 10 9 8 12 12 O 1.42096 * 110.54241 * 291.63087 * 10 9 8 13 13 N 1.65599 * 104.44816 * 180.02562 * 10 9 8 14 14 C 1.47066 * 136.05603 * 90.00708 * 13 10 9 15 15 C 1.53504 * 88.04678 * 207.05069 * 14 13 10 16 16 O 1.42902 * 114.20451 * 87.54970 * 15 14 13 17 17 C 1.50703 * 114.20523 * 220.37340 * 15 14 13 18 18 H 1.08004 * 119.99655 * 0.02562 * 17 15 14 19 19 C 1.37874 * 119.99845 * 180.02562 * 17 15 14 20 20 N 1.31512 * 120.00020 * 180.02562 * 19 17 15 21 21 Si 1.86802 * 119.99918 * 359.97438 * 19 17 15 22 22 H 1.48502 * 109.46643 * 90.00735 * 21 19 17 23 23 H 1.48498 * 109.47339 * 210.00219 * 21 19 17 24 24 H 1.48496 * 109.47360 * 330.00819 * 21 19 17 25 25 C 1.47064 * 136.05736 * 269.94606 * 13 10 9 26 26 H 1.08991 * 109.47510 * 59.99771 * 1 2 3 27 27 H 1.09001 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46888 * 299.99450 * 1 2 3 29 29 H 1.08998 * 109.46665 * 59.99733 * 3 2 1 30 30 H 1.09002 * 109.46657 * 300.00685 * 3 2 1 31 31 H 1.09001 * 109.47123 * 60.00255 * 4 3 2 32 32 H 1.08994 * 109.47312 * 300.00103 * 4 3 2 33 33 H 1.08993 * 109.47197 * 299.99907 * 7 5 4 34 34 H 1.09003 * 109.47010 * 60.00493 * 7 5 4 35 35 H 1.08999 * 109.46540 * 180.02562 * 7 5 4 36 36 H 1.08995 * 109.47737 * 64.99953 * 8 5 4 37 37 H 1.09000 * 109.47653 * 304.99609 * 8 5 4 38 38 H 1.09011 * 109.46857 * 59.99791 * 9 8 5 39 39 H 1.08998 * 109.47441 * 300.00464 * 9 8 5 40 40 H 1.09002 * 113.46793 * 321.86041 * 14 13 10 41 41 H 1.08999 * 113.46805 * 92.24408 * 14 13 10 42 42 H 0.96697 * 113.99512 * 180.02562 * 16 15 14 43 43 H 0.96996 * 120.00113 * 179.97438 * 20 19 17 44 44 H 1.08999 * 113.47096 * 267.69903 * 25 13 10 45 45 H 1.09005 * 113.46966 * 38.08296 * 25 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5825 0.0000 6 1 3.7673 3.1536 0.8422 7 6 3.8077 3.2971 -1.3068 8 6 5.6779 2.4638 0.1250 9 6 6.2899 3.8604 0.2510 10 16 8.0923 3.7198 0.4000 11 8 8.6586 3.2572 -0.8184 12 8 8.4452 3.1285 1.6429 13 7 8.6196 5.2843 0.5281 14 6 8.8688 6.2313 1.6254 15 6 8.5880 7.3706 0.6358 16 8 7.2093 7.7327 0.5351 17 6 9.5092 8.5547 0.7793 18 1 10.2842 8.5479 1.5316 19 6 9.3627 9.6465 -0.0498 20 7 10.1669 10.6796 0.0750 21 14 8.0228 9.6578 -1.3514 22 1 6.7817 10.2385 -0.7789 23 1 8.4641 10.4764 -2.5091 24 1 7.7573 8.2675 -1.8006 25 6 9.0458 6.3379 -0.4052 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6886 1.8463 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8567 0.6440 -0.8909 32 1 3.8574 0.6436 0.8890 33 1 4.1981 2.7260 -2.1491 34 1 2.7246 3.3816 -1.3959 35 1 4.2514 4.2927 -1.3065 36 1 6.0780 1.9705 -0.7608 37 1 5.9251 1.8777 1.0101 38 1 5.8898 4.3538 1.1369 39 1 6.0427 4.4466 -0.6341 40 1 8.1369 6.1652 2.4304 41 1 9.8966 6.2147 1.9881 42 1 7.0359 8.4504 -0.0893 43 1 10.0641 11.4475 -0.5085 44 1 10.1209 6.3506 -0.5841 45 1 8.4650 6.3620 -1.3273 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349535169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:55 Heat of formation + Delta-G solvation = -129.831800 kcal Electronic energy + Delta-G solvation = -25857.617528 eV Core-core repulsion = 22004.222684 eV Total energy + Delta-G solvation = -3853.394844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.06777 -38.64621 -37.02164 -36.79901 -35.67767 -34.61059 -32.55137 -32.07689 -28.85980 -28.24287 -26.76409 -25.51585 -25.41098 -24.67234 -22.49013 -20.34257 -19.92204 -18.50179 -17.66396 -16.99913 -16.73451 -16.47730 -16.42381 -16.14005 -16.01196 -15.48002 -15.08368 -14.29460 -14.09253 -14.01420 -13.73012 -13.52414 -13.34854 -13.12957 -12.93129 -12.62209 -12.31168 -12.23956 -12.18872 -11.91900 -11.87414 -11.77780 -11.72406 -11.52370 -11.29781 -11.02532 -11.00205 -10.95791 -10.88935 -10.54790 -10.41372 -10.11462 -9.99290 -9.33248 -9.12138 -8.74877 -8.36813 -6.42807 -4.47762 0.47260 2.93151 2.96130 3.00804 3.13689 3.36288 4.01399 4.06399 4.25854 4.42473 4.49113 4.52884 4.63936 4.76232 4.87692 4.92387 4.96886 5.00598 5.06438 5.08359 5.18869 5.27484 5.36967 5.39122 5.52625 5.57288 5.66101 5.71919 5.72496 5.79645 5.81455 6.04674 6.07125 6.09030 6.21545 6.31749 6.46643 6.62483 6.79255 7.05007 7.33380 7.99526 8.48230 8.61928 9.14901 10.69540 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.003049 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.627683 B = 9179.975547 C =10163.628579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.059 3.941 4 C -0.118 4.118 5 C -0.080 4.080 6 H 0.078 0.922 7 C -0.157 4.157 8 C -0.106 4.106 9 C -0.629 4.629 10 S 2.632 3.368 11 O -0.962 6.962 12 O -0.962 6.962 13 N -1.045 6.045 14 C 0.150 3.850 15 C 0.192 3.808 16 O -0.554 6.554 17 C -0.532 4.532 18 H 0.093 0.907 19 C 0.078 3.922 20 N -0.876 5.876 21 Si 0.859 3.141 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.257 1.257 25 C 0.096 3.904 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.351 0.649 43 H 0.271 0.729 44 H 0.092 0.908 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.688 -14.435 -1.776 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.017 4.017 4 C -0.155 4.155 5 C -0.100 4.100 6 H 0.097 0.903 7 C -0.215 4.215 8 C -0.145 4.145 9 C -0.758 4.758 10 S 2.729 3.271 11 O -0.953 6.953 12 O -0.953 6.953 13 N -0.885 5.885 14 C 0.025 3.975 15 C 0.149 3.851 16 O -0.365 6.365 17 C -0.570 4.570 18 H 0.111 0.889 19 C -0.127 4.127 20 N -0.512 5.512 21 Si 0.687 3.313 22 H -0.194 1.194 23 H -0.211 1.211 24 H -0.182 1.182 25 C -0.030 4.030 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.204 0.796 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.094 -15.893 -1.426 21.964 hybrid contribution -1.477 1.253 -1.244 2.302 sum -16.571 -14.640 -2.670 22.272 Atomic orbital electron populations 1.22733 0.81069 1.02724 0.99977 1.87868 1.19690 1.28333 1.95439 1.22643 0.94236 0.84481 1.00380 1.21608 0.92969 0.97187 1.03754 1.21004 0.94003 0.95617 0.99335 0.90346 1.22014 1.01427 1.01095 0.96922 1.21358 0.96438 0.93218 1.03482 1.30719 1.27344 1.05528 1.12218 1.04152 0.77287 0.71743 0.73956 1.93555 1.75328 1.79022 1.47379 1.93553 1.81916 1.75149 1.44689 1.59732 1.79668 1.29408 1.19662 1.22630 1.00983 0.83936 0.89952 1.20494 0.80168 0.92346 0.92063 1.86401 1.27183 1.56556 1.66403 1.21216 1.16576 0.98930 1.20296 0.88925 1.25019 0.95728 0.95279 0.96664 1.69849 1.36929 1.06115 1.38285 0.87335 0.82483 0.79069 0.82364 1.19383 1.21057 1.18190 1.23882 1.00500 0.84400 0.94211 0.94110 0.89651 0.94085 0.93265 0.92955 0.90746 0.90743 0.92204 0.92440 0.91848 0.90304 0.90230 0.84743 0.84833 0.91294 0.88808 0.79590 0.91904 0.88956 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.89 10.70 -35.23 -0.38 -4.27 16 3 C 0.06 0.50 5.69 37.16 0.21 0.71 16 4 C -0.12 -1.03 5.05 -26.73 -0.14 -1.16 16 5 C -0.08 -0.73 2.39 -90.62 -0.22 -0.95 16 6 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 7 C -0.16 -1.40 8.70 37.16 0.32 -1.07 16 8 C -0.11 -1.13 4.69 -26.73 -0.13 -1.26 16 9 C -0.63 -7.80 5.93 37.16 0.22 -7.58 16 10 S 2.63 43.48 5.96 -107.50 -0.64 42.84 16 11 O -0.96 -18.27 18.07 -57.54 -1.04 -19.31 16 12 O -0.96 -17.98 18.07 -57.54 -1.04 -19.02 16 13 N -1.05 -19.33 4.10 -124.97 -0.51 -19.84 16 14 C 0.15 2.88 8.10 -8.50 -0.07 2.81 16 15 C 0.19 4.17 1.10 -91.19 -0.10 4.07 16 16 O -0.55 -11.93 13.32 -35.23 -0.47 -12.40 16 17 C -0.53 -13.37 9.27 -34.44 -0.32 -13.69 16 18 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 19 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 20 N -0.88 -24.19 13.96 55.43 0.77 -23.42 16 21 Si 0.86 18.50 24.42 -169.99 -4.15 14.35 16 22 H -0.27 -5.54 7.06 56.52 0.40 -5.15 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.26 -5.15 5.49 56.52 0.31 -4.84 16 25 C 0.10 1.92 7.54 -8.44 -0.06 1.86 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.40 6.57 -51.93 -0.34 0.06 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 35 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.13 1.53 8.14 -51.92 -0.42 1.11 16 39 H 0.13 1.57 6.56 -51.93 -0.34 1.23 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 42 H 0.35 7.39 3.16 45.56 0.14 7.53 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.09 1.82 8.10 -51.93 -0.42 1.40 16 45 H 0.06 1.15 7.15 -51.93 -0.37 0.78 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -31.54 370.06 -8.30 -39.83 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.16 Total: 8.68 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 0.74 Total: -13.02 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.26 Total: -43.26 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -2.93 Total: -55.00 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -4.15 Total: 14.35 kcal Atomic # 16 Polarization: 43.48 SS G_CDS: -0.64 Total: 42.84 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.54 -8.30 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349535169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.997 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds