Wall clock time and date at job start Fri Apr 10 2020 14:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00242 * 2 1 4 4 C 1.52995 * 109.47440 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47027 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47136 * 54.99843 * 5 4 3 7 7 C 1.53004 * 109.46868 * 294.99898 * 5 4 3 8 8 C 1.52993 * 109.46868 * 175.00301 * 5 4 3 9 9 C 1.53002 * 109.47188 * 184.99749 * 8 5 4 10 10 S 1.81403 * 109.47546 * 179.97438 * 9 8 5 11 11 O 1.42098 * 110.53869 * 68.37902 * 10 9 8 12 12 O 1.42096 * 110.54241 * 291.63087 * 10 9 8 13 13 N 1.65599 * 104.44816 * 180.02562 * 10 9 8 14 14 C 1.47066 * 136.05603 * 90.00708 * 13 10 9 15 15 C 1.53504 * 88.04678 * 207.05069 * 14 13 10 16 16 O 1.42902 * 114.20451 * 87.54970 * 15 14 13 17 17 C 1.50703 * 114.20523 * 220.37340 * 15 14 13 18 18 H 1.08004 * 119.99655 * 0.02562 * 17 15 14 19 19 C 1.37874 * 119.99845 * 180.02562 * 17 15 14 20 20 N 1.31512 * 120.00020 * 180.02562 * 19 17 15 21 21 Si 1.86802 * 119.99918 * 359.97438 * 19 17 15 22 22 H 1.48502 * 109.46643 * 90.00735 * 21 19 17 23 23 H 1.48498 * 109.47339 * 210.00219 * 21 19 17 24 24 H 1.48496 * 109.47360 * 330.00819 * 21 19 17 25 25 C 1.47064 * 136.05736 * 269.94606 * 13 10 9 26 26 H 1.08991 * 109.47510 * 59.99771 * 1 2 3 27 27 H 1.09001 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46888 * 299.99450 * 1 2 3 29 29 H 1.08998 * 109.46665 * 59.99733 * 3 2 1 30 30 H 1.09002 * 109.46657 * 300.00685 * 3 2 1 31 31 H 1.09001 * 109.47123 * 60.00255 * 4 3 2 32 32 H 1.08994 * 109.47312 * 300.00103 * 4 3 2 33 33 H 1.08993 * 109.47197 * 299.99907 * 7 5 4 34 34 H 1.09003 * 109.47010 * 60.00493 * 7 5 4 35 35 H 1.08999 * 109.46540 * 180.02562 * 7 5 4 36 36 H 1.08995 * 109.47737 * 64.99953 * 8 5 4 37 37 H 1.09000 * 109.47653 * 304.99609 * 8 5 4 38 38 H 1.09011 * 109.46857 * 59.99791 * 9 8 5 39 39 H 1.08998 * 109.47441 * 300.00464 * 9 8 5 40 40 H 1.09002 * 113.46793 * 321.86041 * 14 13 10 41 41 H 1.08999 * 113.46805 * 92.24408 * 14 13 10 42 42 H 0.96697 * 113.99512 * 180.02562 * 16 15 14 43 43 H 0.96996 * 120.00113 * 179.97438 * 20 19 17 44 44 H 1.08999 * 113.47096 * 267.69903 * 25 13 10 45 45 H 1.09005 * 113.46966 * 38.08296 * 25 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5825 0.0000 6 1 3.7673 3.1536 0.8422 7 6 3.8077 3.2971 -1.3068 8 6 5.6779 2.4638 0.1250 9 6 6.2899 3.8604 0.2510 10 16 8.0923 3.7198 0.4000 11 8 8.6586 3.2572 -0.8184 12 8 8.4452 3.1285 1.6429 13 7 8.6196 5.2843 0.5281 14 6 8.8688 6.2313 1.6254 15 6 8.5880 7.3706 0.6358 16 8 7.2093 7.7327 0.5351 17 6 9.5092 8.5547 0.7793 18 1 10.2842 8.5479 1.5316 19 6 9.3627 9.6465 -0.0498 20 7 10.1669 10.6796 0.0750 21 14 8.0228 9.6578 -1.3514 22 1 6.7817 10.2385 -0.7789 23 1 8.4641 10.4764 -2.5091 24 1 7.7573 8.2675 -1.8006 25 6 9.0458 6.3379 -0.4052 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6886 1.8463 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8567 0.6440 -0.8909 32 1 3.8574 0.6436 0.8890 33 1 4.1981 2.7260 -2.1491 34 1 2.7246 3.3816 -1.3959 35 1 4.2514 4.2927 -1.3065 36 1 6.0780 1.9705 -0.7608 37 1 5.9251 1.8777 1.0101 38 1 5.8898 4.3538 1.1369 39 1 6.0427 4.4466 -0.6341 40 1 8.1369 6.1652 2.4304 41 1 9.8966 6.2147 1.9881 42 1 7.0359 8.4504 -0.0893 43 1 10.0641 11.4475 -0.5085 44 1 10.1209 6.3506 -0.5841 45 1 8.4650 6.3620 -1.3273 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349535169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:55 Heat of formation + Delta-G solvation = -155.413098 kcal Electronic energy + Delta-G solvation = -25858.726816 eV Core-core repulsion = 22004.222684 eV Total energy + Delta-G solvation = -3854.504133 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.68035 -39.29060 -38.19719 -37.73774 -37.07189 -36.26540 -34.49610 -32.89657 -29.94966 -29.52494 -27.33982 -27.00309 -26.60266 -26.06040 -23.27104 -21.61869 -20.99405 -19.94599 -19.35829 -18.42978 -18.14039 -17.65369 -17.30602 -17.18464 -17.03050 -16.25443 -15.89354 -15.75986 -15.67787 -15.24001 -14.95901 -14.75225 -14.48846 -14.30139 -14.14973 -13.92924 -13.65568 -13.49361 -13.30739 -13.18657 -12.99212 -12.76467 -12.65183 -12.61987 -12.41404 -12.30149 -12.23440 -12.06593 -11.88853 -11.68138 -11.58533 -11.43321 -11.04987 -10.93187 -10.58640 -10.45368 -9.92309 -8.38983 -6.49691 -0.81042 1.24750 1.31838 1.42737 1.58157 2.20674 2.73151 2.80075 2.89324 2.99020 3.26578 3.54028 3.68810 3.81187 3.95498 4.00744 4.18973 4.24413 4.28774 4.33788 4.49726 4.51492 4.52488 4.55864 4.59746 4.66084 4.70329 4.75877 4.79229 4.83951 4.85475 4.95025 5.01600 5.02021 5.08331 5.09052 5.27479 5.37404 5.44173 5.70173 6.07023 6.23514 6.58211 6.74146 7.17477 8.76666 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.003049 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.627683 B = 9179.975547 C =10163.628579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.057 3.943 4 C -0.116 4.116 5 C -0.074 4.074 6 H 0.087 0.913 7 C -0.162 4.162 8 C -0.116 4.116 9 C -0.600 4.600 10 S 2.630 3.370 11 O -0.991 6.991 12 O -0.989 6.989 13 N -1.047 6.047 14 C 0.149 3.851 15 C 0.184 3.816 16 O -0.549 6.549 17 C -0.539 4.539 18 H 0.056 0.944 19 C 0.022 3.978 20 N -0.927 5.927 21 Si 0.917 3.083 22 H -0.249 1.249 23 H -0.288 1.288 24 H -0.230 1.230 25 C 0.096 3.904 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.354 0.646 43 H 0.272 0.728 44 H 0.086 0.914 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.782 -15.542 -2.622 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C -0.019 4.019 4 C -0.154 4.154 5 C -0.093 4.093 6 H 0.105 0.895 7 C -0.219 4.219 8 C -0.155 4.155 9 C -0.733 4.733 10 S 2.732 3.268 11 O -0.982 6.982 12 O -0.980 6.980 13 N -0.884 5.884 14 C 0.023 3.977 15 C 0.141 3.859 16 O -0.361 6.361 17 C -0.578 4.578 18 H 0.075 0.925 19 C -0.179 4.179 20 N -0.565 5.565 21 Si 0.742 3.258 22 H -0.175 1.175 23 H -0.215 1.215 24 H -0.154 1.154 25 C -0.030 4.030 26 H 0.068 0.932 27 H 0.113 0.887 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.171 0.829 39 H 0.167 0.833 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.207 0.793 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.143 -17.017 -2.252 24.977 hybrid contribution -0.530 1.525 -0.906 1.851 sum -18.673 -15.492 -3.158 24.468 Atomic orbital electron populations 1.22906 0.79659 1.03714 1.00802 1.87827 1.21371 1.29208 1.95621 1.22691 0.93852 0.84221 1.01123 1.21574 0.93414 0.96898 1.03502 1.20956 0.92472 0.95979 0.99935 0.89462 1.22063 1.02361 1.00750 0.96689 1.21544 0.97679 0.92075 1.04193 1.30465 1.21616 1.07316 1.13939 1.04189 0.79165 0.70655 0.72805 1.93515 1.77407 1.79194 1.48097 1.93517 1.83574 1.75325 1.45572 1.59704 1.80678 1.29431 1.18619 1.22580 1.01593 0.83142 0.90337 1.20434 0.79662 0.91561 0.94229 1.86391 1.26407 1.56623 1.66688 1.21395 1.16450 1.00657 1.19292 0.92535 1.25884 0.98236 0.94674 0.99079 1.70006 1.39396 1.07144 1.39928 0.86357 0.79818 0.80475 0.79148 1.17451 1.21510 1.15395 1.23684 1.00515 0.84345 0.94490 0.93220 0.88724 0.93285 0.92557 0.92121 0.91071 0.91023 0.92204 0.91189 0.92169 0.89923 0.89578 0.82868 0.83312 0.89434 0.89049 0.79309 0.91881 0.89630 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.50 10.70 -148.98 -1.59 -9.10 16 3 C 0.06 0.82 5.69 71.98 0.41 1.23 16 4 C -0.12 -1.74 5.05 30.59 0.15 -1.59 16 5 C -0.07 -1.09 2.39 -10.79 -0.03 -1.12 16 6 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 7 C -0.16 -2.30 8.70 71.98 0.63 -1.67 16 8 C -0.12 -2.12 4.69 30.59 0.14 -1.97 16 9 C -0.60 -12.77 5.93 71.98 0.43 -12.34 16 10 S 2.63 82.29 5.96 -56.49 -0.34 81.95 16 11 O -0.99 -36.43 18.07 -127.65 -2.31 -38.74 16 12 O -0.99 -35.81 18.07 -127.65 -2.31 -38.12 16 13 N -1.05 -37.03 4.10 -549.71 -2.25 -39.28 16 14 C 0.15 5.57 8.10 83.18 0.67 6.24 16 15 C 0.18 7.77 1.10 -11.16 -0.01 7.76 16 16 O -0.55 -22.08 13.32 -148.98 -1.99 -24.07 16 17 C -0.54 -27.62 9.27 25.60 0.24 -27.38 16 18 H 0.06 3.20 8.06 -2.91 -0.02 3.18 16 19 C 0.02 1.14 5.47 84.65 0.46 1.60 16 20 N -0.93 -52.68 13.96 21.45 0.30 -52.38 16 21 Si 0.92 37.06 24.42 68.60 1.68 38.73 16 22 H -0.25 -9.33 7.06 99.48 0.70 -8.62 16 23 H -0.29 -11.82 7.11 99.48 0.71 -11.12 16 24 H -0.23 -8.23 5.49 99.48 0.55 -7.69 16 25 C 0.10 3.70 7.54 83.22 0.63 4.33 16 26 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.75 6.57 -2.39 -0.02 0.74 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.82 6.57 -2.39 -0.02 0.81 16 35 H 0.06 0.90 6.56 -2.39 -0.02 0.89 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.15 2.82 8.14 -2.38 -0.02 2.80 16 39 H 0.15 2.86 6.56 -2.39 -0.02 2.84 16 40 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.09 3.40 8.10 -2.39 -0.02 3.38 16 42 H 0.35 13.68 3.16 -74.06 -0.23 13.44 16 43 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 44 H 0.09 3.37 8.10 -2.39 -0.02 3.35 16 45 H 0.08 2.67 7.15 -2.38 -0.02 2.65 16 Total: -1.00 -68.46 370.06 -3.26 -71.72 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.58 Total: 32.66 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 4.97 Total: -23.38 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -1.96 Total: -91.66 kcal Atomic # 8 Polarization: -101.83 SS G_CDS: -8.19 Total: -110.02 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 1.68 Total: 38.73 kcal Atomic # 16 Polarization: 82.29 SS G_CDS: -0.34 Total: 81.95 kcal Total: -68.46 -3.26 -71.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349535169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.692 kcal (2) G-P(sol) polarization free energy of solvation -68.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds