Wall clock time and date at job start Fri Apr 10 2020 14:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.71012 * 2 1 4 4 C 1.52873 * 109.61966 * 239.69419 * 2 1 3 5 5 O 1.42962 * 109.29781 * 188.11236 * 4 2 1 6 6 C 1.42971 * 114.16464 * 62.45521 * 5 4 2 7 7 H 1.08997 * 109.55239 * 57.36500 * 6 5 4 8 8 C 1.52992 * 109.50987 * 177.49593 * 6 5 4 9 9 O 1.42901 * 109.47143 * 294.74369 * 8 6 5 10 10 C 1.53292 * 109.21607 * 297.41624 * 6 5 4 11 11 N 1.47148 * 108.38714 * 52.30498 * 10 6 5 12 12 S 1.65602 * 120.98255 * 129.43823 * 11 10 6 13 13 O 1.42105 * 104.27685 * 347.08139 * 12 11 10 14 14 O 1.42104 * 104.27767 * 219.22385 * 12 11 10 15 15 C 1.81399 * 104.44962 * 103.15139 * 12 11 10 16 16 C 1.53003 * 109.47265 * 180.02562 * 15 12 11 17 17 C 1.52998 * 109.47249 * 59.99923 * 16 15 12 18 18 C 1.53008 * 109.47020 * 300.00057 * 16 15 12 19 19 C 1.50700 * 109.47434 * 180.02562 * 16 15 12 20 20 H 1.08006 * 119.99390 * 354.89163 * 19 16 15 21 21 C 1.37874 * 120.00441 * 174.89255 * 19 16 15 22 22 N 1.31503 * 120.00509 * 211.47191 * 21 19 16 23 23 Si 1.86806 * 119.99671 * 31.46961 * 21 19 16 24 24 H 1.48498 * 109.47034 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.47235 * 299.99849 * 23 21 19 26 26 H 1.48500 * 109.47203 * 60.00316 * 23 21 19 27 27 H 1.08996 * 109.47040 * 291.81981 * 1 2 3 28 28 H 1.08996 * 109.46526 * 51.82783 * 1 2 3 29 29 H 1.08998 * 109.46616 * 171.82254 * 1 2 3 30 30 H 1.09002 * 109.57978 * 68.10733 * 4 2 1 31 31 H 1.09003 * 109.37097 * 307.99813 * 4 2 1 32 32 H 1.09001 * 109.47905 * 54.74412 * 8 6 5 33 33 H 1.09000 * 109.47169 * 174.74500 * 8 6 5 34 34 H 0.96702 * 114.00224 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.68835 * 292.57301 * 10 6 5 36 36 H 1.09003 * 109.70934 * 172.04773 * 10 6 5 37 37 H 1.09003 * 109.47400 * 60.00075 * 15 12 11 38 38 H 1.08996 * 109.47606 * 300.00180 * 15 12 11 39 39 H 1.08997 * 109.46908 * 176.15444 * 17 16 15 40 40 H 1.09005 * 109.47112 * 296.15870 * 17 16 15 41 41 H 1.08995 * 109.46817 * 56.15427 * 17 16 15 42 42 H 1.09001 * 109.46877 * 307.57187 * 18 16 15 43 43 H 1.09000 * 109.46877 * 67.57178 * 18 16 15 44 44 H 1.08997 * 109.46944 * 187.57322 * 18 16 15 45 45 H 0.97004 * 119.99866 * 354.97356 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0434 -0.7266 -1.2432 5 8 3.4602 -0.8893 -1.1441 6 6 3.8813 -1.6922 -0.0387 7 1 3.4137 -2.6748 -0.1025 8 6 5.4030 -1.8473 -0.0701 9 8 5.7827 -2.5860 -1.2329 10 6 3.4630 -1.0100 1.2688 11 7 2.0257 -0.7040 1.1934 12 16 0.9951 -1.1448 2.4124 13 8 1.7547 -2.0480 3.2040 14 8 -0.1815 -1.5715 1.7395 15 6 0.6857 0.3938 3.3222 16 6 -0.2644 0.1144 4.4885 17 6 0.3690 -0.9145 5.4271 18 6 -1.5870 -0.4338 3.9488 19 6 -0.5220 1.3927 5.2439 20 1 0.0083 2.2946 4.9757 21 6 -1.4345 1.4109 6.2773 22 7 -2.1222 2.5034 6.5282 23 14 -1.6939 -0.1164 7.3212 24 1 -2.7199 0.1613 8.3583 25 1 -2.1522 -1.2342 6.4576 26 1 -0.4156 -0.4902 7.9779 27 1 -0.3633 0.3820 0.9540 28 1 -0.3632 0.6351 -0.8079 29 1 -0.3632 -1.0172 -0.1462 30 1 1.8053 -0.1424 -2.1321 31 1 1.5684 -1.7054 -1.3118 32 1 5.8683 -0.8620 -0.0977 33 1 5.7325 -2.3797 0.8222 34 1 6.7361 -2.7231 -1.3179 35 1 4.0285 -0.0873 1.3988 36 1 3.6525 -1.6780 2.1090 37 1 0.2348 1.1270 2.6534 38 1 1.6278 0.7841 3.7070 39 1 -0.2767 -1.0626 6.2926 40 1 0.4922 -1.8603 4.8995 41 1 1.3428 -0.5534 5.7578 42 1 -1.9715 0.2365 3.1800 43 1 -1.4226 -1.4223 3.5199 44 1 -2.3092 -0.5061 4.7620 45 1 -1.9363 3.3176 6.0347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451319935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:44 Heat of formation + Delta-G solvation = -140.419552 kcal Electronic energy + Delta-G solvation = -27773.382251 eV Core-core repulsion = 23919.528287 eV Total energy + Delta-G solvation = -3853.853964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 6.34 seconds Orbital eigenvalues (eV) -39.79705 -37.26539 -36.80560 -36.68616 -35.63771 -35.10502 -32.99199 -32.05295 -29.44918 -27.58767 -26.39191 -26.22837 -25.05517 -24.56678 -22.46739 -21.20136 -19.68393 -18.56223 -17.75664 -17.32502 -17.04266 -16.88216 -16.22930 -15.89981 -15.23055 -15.12985 -15.04412 -14.73724 -14.48219 -14.00194 -13.47960 -13.25418 -13.23013 -12.97272 -12.76369 -12.64810 -12.44723 -12.12746 -11.96091 -11.90950 -11.56585 -11.39967 -11.36223 -11.20754 -11.03579 -10.89171 -10.67898 -10.54158 -10.30366 -10.24458 -10.10485 -10.00710 -9.90083 -9.15660 -9.04892 -8.82166 -8.08940 -6.64846 -4.17210 0.57725 2.77321 3.31579 3.37081 3.47114 3.57971 3.81520 4.13365 4.37398 4.42971 4.47146 4.58636 4.79948 4.86020 4.98531 5.00027 5.02572 5.12239 5.21414 5.27430 5.36830 5.37938 5.46322 5.48598 5.62205 5.71722 5.84971 5.95652 5.99704 6.19536 6.27901 6.38649 6.45423 6.45857 6.48693 6.69805 6.84861 6.96431 7.13387 7.31501 7.33638 7.99409 8.24054 8.77299 9.45539 10.73865 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025902 B = 0.004003 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.757089 B = 6992.652885 C = 7391.074525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.117 3.883 3 H 0.082 0.918 4 C 0.056 3.944 5 O -0.368 6.368 6 C 0.080 3.920 7 H 0.071 0.929 8 C 0.085 3.915 9 O -0.566 6.566 10 C 0.089 3.911 11 N -1.006 6.006 12 S 2.588 3.412 13 O -0.965 6.965 14 O -0.955 6.955 15 C -0.571 4.571 16 C 0.063 3.937 17 C -0.179 4.179 18 C -0.167 4.167 19 C -0.609 4.609 20 H 0.061 0.939 21 C 0.044 3.956 22 N -0.881 5.881 23 Si 1.045 2.955 24 H -0.295 1.295 25 H -0.275 1.275 26 H -0.283 1.283 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.380 0.620 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.037 0.963 44 H 0.065 0.935 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.611 -6.151 -13.960 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.011 3.989 3 H 0.100 0.900 4 C -0.022 4.022 5 O -0.287 6.287 6 C 0.021 3.979 7 H 0.089 0.911 8 C 0.006 3.994 9 O -0.371 6.371 10 C -0.037 4.037 11 N -0.843 5.843 12 S 2.688 3.312 13 O -0.955 6.955 14 O -0.945 6.945 15 C -0.704 4.704 16 C 0.059 3.941 17 C -0.236 4.236 18 C -0.224 4.224 19 C -0.647 4.647 20 H 0.079 0.921 21 C -0.164 4.164 22 N -0.512 5.512 23 Si 0.878 3.122 24 H -0.223 1.223 25 H -0.203 1.203 26 H -0.211 1.211 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.226 0.774 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.861 -7.549 -12.830 18.427 hybrid contribution 1.555 1.419 -0.783 2.246 sum 12.417 -6.130 -13.613 19.418 Atomic orbital electron populations 1.22634 0.91985 1.05894 1.03514 1.21627 0.95469 0.96417 0.85421 0.90015 1.22936 0.81449 1.00444 0.97359 1.87971 1.21862 1.71300 1.47529 1.22397 0.94213 0.94667 0.86650 0.91129 1.22105 0.93035 0.95907 0.88304 1.86534 1.28594 1.76875 1.45082 1.21980 0.81271 1.01570 0.98852 1.58124 1.18406 1.74350 1.33443 1.05914 0.73553 0.78211 0.73475 1.93505 1.70970 1.61509 1.69548 1.93612 1.47960 1.81103 1.71806 1.30462 1.09744 1.18635 1.11588 1.18170 0.89355 0.96954 0.89596 1.22779 1.01426 0.98315 1.01066 1.22574 0.99686 0.98661 1.01510 1.21516 1.29589 0.93843 1.19709 0.92132 1.25702 0.91272 1.03129 0.96328 1.70895 1.31516 1.03270 1.45519 0.84179 0.75867 0.75526 0.76644 1.22280 1.20263 1.21105 0.91406 0.90929 0.88151 0.87656 0.92330 0.92386 0.91582 0.77358 0.90504 0.87198 0.85874 0.86089 0.93025 0.93724 0.92074 0.92603 0.94416 0.91622 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 7.61 37.16 0.28 -2.03 16 2 C 0.12 1.42 3.69 -67.64 -0.25 1.17 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C 0.06 0.64 6.27 37.09 0.23 0.87 16 5 O -0.37 -4.69 10.35 -39.71 -0.41 -5.10 16 6 C 0.08 0.94 3.06 -26.58 -0.08 0.86 16 7 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 8 C 0.09 0.76 6.71 37.15 0.25 1.01 16 9 O -0.57 -5.47 13.63 -39.71 -0.54 -6.01 16 10 C 0.09 1.07 5.99 -3.54 -0.02 1.05 16 11 N -1.01 -13.99 3.26 -106.26 -0.35 -14.34 16 12 S 2.59 45.04 3.89 -107.50 -0.42 44.62 16 13 O -0.96 -18.53 14.04 -57.54 -0.81 -19.34 16 14 O -0.95 -17.86 11.37 -57.54 -0.65 -18.51 16 15 C -0.57 -10.70 4.87 37.16 0.18 -10.52 16 16 C 0.06 1.44 0.52 -155.66 -0.08 1.36 16 17 C -0.18 -4.01 7.29 37.16 0.27 -3.74 16 18 C -0.17 -3.77 7.40 37.16 0.27 -3.50 16 19 C -0.61 -16.28 8.40 -34.44 -0.29 -16.57 16 20 H 0.06 1.71 7.99 -52.48 -0.42 1.29 16 21 C 0.04 1.24 4.99 -17.83 -0.09 1.15 16 22 N -0.88 -25.93 13.69 55.43 0.76 -25.17 16 23 Si 1.05 25.32 23.47 -169.99 -3.99 21.33 16 24 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.23 5.90 56.52 0.33 -5.89 16 26 H -0.28 -6.49 6.85 56.52 0.39 -6.10 16 27 H 0.07 0.96 4.95 -51.93 -0.26 0.71 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 1.40 6.47 -51.93 -0.34 1.07 16 30 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.38 1.70 9.12 45.56 0.42 2.12 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.11 1.31 6.64 -51.93 -0.34 0.97 16 37 H 0.12 2.15 6.79 -51.92 -0.35 1.79 16 38 H 0.12 2.10 8.14 -51.93 -0.42 1.67 16 39 H 0.05 1.18 2.24 -51.93 -0.12 1.06 16 40 H 0.04 0.93 5.75 -51.93 -0.30 0.64 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.05 1.20 8.13 -51.93 -0.42 0.78 16 43 H 0.04 0.79 6.03 -51.93 -0.31 0.48 16 44 H 0.06 1.54 4.76 -51.93 -0.25 1.29 16 45 H 0.27 7.89 8.73 -40.82 -0.36 7.53 16 LS Contribution 339.34 15.07 5.11 5.11 Total: -1.00 -33.65 339.34 -6.77 -40.42 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.15 Total: 5.90 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 0.68 Total: -28.90 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.41 Total: -39.51 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -2.41 Total: -48.97 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -3.99 Total: 21.33 kcal Atomic # 16 Polarization: 45.04 SS G_CDS: -0.42 Total: 44.62 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.65 -6.77 -40.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451319935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.003 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.34 seconds