Wall clock time and date at job start Fri Apr 10 2020 14:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.51039 * 2 1 4 4 C 1.52874 * 109.62837 * 240.00528 * 2 1 3 5 5 N 1.47153 * 108.60944 * 187.89773 * 4 2 1 6 6 S 1.65599 * 120.98277 * 230.50243 * 5 4 2 7 7 O 1.42105 * 104.27655 * 153.64494 * 6 5 4 8 8 O 1.42101 * 104.27764 * 25.78931 * 6 5 4 9 9 C 1.81395 * 104.44748 * 269.71800 * 6 5 4 10 10 C 1.52999 * 109.46986 * 180.02562 * 9 6 5 11 11 C 1.53002 * 109.47371 * 299.99973 * 10 9 6 12 12 C 1.53002 * 109.47538 * 59.99873 * 10 9 6 13 13 C 1.50700 * 109.47535 * 180.02562 * 10 9 6 14 14 H 1.08006 * 119.99840 * 359.97438 * 13 10 9 15 15 C 1.37873 * 120.00463 * 180.02562 * 13 10 9 16 16 N 1.31518 * 120.00062 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00103 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47443 * 59.99483 * 17 15 13 19 19 H 1.48505 * 109.47343 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47001 * 299.99442 * 17 15 13 21 21 C 1.47150 * 118.03481 * 50.22538 * 5 4 2 22 22 C 1.53295 * 108.38850 * 309.72079 * 21 5 4 23 23 H 1.09000 * 109.51036 * 292.37874 * 22 21 5 24 24 C 1.52999 * 109.51600 * 172.22289 * 22 21 5 25 25 O 1.42903 * 109.47007 * 174.99654 * 24 22 21 26 26 O 1.42966 * 109.50740 * 120.09744 * 2 1 3 27 27 H 1.08997 * 109.47339 * 299.90413 * 1 2 3 28 28 H 1.09004 * 109.46623 * 59.89917 * 1 2 3 29 29 H 1.08997 * 109.47151 * 179.89377 * 1 2 3 30 30 H 1.09001 * 109.61762 * 68.07728 * 4 2 1 31 31 H 1.08998 * 109.52496 * 307.66381 * 4 2 1 32 32 H 1.09003 * 109.47393 * 299.99669 * 9 6 5 33 33 H 1.08994 * 109.47678 * 60.00285 * 9 6 5 34 34 H 1.09003 * 109.46921 * 59.99370 * 11 10 9 35 35 H 1.08991 * 109.47533 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.46766 * 300.00134 * 11 10 9 37 37 H 1.09004 * 109.47056 * 59.99837 * 12 10 9 38 38 H 1.08995 * 109.47291 * 180.02562 * 12 10 9 39 39 H 1.08996 * 109.46772 * 300.00176 * 12 10 9 40 40 H 0.96996 * 119.99792 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.67878 * 69.43819 * 21 5 4 42 42 H 1.08995 * 109.68465 * 189.99105 * 21 5 4 43 43 H 1.08992 * 109.47007 * 294.99956 * 24 22 21 44 44 H 1.08999 * 109.46615 * 54.99874 * 24 22 21 45 45 H 0.96695 * 113.99790 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0435 -0.7198 -1.2471 5 7 3.5024 -0.8749 -1.1325 6 16 4.5079 -0.4163 -2.3657 7 8 5.7383 -0.1160 -1.7213 8 8 3.7787 0.5884 -3.0572 9 6 4.6729 -1.9030 -3.3917 10 6 5.5905 -1.6041 -4.5790 11 6 4.9906 -0.4716 -5.4148 12 6 6.9689 -1.1835 -4.0651 13 6 5.7272 -2.8390 -5.4318 14 1 5.2115 -3.7465 -5.1545 15 6 6.5114 -2.8106 -6.5655 16 7 7.1398 -1.7057 -6.9029 17 14 6.6813 -4.3416 -7.6222 18 1 5.3436 -4.7495 -8.1214 19 1 7.5719 -4.0514 -8.7746 20 1 7.2633 -5.4408 -6.8109 21 6 4.0417 -1.4439 0.1129 22 6 3.4311 -0.6838 1.2959 23 1 3.8021 0.3411 1.3006 24 6 3.8210 -1.3756 2.6037 25 8 3.3503 -0.6029 3.7099 26 8 2.0074 -0.6758 1.1659 27 1 -0.3634 0.5123 0.8908 28 1 -0.3633 0.5154 -0.8891 29 1 -0.3633 -1.0276 -0.0019 30 1 1.8054 -0.1316 -2.1333 31 1 1.5747 -1.7011 -1.3203 32 1 5.1008 -2.7097 -2.7965 33 1 3.6910 -2.2029 -3.7576 34 1 4.8913 0.4218 -4.7981 35 1 5.6440 -0.2589 -6.2608 36 1 4.0086 -0.7712 -5.7809 37 1 7.3964 -1.9903 -3.4696 38 1 7.6225 -0.9700 -4.9108 39 1 6.8697 -0.2901 -3.4485 40 1 7.6912 -1.6857 -7.7007 41 1 3.7774 -2.4993 0.1789 42 1 5.1261 -1.3349 0.1268 43 1 3.3728 -2.3685 2.6372 44 1 4.9059 -1.4646 2.6582 45 1 3.5627 -0.9825 4.5735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451446092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:36 Heat of formation + Delta-G solvation = -163.826082 kcal Electronic energy + Delta-G solvation = -27249.248727 eV Core-core repulsion = 23394.379780 eV Total energy + Delta-G solvation = -3854.868947 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -39.71060 -36.93650 -36.67866 -36.32452 -35.42983 -34.75954 -33.27493 -31.70058 -29.66525 -26.82644 -26.63598 -25.76375 -25.26950 -24.71666 -22.11727 -21.00381 -19.50928 -18.57755 -17.61754 -17.56539 -17.00946 -16.07790 -15.99994 -15.52894 -15.36244 -14.97477 -14.75151 -14.55461 -14.33004 -14.01126 -13.13356 -13.10084 -12.94741 -12.82306 -12.55267 -12.45180 -12.38647 -12.05538 -11.99160 -11.68257 -11.37218 -11.17242 -11.16692 -11.07249 -11.00122 -10.74354 -10.62398 -10.43002 -10.32453 -10.31536 -10.20213 -10.08038 -9.69884 -9.59578 -8.90692 -8.62762 -8.43466 -6.06788 -4.19176 0.71169 2.91975 3.24556 3.30250 3.31717 3.44245 3.87497 4.26716 4.35172 4.52777 4.63587 4.68727 4.83855 4.90315 5.02010 5.06913 5.18380 5.19860 5.23920 5.32271 5.35711 5.52787 5.59313 5.62259 5.68725 5.73542 5.81986 5.98621 6.07394 6.32462 6.48323 6.65598 6.74802 6.85609 6.99135 7.08230 7.26601 7.38723 7.45663 7.64073 7.93687 8.05224 8.28839 8.79058 9.46413 10.94523 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022386 B = 0.003591 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.469585 B = 7796.070761 C = 8072.481964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 H 0.063 0.937 4 C 0.086 3.914 5 N -1.011 6.011 6 S 2.590 3.410 7 O -0.960 6.960 8 O -0.959 6.959 9 C -0.578 4.578 10 C 0.081 3.919 11 C -0.163 4.163 12 C -0.163 4.163 13 C -0.504 4.504 14 H 0.058 0.942 15 C 0.065 3.935 16 N -0.884 5.884 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.091 3.909 22 C 0.082 3.918 23 H 0.071 0.929 24 C 0.086 3.914 25 O -0.566 6.566 26 O -0.366 6.366 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.027 0.973 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.095 0.905 39 H 0.027 0.973 40 H 0.263 0.737 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.078 -0.171 16.058 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.017 3.983 3 H 0.081 0.919 4 C -0.039 4.039 5 N -0.847 5.847 6 S 2.691 3.309 7 O -0.950 6.950 8 O -0.949 6.949 9 C -0.712 4.712 10 C 0.079 3.921 11 C -0.221 4.221 12 C -0.221 4.221 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.137 4.137 16 N -0.522 5.522 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.203 1.203 21 C -0.036 4.036 22 C 0.022 3.978 23 H 0.089 0.911 24 C 0.007 3.993 25 O -0.371 6.371 26 O -0.285 6.285 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.046 0.954 35 H 0.114 0.886 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.114 0.886 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.125 0.875 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.924 1.088 15.475 17.897 hybrid contribution 0.351 -1.881 -0.500 1.977 sum -8.573 -0.792 14.975 17.274 Atomic orbital electron populations 1.21727 0.92225 1.03159 1.02885 1.22339 0.95367 0.95606 0.84973 0.91869 1.22099 0.79847 1.01909 1.00080 1.58129 1.16795 1.80274 1.29483 1.05849 0.73145 0.78135 0.73815 1.93528 1.43596 1.83880 1.74037 1.93530 1.72292 1.55539 1.73565 1.30553 1.09924 1.17782 1.12972 1.17948 0.89532 0.96427 0.88181 1.22275 1.00748 0.96041 1.03042 1.22273 1.00339 0.98106 1.01379 1.20896 1.29456 0.95898 1.08036 0.92356 1.24937 0.95206 0.96247 0.97306 1.69789 1.30687 1.26107 1.25573 0.86584 0.78065 0.83082 0.79821 1.20253 1.21145 1.20258 1.21949 1.00156 0.97879 0.83579 1.22367 0.82482 0.99986 0.92932 0.91109 1.22105 0.97850 0.94143 0.85189 1.86537 1.81969 1.52041 1.16512 1.87961 1.19961 1.77468 1.43123 0.91490 0.90579 0.91575 0.87660 0.90670 0.86395 0.86361 0.95426 0.88593 0.94459 0.94470 0.88597 0.95417 0.92639 0.90503 0.87532 0.92435 0.91577 0.77425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.57 37.16 0.36 -0.97 16 2 C 0.08 0.93 3.38 -26.80 -0.09 0.84 16 3 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.09 1.10 5.94 -3.75 -0.02 1.08 16 5 N -1.01 -14.74 3.28 -113.30 -0.37 -15.11 16 6 S 2.59 47.99 4.51 -107.50 -0.48 47.50 16 7 O -0.96 -19.71 14.24 -57.54 -0.82 -20.53 16 8 O -0.96 -19.80 14.23 -57.54 -0.82 -20.62 16 9 C -0.58 -11.19 5.12 37.16 0.19 -11.00 16 10 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 11 C -0.16 -3.99 7.77 37.16 0.29 -3.70 16 12 C -0.16 -3.98 7.78 37.16 0.29 -3.69 16 13 C -0.50 -13.11 8.01 -34.44 -0.28 -13.39 16 14 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 15 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 16 N -0.88 -23.94 9.35 55.43 0.52 -23.42 16 17 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.09 1.12 5.96 -3.53 -0.02 1.10 16 22 C 0.08 1.01 3.06 -26.58 -0.08 0.93 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 24 C 0.09 0.80 6.71 37.16 0.25 1.05 16 25 O -0.57 -5.70 13.63 -39.71 -0.54 -6.24 16 26 O -0.37 -4.83 10.00 -39.71 -0.40 -5.23 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.11 1.35 6.87 -51.93 -0.36 0.99 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 33 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 34 H 0.03 0.64 5.46 -51.93 -0.28 0.35 16 35 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 39 H 0.03 0.64 5.46 -51.93 -0.28 0.35 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.11 1.31 6.88 -51.93 -0.36 0.95 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.38 1.85 9.12 45.56 0.42 2.26 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -33.14 356.88 -8.38 -41.52 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.53 Total: 5.56 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 0.71 Total: -24.25 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.15 Total: -38.53 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -2.58 Total: -52.62 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 47.99 SS G_CDS: -0.48 Total: 47.50 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.14 -8.38 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451446092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.310 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds