Wall clock time and date at job start Fri Apr 10 2020 14:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99314 * 2 1 4 4 C 1.53003 * 109.46875 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47077 * 64.49689 * 4 3 2 6 6 C 1.46496 * 120.00026 * 77.68405 * 5 4 3 7 7 H 1.09001 * 110.56422 * 3.73489 * 6 5 4 8 8 C 1.54688 * 110.61473 * 241.01222 * 6 5 4 9 9 C 1.54486 * 104.07846 * 241.48681 * 8 6 5 10 10 O 1.44430 * 104.80268 * 335.93005 * 9 8 6 11 11 C 1.44422 * 105.27366 * 40.51097 * 10 9 8 12 12 H 1.08999 * 110.37367 * 78.43614 * 11 10 9 13 13 C 1.53007 * 110.36901 * 200.65446 * 11 10 9 14 14 S 1.65606 * 120.00037 * 257.68155 * 5 4 3 15 15 O 1.42099 * 104.27449 * 32.81011 * 14 5 4 16 16 O 1.42099 * 104.27355 * 160.66357 * 14 5 4 17 17 C 1.81393 * 104.44892 * 276.73442 * 14 5 4 18 18 C 1.53005 * 109.47143 * 174.60175 * 17 14 5 19 19 C 1.50700 * 109.47362 * 180.02562 * 18 17 14 20 20 H 1.08000 * 119.99750 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99689 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00334 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99467 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47023 * 60.00093 * 23 21 19 25 25 H 1.48498 * 109.47045 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47336 * 299.99917 * 23 21 19 27 27 H 1.09006 * 109.46513 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47382 * 300.00082 * 1 2 3 29 29 H 1.09000 * 109.47275 * 60.00741 * 1 2 3 30 30 H 1.08998 * 109.47853 * 60.00102 * 3 2 1 31 31 H 1.08996 * 109.47213 * 299.99611 * 3 2 1 32 32 H 1.09003 * 109.46892 * 304.49730 * 4 3 2 33 33 H 1.09001 * 109.47076 * 184.49951 * 4 3 2 34 34 H 1.08995 * 110.57919 * 122.79798 * 8 6 5 35 35 H 1.09003 * 110.42459 * 0.09770 * 8 6 5 36 36 H 1.08996 * 110.37246 * 217.09263 * 9 8 6 37 37 H 1.09005 * 110.37059 * 94.75882 * 9 8 6 38 38 H 1.08998 * 109.46958 * 57.05427 * 13 11 10 39 39 H 1.08999 * 109.46980 * 177.04988 * 13 11 10 40 40 H 1.08995 * 109.47085 * 297.04986 * 13 11 10 41 41 H 1.08998 * 109.47511 * 294.60288 * 17 14 5 42 42 H 1.09001 * 109.47271 * 54.60641 * 17 14 5 43 43 H 1.08998 * 109.47010 * 300.00420 * 18 17 14 44 44 H 1.09001 * 109.46656 * 60.00090 * 18 17 14 45 45 H 0.96998 * 120.00114 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1849 0.0006 5 7 3.9757 0.5533 -1.2457 6 6 4.0270 1.3340 -2.4842 7 1 3.7703 2.3756 -2.2911 8 6 3.0794 0.7310 -3.5478 9 6 4.0200 0.3342 -4.7074 10 8 5.1763 1.1855 -4.5523 11 6 5.4264 1.2324 -3.1307 12 1 5.9302 0.3228 -2.8038 13 6 6.2667 2.4614 -2.7779 14 16 4.4157 -1.0433 -1.2545 15 8 3.5798 -1.6424 -0.2739 16 8 4.3299 -1.4228 -2.6212 17 6 6.1434 -1.0397 -0.7021 18 6 6.6296 -2.4812 -0.5386 19 6 8.0648 -2.4783 -0.0791 20 1 8.5789 -1.5420 0.0800 21 6 8.7218 -3.6711 0.1372 22 7 8.0961 -4.8112 -0.0580 23 14 10.5011 -3.6674 0.7061 24 1 10.6030 -2.9604 2.0080 25 1 10.9728 -5.0665 0.8649 26 1 11.3416 -2.9725 -0.3017 27 1 -0.3632 -1.0278 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.6885 1.8465 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8513 0.5761 0.8479 33 1 3.9783 2.1775 0.0813 34 1 2.3549 1.4741 -3.8808 35 1 2.5715 -0.1478 -3.1503 36 1 3.5381 0.5198 -5.6672 37 1 4.3063 -0.7141 -4.6220 38 1 5.7564 3.3612 -3.1216 39 1 6.4023 2.5109 -1.6975 40 1 7.2398 2.3877 -3.2632 41 1 6.7605 -0.5299 -1.4420 42 1 6.2184 -0.5205 0.2534 43 1 6.0126 -2.9910 0.2013 44 1 6.5546 -3.0004 -1.4941 45 1 8.5582 -5.6503 0.0945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487355878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:48 Heat of formation + Delta-G solvation = -156.908759 kcal Electronic energy + Delta-G solvation = -27721.262754 eV Core-core repulsion = 23866.693765 eV Total energy + Delta-G solvation = -3854.568989 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.80015 -37.99951 -36.42994 -35.63363 -35.25261 -33.89296 -31.72288 -31.36930 -31.01086 -28.85142 -26.27980 -25.66221 -25.29004 -22.52288 -22.14532 -21.75831 -20.98459 -18.45718 -17.29702 -17.07672 -16.52031 -16.23109 -15.83987 -15.60021 -15.31611 -15.11415 -14.99120 -14.73982 -14.54416 -14.30854 -13.45284 -13.31873 -13.10225 -12.86483 -12.47948 -12.42359 -12.27936 -12.06724 -11.74521 -11.65899 -11.62751 -11.41316 -11.37660 -11.26616 -11.06617 -11.02546 -10.96134 -10.89019 -10.53329 -10.36425 -10.32049 -9.72664 -9.64087 -9.54601 -9.27258 -8.75608 -8.48360 -6.10523 -4.16188 0.79947 2.98038 3.28384 3.33158 3.34938 3.80433 3.99690 4.32831 4.39381 4.41168 4.56187 4.72886 4.90080 4.97611 5.04088 5.06741 5.16287 5.24636 5.24963 5.30177 5.32613 5.35441 5.41766 5.50206 5.62487 5.63748 5.67161 5.70395 5.72134 5.93357 5.97413 6.04880 6.09674 6.13294 6.34168 6.52166 6.61936 6.99566 7.22372 7.31479 7.38228 7.82055 8.19462 8.86819 9.48447 11.00511 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.004726 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.944867 B = 5923.780209 C = 6976.612278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.041 3.959 4 C 0.126 3.874 5 N -0.993 5.993 6 C 0.134 3.866 7 H 0.101 0.899 8 C -0.163 4.163 9 C 0.044 3.956 10 O -0.368 6.368 11 C 0.051 3.949 12 H 0.070 0.930 13 C -0.146 4.146 14 S 2.584 3.416 15 O -0.938 6.938 16 O -0.962 6.962 17 C -0.600 4.600 18 C 0.031 3.969 19 C -0.520 4.520 20 H 0.060 0.940 21 C 0.059 3.941 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.232 16.793 -2.740 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.037 4.037 4 C 0.000 4.000 5 N -0.827 5.827 6 C 0.026 3.974 7 H 0.119 0.881 8 C -0.202 4.202 9 C -0.033 4.033 10 O -0.287 6.287 11 C -0.008 4.008 12 H 0.087 0.913 13 C -0.203 4.203 14 S 2.682 3.318 15 O -0.928 6.928 16 O -0.953 6.953 17 C -0.732 4.732 18 C -0.008 4.008 19 C -0.560 4.560 20 H 0.079 0.921 21 C -0.144 4.144 22 N -0.528 5.528 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.200 1.200 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.582 15.849 -3.148 20.480 hybrid contribution 1.093 0.466 0.701 1.379 sum -11.489 16.315 -2.448 20.104 Atomic orbital electron populations 1.22729 0.82018 1.02746 0.99163 1.88221 1.18616 1.26040 1.95126 1.22984 0.94683 0.86061 1.00009 1.21328 0.92640 0.99792 0.86266 1.57898 1.81077 1.30639 1.13137 1.22184 0.94920 0.96548 0.83724 0.88060 1.23356 0.98577 1.01760 0.96541 1.23555 0.85280 0.96894 0.97531 1.89084 1.48455 1.69460 1.21700 1.23484 0.95014 0.99518 0.82762 0.91278 1.21811 1.00261 0.96330 1.01891 1.06081 0.78333 0.72325 0.75050 1.93605 1.63883 1.73248 1.62040 1.93504 1.87299 1.80833 1.33658 1.30706 1.20891 1.10589 1.11017 1.18923 0.98367 0.84813 0.98667 1.20961 0.95869 0.92685 1.46466 0.92139 1.25056 0.98575 0.95476 0.95285 1.69941 1.37214 0.97470 1.48224 0.86546 0.84366 0.77194 0.79274 1.20080 1.21051 1.20049 0.89670 0.94497 0.94674 0.92747 0.93290 0.88769 0.89198 0.91032 0.89305 0.89919 0.88835 0.91728 0.90855 0.91355 0.86411 0.86448 0.94763 0.95125 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.36 -5.22 9.16 -51.44 -0.47 -5.69 16 3 C 0.04 0.44 6.21 37.16 0.23 0.67 16 4 C 0.13 1.37 5.74 -4.04 -0.02 1.34 16 5 N -0.99 -13.42 2.60 -105.54 -0.27 -13.70 16 6 C 0.13 1.63 3.03 -66.27 -0.20 1.43 16 7 H 0.10 0.94 7.71 -51.93 -0.40 0.54 16 8 C -0.16 -2.11 6.01 -25.06 -0.15 -2.26 16 9 C 0.04 0.63 7.15 37.94 0.27 0.90 16 10 O -0.37 -5.60 11.34 -35.23 -0.40 -6.00 16 11 C 0.05 0.71 3.21 -25.95 -0.08 0.63 16 12 H 0.07 1.09 4.16 -51.93 -0.22 0.88 16 13 C -0.15 -1.57 9.52 37.16 0.35 -1.22 16 14 S 2.58 47.58 4.35 -107.50 -0.47 47.11 16 15 O -0.94 -20.01 15.64 -64.51 -1.01 -21.02 16 16 O -0.96 -19.12 11.75 -57.54 -0.68 -19.80 16 17 C -0.60 -11.77 5.86 37.16 0.22 -11.55 16 18 C 0.03 0.81 4.98 -27.88 -0.14 0.67 16 19 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 23 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.09 1.10 7.56 -51.93 -0.39 0.71 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.32 6.68 -51.93 -0.35 0.97 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.56 6.25 -51.93 -0.32 1.23 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.12 2.14 6.33 -51.92 -0.33 1.81 16 42 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 43 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -35.08 364.92 -8.37 -43.45 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.47 Total: 0.98 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 1.18 Total: -21.18 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.46 Total: -39.64 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -2.56 Total: -52.51 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 47.58 SS G_CDS: -0.47 Total: 47.11 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.08 -8.37 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487355878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.455 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds