Wall clock time and date at job start Fri Apr 10 2020 14:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99314 * 2 1 4 4 C 1.53003 * 109.46875 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47077 * 64.49689 * 4 3 2 6 6 C 1.46496 * 120.00026 * 77.68405 * 5 4 3 7 7 H 1.09001 * 110.56422 * 3.73489 * 6 5 4 8 8 C 1.54688 * 110.61473 * 241.01222 * 6 5 4 9 9 C 1.54486 * 104.07846 * 241.48681 * 8 6 5 10 10 O 1.44430 * 104.80268 * 335.93005 * 9 8 6 11 11 C 1.44422 * 105.27366 * 40.51097 * 10 9 8 12 12 H 1.08999 * 110.37367 * 78.43614 * 11 10 9 13 13 C 1.53007 * 110.36901 * 200.65446 * 11 10 9 14 14 S 1.65606 * 120.00037 * 257.68155 * 5 4 3 15 15 O 1.42099 * 104.27449 * 32.81011 * 14 5 4 16 16 O 1.42099 * 104.27355 * 160.66357 * 14 5 4 17 17 C 1.81393 * 104.44892 * 276.73442 * 14 5 4 18 18 C 1.53005 * 109.47143 * 174.60175 * 17 14 5 19 19 C 1.50700 * 109.47362 * 180.02562 * 18 17 14 20 20 H 1.08000 * 119.99750 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99689 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00334 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99467 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47023 * 60.00093 * 23 21 19 25 25 H 1.48498 * 109.47045 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47336 * 299.99917 * 23 21 19 27 27 H 1.09006 * 109.46513 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47382 * 300.00082 * 1 2 3 29 29 H 1.09000 * 109.47275 * 60.00741 * 1 2 3 30 30 H 1.08998 * 109.47853 * 60.00102 * 3 2 1 31 31 H 1.08996 * 109.47213 * 299.99611 * 3 2 1 32 32 H 1.09003 * 109.46892 * 304.49730 * 4 3 2 33 33 H 1.09001 * 109.47076 * 184.49951 * 4 3 2 34 34 H 1.08995 * 110.57919 * 122.79798 * 8 6 5 35 35 H 1.09003 * 110.42459 * 0.09770 * 8 6 5 36 36 H 1.08996 * 110.37246 * 217.09263 * 9 8 6 37 37 H 1.09005 * 110.37059 * 94.75882 * 9 8 6 38 38 H 1.08998 * 109.46958 * 57.05427 * 13 11 10 39 39 H 1.08999 * 109.46980 * 177.04988 * 13 11 10 40 40 H 1.08995 * 109.47085 * 297.04986 * 13 11 10 41 41 H 1.08998 * 109.47511 * 294.60288 * 17 14 5 42 42 H 1.09001 * 109.47271 * 54.60641 * 17 14 5 43 43 H 1.08998 * 109.47010 * 300.00420 * 18 17 14 44 44 H 1.09001 * 109.46656 * 60.00090 * 18 17 14 45 45 H 0.96998 * 120.00114 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1849 0.0006 5 7 3.9757 0.5533 -1.2457 6 6 4.0270 1.3340 -2.4842 7 1 3.7703 2.3756 -2.2911 8 6 3.0794 0.7310 -3.5478 9 6 4.0200 0.3342 -4.7074 10 8 5.1763 1.1855 -4.5523 11 6 5.4264 1.2324 -3.1307 12 1 5.9302 0.3228 -2.8038 13 6 6.2667 2.4614 -2.7779 14 16 4.4157 -1.0433 -1.2545 15 8 3.5798 -1.6424 -0.2739 16 8 4.3299 -1.4228 -2.6212 17 6 6.1434 -1.0397 -0.7021 18 6 6.6296 -2.4812 -0.5386 19 6 8.0648 -2.4783 -0.0791 20 1 8.5789 -1.5420 0.0800 21 6 8.7218 -3.6711 0.1372 22 7 8.0961 -4.8112 -0.0580 23 14 10.5011 -3.6674 0.7061 24 1 10.6030 -2.9604 2.0080 25 1 10.9728 -5.0665 0.8649 26 1 11.3416 -2.9725 -0.3017 27 1 -0.3632 -1.0278 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.6885 1.8465 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8513 0.5761 0.8479 33 1 3.9783 2.1775 0.0813 34 1 2.3549 1.4741 -3.8808 35 1 2.5715 -0.1478 -3.1503 36 1 3.5381 0.5198 -5.6672 37 1 4.3063 -0.7141 -4.6220 38 1 5.7564 3.3612 -3.1216 39 1 6.4023 2.5109 -1.6975 40 1 7.2398 2.3877 -3.2632 41 1 6.7605 -0.5299 -1.4420 42 1 6.2184 -0.5205 0.2534 43 1 6.0126 -2.9910 0.2013 44 1 6.5546 -3.0004 -1.4941 45 1 8.5582 -5.6503 0.0945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487355878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:48 Heat of formation + Delta-G solvation = -183.098141 kcal Electronic energy + Delta-G solvation = -27722.398411 eV Core-core repulsion = 23866.693765 eV Total energy + Delta-G solvation = -3855.704646 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.85484 -38.92114 -37.93321 -36.89337 -36.60126 -35.92669 -33.22923 -32.58128 -32.21885 -29.78536 -27.63420 -27.11711 -26.30149 -23.85542 -23.25286 -22.98587 -22.28147 -19.84500 -18.89167 -18.16399 -18.10969 -17.20812 -17.09190 -16.67205 -16.59623 -16.53934 -16.34025 -16.10391 -15.68000 -15.53768 -14.99292 -14.51078 -14.38761 -13.99680 -13.84124 -13.72475 -13.28895 -13.18688 -13.03343 -12.93999 -12.91626 -12.86731 -12.78103 -12.67899 -12.42003 -12.30110 -12.25427 -12.12916 -12.02701 -11.83320 -11.78142 -11.49952 -11.10815 -10.69094 -10.63970 -10.45874 -9.90711 -8.27127 -6.42016 -0.67006 1.39387 1.43453 1.51582 1.73786 2.37173 2.85808 2.98002 3.05835 3.07599 3.25291 3.41263 3.67051 3.83571 3.91147 4.09064 4.11199 4.21616 4.26436 4.30594 4.40442 4.45736 4.53796 4.58141 4.62856 4.70643 4.73792 4.79810 4.84748 4.91240 4.97145 5.02562 5.07185 5.12321 5.20018 5.22869 5.25494 5.32875 5.61592 5.66124 5.94454 6.04195 6.45201 6.71098 7.28376 8.85162 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.004726 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.944867 B = 5923.780209 C = 6976.612278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.034 3.966 4 C 0.112 3.888 5 N -0.978 5.978 6 C 0.137 3.863 7 H 0.150 0.850 8 C -0.164 4.164 9 C 0.038 3.962 10 O -0.381 6.381 11 C 0.038 3.962 12 H 0.039 0.961 13 C -0.142 4.142 14 S 2.603 3.397 15 O -0.972 6.972 16 O -0.984 6.984 17 C -0.600 4.600 18 C 0.027 3.973 19 C -0.540 4.540 20 H 0.076 0.924 21 C -0.003 4.003 22 N -0.935 5.935 23 Si 0.974 3.026 24 H -0.260 1.260 25 H -0.283 1.283 26 H -0.263 1.263 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.141 0.859 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.132 0.868 42 H 0.141 0.859 43 H 0.004 0.996 44 H -0.001 1.001 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.078 20.727 -2.137 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.044 4.044 4 C -0.012 4.012 5 N -0.816 5.816 6 C 0.030 3.970 7 H 0.167 0.833 8 C -0.202 4.202 9 C -0.039 4.039 10 O -0.300 6.300 11 C -0.021 4.021 12 H 0.057 0.943 13 C -0.199 4.199 14 S 2.700 3.300 15 O -0.962 6.962 16 O -0.974 6.974 17 C -0.731 4.731 18 C -0.012 4.012 19 C -0.579 4.579 20 H 0.094 0.906 21 C -0.202 4.202 22 N -0.575 5.575 23 Si 0.797 3.203 24 H -0.185 1.185 25 H -0.208 1.208 26 H -0.188 1.188 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.159 0.841 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.150 0.850 42 H 0.159 0.841 43 H 0.023 0.977 44 H 0.017 0.983 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.418 19.789 -2.534 23.500 hybrid contribution 0.963 -0.724 0.461 1.290 sum -11.455 19.065 -2.074 22.338 Atomic orbital electron populations 1.22837 0.80743 1.02673 1.00829 1.88169 1.20373 1.28695 1.95500 1.23223 0.93994 0.84999 1.02156 1.21809 0.93557 1.01684 0.84127 1.57448 1.80300 1.28840 1.15033 1.22441 0.93683 0.98334 0.82510 0.83268 1.23385 0.98910 1.01794 0.96160 1.23567 0.85703 0.95043 0.99598 1.89071 1.48875 1.69170 1.22841 1.23696 0.96322 0.99803 0.82275 0.94297 1.21855 0.99412 0.95561 1.03120 1.05204 0.77234 0.73734 0.73874 1.93560 1.64308 1.75236 1.63087 1.93489 1.87200 1.82245 1.34497 1.30632 1.22901 1.06557 1.12982 1.18738 0.97991 0.88474 0.95999 1.21475 0.96837 0.93476 1.46121 0.90625 1.26139 1.03824 0.94972 0.95236 1.70101 1.39476 0.98309 1.49576 0.85365 0.78050 0.77444 0.79432 1.18485 1.20847 1.18774 0.90818 0.92563 0.93146 0.90050 0.91463 0.90124 0.84130 0.87531 0.91790 0.87568 0.92494 0.89420 0.88932 0.92272 0.85008 0.84127 0.97730 0.98300 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.76 16 2 O -0.41 -11.31 9.16 -133.49 -1.22 -12.53 16 3 C 0.03 0.61 6.21 71.98 0.45 1.05 16 4 C 0.11 2.07 5.74 86.38 0.50 2.56 16 5 N -0.98 -24.48 2.60 -487.81 -1.27 -25.74 16 6 C 0.14 2.91 3.03 46.07 0.14 3.05 16 7 H 0.15 1.85 7.71 -2.39 -0.02 1.83 16 8 C -0.16 -3.91 6.01 31.67 0.19 -3.72 16 9 C 0.04 1.06 7.15 72.49 0.52 1.58 16 10 O -0.38 -11.13 11.34 -148.98 -1.69 -12.82 16 11 C 0.04 0.98 3.21 31.10 0.10 1.08 16 12 H 0.04 1.23 4.16 -2.39 -0.01 1.22 16 13 C -0.14 -2.58 9.52 71.98 0.69 -1.90 16 14 S 2.60 98.30 4.35 -56.49 -0.25 98.06 16 15 O -0.97 -43.15 15.64 -120.98 -1.89 -45.04 16 16 O -0.98 -41.18 11.75 -127.65 -1.50 -42.68 16 17 C -0.60 -24.04 5.86 71.98 0.42 -23.62 16 18 C 0.03 1.46 4.98 29.85 0.15 1.61 16 19 C -0.54 -30.71 9.11 25.60 0.23 -30.47 16 20 H 0.08 3.95 7.74 -2.91 -0.02 3.92 16 21 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 22 N -0.94 -58.15 13.29 21.45 0.28 -57.87 16 23 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 27 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 32 H 0.08 1.74 7.56 -2.39 -0.02 1.72 16 33 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.88 6.68 -2.39 -0.02 1.86 16 36 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.06 2.01 6.25 -2.38 -0.01 1.99 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.13 4.84 6.33 -2.39 -0.02 4.83 16 42 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 43 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -81.61 364.92 0.54 -81.07 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.96 Total: 18.45 kcal Atomic # 6 Polarization: -51.83 SS G_CDS: 5.09 Total: -46.74 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -0.98 Total: -83.61 kcal Atomic # 8 Polarization: -106.77 SS G_CDS: -6.31 Total: -113.08 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 98.30 SS G_CDS: -0.25 Total: 98.06 kcal Total: -81.61 0.54 -81.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487355878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.033 kcal (2) G-P(sol) polarization free energy of solvation -81.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds