Wall clock time and date at job start Fri Apr 10 2020 14:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47441 * 2 1 4 4 O 1.42898 * 109.47076 * 120.00459 * 2 1 3 5 5 C 1.42892 * 114.00418 * 143.55729 * 4 2 1 6 6 C 1.53001 * 110.46012 * 64.86330 * 5 4 2 7 7 S 1.81400 * 109.47108 * 63.47910 * 6 5 4 8 8 O 1.42100 * 110.54186 * 68.38060 * 7 6 5 9 9 O 1.42103 * 110.54278 * 291.62672 * 7 6 5 10 10 N 1.65605 * 104.44704 * 180.02562 * 7 6 5 11 11 C 1.46500 * 120.00061 * 64.99955 * 10 7 6 12 12 C 1.53001 * 109.47046 * 164.99849 * 11 10 7 13 13 C 1.50700 * 109.47142 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99871 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99813 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99700 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00256 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46956 * 270.00263 * 17 15 13 19 19 H 1.48499 * 109.46987 * 29.99721 * 17 15 13 20 20 H 1.48501 * 109.47345 * 149.99980 * 17 15 13 21 21 C 1.54506 * 110.51107 * 302.25632 * 5 4 2 22 22 C 1.54473 * 104.06581 * 241.21770 * 21 5 4 23 23 O 1.44422 * 104.80333 * 23.97577 * 22 21 5 24 24 C 1.44427 * 105.27603 * 319.48934 * 23 22 21 25 25 H 1.08999 * 109.47280 * 300.00395 * 1 2 3 26 26 H 1.09009 * 109.47334 * 59.99668 * 1 2 3 27 27 H 1.08991 * 109.47335 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46942 * 239.99948 * 2 1 3 29 29 H 1.09004 * 109.46923 * 174.55355 * 3 2 1 30 30 H 1.08997 * 109.47141 * 294.55605 * 3 2 1 31 31 H 1.09001 * 109.46729 * 54.55547 * 3 2 1 32 32 H 1.09006 * 109.46745 * 303.47838 * 6 5 4 33 33 H 1.08997 * 109.47624 * 183.48465 * 6 5 4 34 34 H 0.97001 * 119.99809 * 245.00124 * 10 7 6 35 35 H 1.09004 * 109.46967 * 44.99959 * 11 10 7 36 36 H 1.08992 * 109.47366 * 284.99771 * 11 10 7 37 37 H 1.08995 * 109.47201 * 60.00006 * 12 11 10 38 38 H 1.09008 * 109.47185 * 300.00107 * 12 11 10 39 39 H 0.96996 * 119.99905 * 180.02562 * 16 15 13 40 40 H 1.09003 * 110.51374 * 359.86590 * 21 5 4 41 41 H 1.09008 * 110.51171 * 122.43584 * 21 5 4 42 42 H 1.09004 * 110.37444 * 142.80768 * 22 21 5 43 43 H 1.09004 * 110.37399 * 265.03465 * 22 21 5 44 44 H 1.08990 * 110.37083 * 281.67780 * 24 23 22 45 45 H 1.08998 * 110.37167 * 159.33921 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1901 -1.4442 0.9504 6 6 4.3624 -0.5320 0.5838 7 16 4.7272 0.5727 1.9755 8 8 5.2556 -0.1626 3.0706 9 8 3.6721 1.5064 2.1609 10 7 5.9991 1.4937 1.4496 11 6 5.8202 2.4162 0.3257 12 6 6.9941 3.3962 0.2784 13 6 6.8098 4.3456 -0.8773 14 1 5.9419 4.2589 -1.5142 15 6 7.7492 5.3248 -1.1217 16 7 7.5885 6.1530 -2.1306 17 14 9.2499 5.4753 -0.0197 18 1 8.9471 6.3951 1.1062 19 1 9.6064 4.1372 0.5166 20 1 10.3893 6.0132 -0.8056 21 6 2.9563 -2.4967 -0.1563 22 6 3.1815 -3.8482 0.5572 23 8 2.9302 -3.5749 1.9529 24 6 3.5289 -2.2843 2.2018 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1257 1.4440 0.0975 30 1 1.7585 1.9274 -0.9347 31 1 1.5993 1.9837 0.8372 32 1 4.1007 0.0614 -0.2924 33 1 5.2399 -1.1393 0.3622 34 1 6.8626 1.4223 1.8857 35 1 4.8899 2.9695 0.4543 36 1 5.7810 1.8511 -0.6055 37 1 7.9244 2.8430 0.1498 38 1 7.0333 3.9614 1.2097 39 1 8.2495 6.8417 -2.3027 40 1 1.9370 -2.4309 -0.5369 41 1 3.6744 -2.3656 -0.9659 42 1 2.4807 -4.5954 0.1847 43 1 4.2076 -4.1867 0.4139 44 1 4.6088 -2.3820 2.3123 45 1 3.0950 -1.8302 3.0926 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595319486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:33 Heat of formation + Delta-G solvation = -163.273554 kcal Electronic energy + Delta-G solvation = -27268.751923 eV Core-core repulsion = 23413.906935 eV Total energy + Delta-G solvation = -3854.844987 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.62109 -37.92816 -36.98498 -35.86418 -35.57837 -33.58094 -32.75802 -31.89224 -30.31275 -29.76604 -27.61944 -26.58628 -24.63319 -23.49693 -21.94462 -21.05241 -20.29939 -19.27599 -17.84918 -17.50746 -16.89291 -16.76977 -16.03624 -15.94580 -15.69938 -15.36566 -15.25714 -14.54664 -14.32332 -14.16671 -14.08929 -13.69111 -13.38194 -12.98012 -12.71442 -12.67970 -12.49804 -12.30789 -12.17546 -11.94845 -11.88120 -11.82297 -11.74157 -11.58614 -11.47069 -11.46455 -11.07607 -10.79673 -10.63376 -10.57394 -10.08631 -10.02368 -9.96601 -9.87281 -9.40367 -9.07771 -8.65523 -6.16630 -4.17078 0.29568 2.86296 3.14495 3.23788 3.31681 3.32889 3.49290 3.76618 3.93385 4.16442 4.25288 4.34398 4.41226 4.67165 4.72428 4.81717 4.91691 4.99126 5.06377 5.11424 5.17288 5.20873 5.29973 5.37000 5.44204 5.52215 5.53220 5.54891 5.72416 5.79328 5.83265 5.93164 6.06420 6.16989 6.36022 6.41131 6.48151 6.95484 7.05479 7.14971 7.22642 7.62709 8.36194 8.85408 9.44151 10.96134 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.003701 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.354595 B = 7563.276677 C = 8212.219210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.356 6.356 5 C 0.101 3.899 6 C -0.671 4.671 7 S 2.611 3.389 8 O -0.966 6.966 9 O -0.931 6.931 10 N -1.119 6.119 11 C 0.123 3.877 12 C -0.018 4.018 13 C -0.526 4.526 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.898 5.898 17 Si 0.880 3.120 18 H -0.275 1.275 19 H -0.266 1.266 20 H -0.287 1.287 21 C -0.175 4.175 22 C 0.044 3.956 23 O -0.360 6.360 24 C 0.040 3.960 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.414 0.586 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.023 0.977 38 H 0.022 0.978 39 H 0.265 0.735 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.616 -18.573 2.859 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.275 6.275 5 C 0.059 3.941 6 C -0.798 4.798 7 S 2.701 3.299 8 O -0.956 6.956 9 O -0.921 6.921 10 N -0.880 5.880 11 C -0.002 4.002 12 C -0.057 4.057 13 C -0.565 4.565 14 H 0.094 0.906 15 C -0.132 4.132 16 N -0.536 5.536 17 Si 0.707 3.293 18 H -0.201 1.201 19 H -0.190 1.190 20 H -0.213 1.213 21 C -0.213 4.213 22 C -0.033 4.033 23 O -0.278 6.278 24 C -0.037 4.037 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.249 0.751 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.359 -18.458 3.820 21.508 hybrid contribution 1.716 0.195 -0.656 1.848 sum -8.643 -18.264 3.164 20.452 Atomic orbital electron populations 1.21901 0.93390 1.02434 1.03014 1.22304 0.95244 0.93227 0.87683 1.22541 1.01758 0.95642 1.03202 1.88107 1.40564 1.64052 1.34778 1.22457 0.84304 0.90404 0.96894 1.31481 1.07690 1.16521 1.24077 1.04966 0.74302 0.75198 0.75434 1.93573 1.78843 1.74309 1.48895 1.93641 1.56012 1.58518 1.83938 1.55690 1.28446 1.55499 1.48367 1.21494 1.02348 0.90941 0.85407 1.19755 0.93181 0.94480 0.98263 1.20935 1.09427 1.13828 1.12295 0.90634 1.24984 0.98003 0.95160 0.95016 1.69895 1.36006 1.18673 1.29030 0.86784 0.82732 0.78902 0.80895 1.20087 1.19015 1.21256 1.23626 1.04351 0.94819 0.98543 1.23416 1.01521 0.96598 0.81727 1.89189 1.77943 1.34856 1.25839 1.23830 0.99667 0.83310 0.96907 0.91350 0.91050 0.92255 0.91667 0.92757 0.91620 0.90050 0.83626 0.83821 0.75132 0.90579 0.92622 0.95832 0.95952 0.92507 0.88958 0.89127 0.88520 0.91674 0.88957 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.56 37.15 0.36 -1.06 16 2 C 0.07 0.80 2.31 -26.73 -0.06 0.74 16 3 C -0.17 -2.22 7.80 37.16 0.29 -1.93 16 4 O -0.36 -4.55 9.02 -36.11 -0.33 -4.88 16 5 C 0.10 1.13 0.73 -89.05 -0.06 1.07 16 6 C -0.67 -7.22 4.16 37.16 0.15 -7.07 16 7 S 2.61 37.78 4.65 -107.50 -0.50 37.28 16 8 O -0.97 -15.41 16.30 -57.54 -0.94 -16.34 16 9 O -0.93 -16.07 13.79 -59.86 -0.83 -16.89 16 10 N -1.12 -16.96 5.89 -10.61 -0.06 -17.02 16 11 C 0.12 2.20 5.95 -4.04 -0.02 2.17 16 12 C -0.02 -0.39 4.18 -27.88 -0.12 -0.51 16 13 C -0.53 -14.09 9.66 -34.44 -0.33 -14.43 16 14 H 0.08 2.14 7.99 -52.49 -0.42 1.72 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -26.58 13.96 55.43 0.77 -25.81 16 17 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.17 -1.48 5.48 -25.17 -0.14 -1.62 16 22 C 0.04 0.37 7.63 37.93 0.29 0.66 16 23 O -0.36 -4.27 11.65 -35.23 -0.41 -4.68 16 24 C 0.04 0.47 5.50 37.93 0.21 0.68 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.60 6.16 -51.93 -0.32 0.28 16 29 H 0.05 0.72 3.47 -51.93 -0.18 0.54 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.15 7.84 -51.93 -0.41 0.75 16 32 H 0.15 1.45 5.74 -51.92 -0.30 1.15 16 33 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.41 5.78 8.62 -34.47 -0.30 5.48 16 35 H 0.08 1.41 7.54 -51.93 -0.39 1.01 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 38 H 0.02 0.50 7.57 -51.92 -0.39 0.10 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.09 0.74 6.85 -51.93 -0.36 0.38 16 41 H 0.09 0.61 7.73 -51.92 -0.40 0.21 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 1.00 7.10 -51.93 -0.37 0.63 16 45 H 0.11 1.40 8.09 -51.93 -0.42 0.98 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -33.33 357.24 -8.29 -41.62 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.17 Total: 4.62 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 0.46 Total: -19.41 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.71 Total: -42.83 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -2.50 Total: -42.80 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Atomic # 16 Polarization: 37.78 SS G_CDS: -0.50 Total: 37.28 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.33 -8.29 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595319486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.657 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds