Wall clock time and date at job start Fri Apr 10 2020 14:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46549 * 2 1 4 4 O 1.42901 * 109.47210 * 240.00594 * 2 1 3 5 5 C 1.42894 * 113.99863 * 225.69861 * 4 2 1 6 6 C 1.53002 * 110.45342 * 293.22986 * 5 4 2 7 7 S 1.81400 * 109.47371 * 295.24993 * 6 5 4 8 8 O 1.42100 * 110.54332 * 291.62623 * 7 6 5 9 9 O 1.42100 * 110.54467 * 68.37381 * 7 6 5 10 10 N 1.65595 * 104.45194 * 180.02562 * 7 6 5 11 11 C 1.46508 * 120.00138 * 64.99816 * 10 7 6 12 12 C 1.52996 * 109.46947 * 165.00075 * 11 10 7 13 13 C 1.50699 * 109.46751 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00138 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99853 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00010 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00081 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47139 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47349 * 119.99780 * 17 15 13 20 20 H 1.48501 * 109.47454 * 240.00280 * 17 15 13 21 21 C 1.54511 * 110.51397 * 55.83319 * 5 4 2 22 22 C 1.54481 * 104.05890 * 118.64741 * 21 5 4 23 23 O 1.44425 * 104.80674 * 23.98079 * 22 21 5 24 24 C 1.44432 * 105.27295 * 319.48902 * 23 22 21 25 25 H 1.08996 * 109.47821 * 60.00011 * 1 2 3 26 26 H 1.09004 * 109.47151 * 299.99118 * 1 2 3 27 27 H 1.09009 * 109.46665 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47323 * 120.00110 * 2 1 3 29 29 H 1.08999 * 109.47122 * 174.02536 * 3 2 1 30 30 H 1.08996 * 109.47209 * 294.03215 * 3 2 1 31 31 H 1.09003 * 109.47010 * 54.03100 * 3 2 1 32 32 H 1.09000 * 109.47224 * 55.25262 * 6 5 4 33 33 H 1.08999 * 109.47071 * 175.24929 * 6 5 4 34 34 H 0.96996 * 120.00090 * 245.00281 * 10 7 6 35 35 H 1.08994 * 109.47101 * 285.00261 * 11 10 7 36 36 H 1.08999 * 109.46328 * 45.00094 * 11 10 7 37 37 H 1.08994 * 109.47372 * 300.00020 * 12 11 10 38 38 H 1.08997 * 109.47195 * 60.00141 * 12 11 10 39 39 H 0.97000 * 119.99704 * 179.97438 * 16 15 13 40 40 H 1.09000 * 110.50837 * 237.29054 * 21 5 4 41 41 H 1.09001 * 110.50939 * 0.02562 * 21 5 4 42 42 H 1.08999 * 110.37252 * 142.81229 * 22 21 5 43 43 H 1.09003 * 110.37188 * 265.03465 * 22 21 5 44 44 H 1.09002 * 110.36606 * 281.68185 * 24 23 22 45 45 H 1.08998 * 110.36828 * 159.34347 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 3.0597 -1.6046 -0.9111 6 6 4.3219 -0.8714 -0.4528 7 16 4.9352 0.1770 -1.8001 8 8 5.4275 -0.6207 -2.8681 9 8 4.0391 1.2530 -2.0422 10 7 6.2868 0.9028 -1.1767 11 6 7.4552 0.0933 -0.8217 12 6 8.6689 1.0053 -0.6324 13 6 9.8709 0.1726 -0.2679 14 1 9.7785 -0.8998 -0.1805 15 6 11.0889 0.7799 -0.0470 16 7 11.2019 2.0857 -0.1549 17 14 12.5787 -0.2522 0.4055 18 1 12.1902 -1.6844 0.4616 19 1 13.6385 -0.0672 -0.6181 20 1 13.0920 0.1743 1.7321 21 6 2.6211 -2.6410 0.1476 22 6 2.6979 -3.9928 -0.5962 23 8 3.6452 -3.7732 -1.6640 24 6 3.3497 -2.4528 -2.1692 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 0.5137 0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5138 0.8899 29 1 3.1246 1.4445 0.1070 30 1 1.7664 1.9246 -0.9385 31 1 1.5919 1.9863 0.8317 32 1 4.0879 -0.2512 0.4125 33 1 5.0868 -1.5992 -0.1818 34 1 6.3049 1.8638 -1.0464 35 1 7.2566 -0.4444 0.1053 36 1 7.6583 -0.6209 -1.6197 37 1 8.8675 1.5431 -1.5594 38 1 8.4658 1.7196 0.1655 39 1 12.0587 2.5129 0.0008 40 1 3.3049 -2.6327 0.9964 41 1 1.6006 -2.4434 0.4756 42 1 3.0558 -4.7747 0.0737 43 1 1.7217 -4.2590 -1.0014 44 1 2.4738 -2.4819 -2.8174 45 1 4.2083 -2.0517 -2.7077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595319488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:38 Heat of formation + Delta-G solvation = -167.216700 kcal Electronic energy + Delta-G solvation = -27033.776733 eV Core-core repulsion = 23178.760758 eV Total energy + Delta-G solvation = -3855.015975 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.60080 -37.97057 -36.91259 -35.79131 -35.43539 -33.61116 -32.77317 -31.73740 -30.32290 -29.17502 -27.60987 -26.79027 -24.51747 -23.45822 -21.93356 -21.19446 -20.32954 -19.21760 -17.91922 -17.61506 -16.52943 -16.40215 -16.21899 -15.67444 -15.65150 -15.41776 -14.84330 -14.69705 -14.53654 -14.10017 -13.87052 -13.60516 -13.37623 -13.14899 -12.82613 -12.66456 -12.54126 -12.40575 -12.14551 -11.97401 -11.84276 -11.76646 -11.49065 -11.39770 -11.30654 -11.15867 -11.07745 -10.83545 -10.64630 -10.60818 -10.48567 -10.01195 -9.94423 -9.61452 -9.28126 -8.93649 -8.43804 -6.10389 -4.14035 0.38638 2.93937 3.09510 3.26892 3.34937 3.38841 3.62268 3.78148 4.05342 4.13921 4.25224 4.39380 4.49449 4.67839 4.74438 4.77274 4.83538 4.95623 5.00876 5.21611 5.25884 5.26534 5.36500 5.41769 5.42366 5.51942 5.56727 5.63708 5.67032 5.69550 5.70872 5.93042 6.11466 6.25071 6.38827 6.42438 6.68179 6.90466 7.37171 7.52885 7.62239 7.88046 8.25283 8.92095 9.50890 11.01038 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.003476 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.907632 B = 8053.884436 C = 8756.468348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.072 3.928 3 C -0.169 4.169 4 O -0.358 6.358 5 C 0.101 3.899 6 C -0.662 4.662 7 S 2.612 3.388 8 O -0.952 6.952 9 O -0.948 6.948 10 N -1.114 6.114 11 C 0.114 3.886 12 C 0.018 3.982 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.284 1.284 21 C -0.175 4.175 22 C 0.043 3.957 23 O -0.355 6.355 24 C 0.017 3.983 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.138 0.862 33 H 0.148 0.852 34 H 0.416 0.584 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.025 -6.911 3.059 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.015 3.985 3 C -0.227 4.227 4 O -0.278 6.278 5 C 0.059 3.941 6 C -0.789 4.789 7 S 2.702 3.298 8 O -0.942 6.942 9 O -0.938 6.938 10 N -0.876 5.876 11 C -0.011 4.011 12 C -0.021 4.021 13 C -0.564 4.564 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.213 4.213 22 C -0.034 4.034 23 O -0.273 6.273 24 C -0.060 4.060 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.166 0.834 34 H 0.251 0.749 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.159 -6.970 1.933 23.309 hybrid contribution 0.939 -0.143 1.569 1.834 sum -21.220 -7.113 3.502 22.653 Atomic orbital electron populations 1.21990 0.93854 1.02430 1.02906 1.22279 0.94851 0.93433 0.87916 1.22328 1.01475 0.95428 1.03448 1.88068 1.51237 1.55617 1.32872 1.22473 0.85399 0.89370 0.96843 1.31330 1.08296 1.16991 1.22288 1.04898 0.73626 0.75182 0.76054 1.93519 1.78906 1.71813 1.49994 1.93591 1.64922 1.51148 1.84110 1.55592 1.29271 1.18814 1.83893 1.21696 0.85944 0.94790 0.98677 1.19282 0.90087 0.94715 0.98033 1.21130 0.93676 0.93771 1.47809 0.92160 1.25011 0.99056 0.94983 0.95272 1.69968 1.25160 1.08703 1.49257 0.86474 0.82621 0.80503 0.78044 1.19578 1.20889 1.20986 1.23630 1.03447 0.95192 0.99078 1.23418 0.93844 0.96815 0.89295 1.89244 1.55381 1.31868 1.50849 1.24217 1.05055 0.82781 0.93933 0.91396 0.91203 0.92291 0.91456 0.92531 0.90201 0.91808 0.84343 0.83390 0.74947 0.93120 0.91174 0.95489 0.95803 0.92854 0.89274 0.89030 0.88482 0.91726 0.89783 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.56 37.16 0.36 -0.83 16 2 C 0.07 0.70 2.01 -26.73 -0.05 0.64 16 3 C -0.17 -1.79 8.19 37.16 0.30 -1.49 16 4 O -0.36 -4.27 9.07 -35.44 -0.32 -4.59 16 5 C 0.10 1.16 0.70 -89.05 -0.06 1.10 16 6 C -0.66 -7.82 4.50 37.16 0.17 -7.66 16 7 S 2.61 40.35 4.87 -107.50 -0.52 39.83 16 8 O -0.95 -17.55 14.70 -57.54 -0.85 -18.40 16 9 O -0.95 -15.74 15.12 -59.29 -0.90 -16.63 16 10 N -1.11 -18.46 5.89 -10.61 -0.06 -18.53 16 11 C 0.11 2.21 6.07 -4.04 -0.02 2.18 16 12 C 0.02 0.43 5.11 -27.89 -0.14 0.29 16 13 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 17 Si 0.90 21.04 29.54 -169.99 -5.02 16.01 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.17 -1.53 5.43 -25.16 -0.14 -1.67 16 22 C 0.04 0.39 7.63 37.93 0.29 0.68 16 23 O -0.36 -4.60 11.65 -35.23 -0.41 -5.01 16 24 C 0.02 0.22 6.73 37.93 0.26 0.48 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 28 H 0.07 0.55 6.04 -51.93 -0.31 0.23 16 29 H 0.06 0.63 5.27 -51.93 -0.27 0.36 16 30 H 0.08 0.97 7.98 -51.93 -0.41 0.55 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.14 1.35 5.98 -51.92 -0.31 1.04 16 33 H 0.15 1.60 8.14 -51.92 -0.42 1.18 16 34 H 0.42 6.50 8.62 -34.47 -0.30 6.20 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.40 7.69 -51.93 -0.40 1.00 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.09 0.70 7.73 -51.93 -0.40 0.30 16 41 H 0.09 0.66 6.87 -51.93 -0.36 0.30 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 45 H 0.13 1.96 4.43 -51.93 -0.23 1.72 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -33.09 362.11 -8.53 -41.63 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.19 Total: 4.73 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 0.54 Total: -19.26 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.67 Total: -43.77 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -2.47 Total: -44.63 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 40.35 SS G_CDS: -0.52 Total: 39.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.09 -8.53 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595319488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.590 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds